mRNA_S-dermatodea_contig11897.1195.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11897.1195.1
Unique NamemRNA_S-dermatodea_contig11897.1195.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: D8LDT3_ECTSI (ATP-binding cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT3_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.480e-51
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    4 SMPGHHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
            SM GH CDIC+QRIK+ D KGWRCKLCDFDLCR CY KKDRR  EGALRGDKG+R+E++L TL YF+RAL LA PHW FF+VAF CLA+SNTA IALPNFQGGILDK
Sbjct:  351 SMAGHRCDICQQRIKSQDAKGWRCKLCDFDLCRSCYEKKDRRGAEGALRGDKGLRDEKNLSTLTYFKRALRLAGPHWPFFMVAFACLAISNTARIALPNFQGGILDK 457          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S1DV78_HEMAN (Hypothetical protein (Fragment) n=5 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DV78_HEMAN)

HSP 1 Score: 117 bits (292), Expect = 3.120e-28
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   16 HHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
            H CD C  RI     K +RCKLCDFDLC  C+ +KD R+ EG LRGDKG+R E+ L T+DYF+RALGLA+  W  F++A   L  +N   +  PN QG ILD
Sbjct:  219 HWCDKCSTRIDNG--KAYRCKLCDFDLCMRCFTRKDLRTSEGLLRGDKGVRREDPLTTMDYFKRALGLAKREWALFLLALLSLTSNNLLQLVSPNLQGSILD 318          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0U4T8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U4T8_HEMAN)

HSP 1 Score: 115 bits (289), Expect = 8.020e-28
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   16 HHCDICRQRIKTTDC-KGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
            H C  C  RI   DC K +RCKLCDFD+C  C+ +KD R+ EG LRGDKGIR E+ L T+DYFRRALGLAR  W  F++A   L+ ++   +  PN QG ILD
Sbjct:   88 HWCGKCFTRI---DCGKAYRCKLCDFDVCMRCFTRKDLRTSEGLLRGDKGIRREDPLSTIDYFRRALGLARGEWALFLLALVSLSCNSALQLVSPNLQGSILD 187          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0LVH6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LVH6_9CRYP)

HSP 1 Score: 113 bits (283), Expect = 2.810e-27
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   16 HHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
            H+CD+C  R+  +D + +RCKLCDFDLC  C+++KD+R+ EG LRGDKGI+   ++ TL YFRRA+ LAR  W  F ++   L L+N A +  PN QG ILD 
Sbjct:  266 HYCDVCGLRM--SDGRAYRCKLCDFDLCVRCFSRKDQRTAEGVLRGDKGIKLTSNVSTLSYFRRAVALARREWLLFFLSMTMLLLNNAAQLWAPNLQGRILDS 366          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0YQB2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YQB2_9CRYP)

HSP 1 Score: 112 bits (279), Expect = 1.840e-26
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   16 HHCDICRQRIKTTDC-KGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
            H C  C  RI   DC K +RCKLCDFD+C  C+ +KD R+ EG LRGDKGIR E+ L T+DYF+RALGLAR  W   ++A   L+ ++   +  PN QG ILD
Sbjct:  290 HWCGKCFTRI---DCGKAYRCKLCDFDVCMRCFTRKDLRTSEGLLRGDKGIRREDPLSTIDYFKRALGLARGEWALLLLALASLSCNSALQLVSPNLQGSILD 389          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0L240_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L240_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 4.830e-22
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    7 MPGHHCDICRQRIKTTDCK--GWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
            +PGH C++CR      D K   +RC +CDFD C +C+ KKD  + EG +RGDKG+R++ +L    Y RRA+ L RPH  +F  A   L  ++   I +PN QGGI+D+
Sbjct:   30 LPGHKCNLCRNDKPERDGKMPRYRCNVCDFDACPLCFNKKDTHAGEGFMRGDKGVRKDIELSRGQYARRAVLLMRPHALYFAAALTALVGNSVLQIFVPNLQGGIIDR 137          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S4FYJ7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FYJ7_9EUGL)

HSP 1 Score: 88.6 bits (218), Expect = 1.100e-20
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    4 SMPGHHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAF 255
            S+  H CD+C QRI   D + +RCKLCDFD+C +C+ K ++++ EG LRGDKG+ EE+ + T  YF RAL L +  +H  IVAF
Sbjct:   22 SVACHWCDLCAQRI---DKQAYRCKLCDFDVCVICFRKGNKKTSEGLLRGDKGVVEEQQVSTTGYFWRALLLTKRFFHVVIVAF 102          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A8J2S7K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7K0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.310e-16
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   16 HHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSM-EGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
            H CD+C   I+      WRCKLCDFDLC  C ++ D  ++ E  LRGD+G R E ++ +  Y RRA+ LA        VA   LA ++   +ALP +QG I+D+
Sbjct:  253 HWCDLCGTPIRRGG--AWRCKLCDFDLCVPCASRTDAATVGEHVLRGDRGARRETNVSSSSYLRRAISLAAGQKGLLFVALALLACNSALALALPKYQGRIVDR 354          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A0N1IM85_LEPSE (ABC transporter n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1IM85_LEPSE)

HSP 1 Score: 77.8 bits (190), Expect = 1.900e-14
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   22 CDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGAL-RGDKGIREE-EDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
            CD+C QRI     +G  C  CDFD C  CY  K   S E  L RGD+G+  E + L    Y  R+LG   P W    V+  CL ++    +ALP++QG +LD 
Sbjct:  237 CDVCNQRIIK---EGMECASCDFDCCLSCYRHKAMLSAENDLTRGDRGVASEVQQLSPFVYILRSLGFLIPFWRVVAVSIGCLIVNQLIRVALPHYQGKVLDS 336          
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A2K1K6B8_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K6B8_PHYPA)

HSP 1 Score: 65.5 bits (158), Expect = 3.990e-10
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  136 EGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
            EGALRGDKG + E D+    Y  RA+ LAR   +    AFFCL LS+ +++ LP++QG ILD
Sbjct:  276 EGALRGDKGAKNETDVDQNSYLMRAIQLARGEAYLLACAFFCLGLSSASSLILPSYQGRILD 337          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LDT3_ECTSI1.480e-5177.57ATP-binding cassette transporter, subfamily B, mem... [more]
A0A7S1DV78_HEMAN3.120e-2852.94Hypothetical protein (Fragment) n=5 Tax=Hemiselmis... [more]
A0A7S0U4T8_HEMAN8.020e-2854.37Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0LVH6_9CRYP2.810e-2750.49Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0YQB2_9CRYP1.840e-2652.43Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0L240_9EUKA4.830e-2243.52Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4FYJ7_9EUGL1.100e-2050.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J2S7K0_9STRA1.310e-1641.35Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0N1IM85_LEPSE1.900e-1439.81ABC transporter n=1 Tax=Leptomonas seymouri TaxID=... [more]
A0A2K1K6B8_PHYPA3.990e-1050.00Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11897contigS-dermatodea_contig11897:430..1592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.6e-44
Seed eggNOG ortholog2880.D8LDT3
KEGG koko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionATP-binding cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type
Ec32 orthologEc-08_003250.1
Exons2
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.4987953-CDS-S-dermatodea_contig11897:429..6361622924222.4987953-CDS-S-dermatodea_contig11897:429..636Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11897 430..636 -
1694079104.138519-CDS-S-dermatodea_contig11897:429..6361694079104.138519-CDS-S-dermatodea_contig11897:429..636Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11897 430..636 -
1622924222.5110056-CDS-S-dermatodea_contig11897:1472..15921622924222.5110056-CDS-S-dermatodea_contig11897:1472..1592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11897 1473..1592 -
1694079105.0014315-CDS-S-dermatodea_contig11897:1472..15921694079105.0014315-CDS-S-dermatodea_contig11897:1472..1592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11897 1473..1592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11897.1195.1prot_S-dermatodea_contig11897.1195.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11897 430..1592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11897.1195.1

>prot_S-dermatodea_contig11897.1195.1 ID=prot_S-dermatodea_contig11897.1195.1|Name=mRNA_S-dermatodea_contig11897.1195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MSMPGHHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALR
GDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPN
FQGGILDK*
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mRNA from alignment at S-dermatodea_contig11897:430..1592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11897.1195.1 ID=mRNA_S-dermatodea_contig11897.1195.1|Name=mRNA_S-dermatodea_contig11897.1195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1163bp|location=Sequence derived from alignment at S-dermatodea_contig11897:430..1592- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTATGCCTGGGCATCATTGCGACATCTGCCGGCAGAGGATTAAAAC GACGGACTGCAAGGGGTGGAGGTGCAAGCTTTGCGACTTCGACCTGTGCC GGGTCTGCTACGCCAAGAAGGTACGTTGGCGCCGGCGCTAAATAGGAGAC CAATAAAACTGCTTGCCTGCAGTTTAAGCTTGATATACTGCAATGGTTGC GACGGGCGTTCACTCGATGAAATGTGGGGGGGGAAACAAGTTGCGTTTTT TTGTTGTTGCGGCCGTGGTCCCTCGGCGGGTCGGCTCTGAGCGACACAAA AAAATCCGCGCTGTTGGTGTGGCGGCGTCCACGGAAAACGTGACACGCAG ACCGAGGGCACCTCGTCTTCGCTCCTTTTTTTCCATTCTTTATTGGTTCC TCTCTTGGTGAGTACATGCATCGGAAAACATTTACGTTCGTGATTTTTTT CCCTGGGACTACTGTACGATAGTAGAACATGAAGACGCAGAGCCGAGACC ACAAGCGCAATGGTGTGTGTGTTTACCGACCCCGGGCGAATGAAACGAAA GAGAGATCCCCTAGGAGGATACCCGGGTGCCACTCGCTGGCGCGGCAATG ATCGTCGCTTCCTGCAAGGTTTGGGCTCGGATCGAGCACGGACCGGTTTA ATCTGGTGGTGTGGATCCTGTTCTCGTCTTGAAGAAGAGCAGCTAGATAT GATAGAGGGACGTGGGCGACTCGATTGAGGCGCGAAAAGCACGTAGTTCA TCAACAACCCGGCATGAAAAATAATTTCTGGCTGGGCCTGTCGTCGGGAC GAAAACCCCTTGTCGTGGAGGAGCTGAGTTTTGTTTGCAGCGGGGCCGGG CAAAAGAAAGCATTTTAGAATCTCGTTTAGTGCAAACTGTCCGTACTGCT GAGGAGCCAAACATTCGCTTACGGAAAGCCCCGCTGTGTCCCGCCGCCCG CCGCAGGACCGGCGTAGCATGGAAGGCGCTCTGAGGGGAGACAAAGGGAT ACGCGAAGAAGAAGACTTGCAGACGCTTGACTACTTCCGCCGAGCGCTGG GCCTGGCCAGGCCCCACTGGCACTTTTTTATCGTCGCCTTTTTCTGCCTC GCGCTGTCCAACACGGCTAACATCGCTCTGCCGAACTTCCAAGGCGGAAT ATTGGATAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11897:430..1592-

>mRNA_S-dermatodea_contig11897.1195.1 ID=mRNA_S-dermatodea_contig11897.1195.1|Name=mRNA_S-dermatodea_contig11897.1195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig11897:430..1592- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTATGCCTGGGCATCATTGCGACATCTGCCGGCAGAGGATTAAAAC
GACGGACTGCAAGGGGTGGAGGTGCAAGCTTTGCGACTTCGACCTGTGCC
GGGTCTGCTACGCCAAGAAGATGTCTATGCCTGGGCATCATTGCGACATC
TGCCGGCAGAGGATTAAAACGACGGACTGCAAGGGGTGGAGGTGCAAGCT
TTGCGACTTCGACCTGTGCCGGGTCTGCTACGCCAAGAAGGACCGGCGTA
GCATGGAAGGCGCTCTGAGGGGAGACAAAGGGATACGCGAAGAAGAAGAC
TTGCAGACGCTTGACTACTTCCGCCGAGCGCTGGGCCTGGCCAGGCCCCA
CTGGCACTTTTTTATCGTCGCCTTTTTCTGCCTCGCGCTGTCCAACACGG
CTAACATCGCTCTGCCGAACTTCCAAGGCGGAATATTGGATAAGTGAGAC
CGGCGTAGCATGGAAGGCGCTCTGAGGGGAGACAAAGGGATACGCGAAGA
AGAAGACTTGCAGACGCTTGACTACTTCCGCCGAGCGCTGGGCCTGGCCA
GGCCCCACTGGCACTTTTTTATCGTCGCCTTTTTCTGCCTCGCGCTGTCC
AACACGGCTAACATCGCTCTGCCGAACTTCCAAGGCGGAATATTGGATAA
GTGA
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