mRNA_S-dermatodea_contig11897.1195.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: D8LDT3_ECTSI (ATP-binding cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT3_ECTSI) HSP 1 Score: 183 bits (465), Expect = 1.480e-51 Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 1
Query: 4 SMPGHHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
SM GH CDIC+QRIK+ D KGWRCKLCDFDLCR CY KKDRR EGALRGDKG+R+E++L TL YF+RAL LA PHW FF+VAF CLA+SNTA IALPNFQGGILDK
Sbjct: 351 SMAGHRCDICQQRIKSQDAKGWRCKLCDFDLCRSCYEKKDRRGAEGALRGDKGLRDEKNLSTLTYFKRALRLAGPHWPFFMVAFACLAISNTARIALPNFQGGILDK 457
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S1DV78_HEMAN (Hypothetical protein (Fragment) n=5 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DV78_HEMAN) HSP 1 Score: 117 bits (292), Expect = 3.120e-28 Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 1
Query: 16 HHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
H CD C RI K +RCKLCDFDLC C+ +KD R+ EG LRGDKG+R E+ L T+DYF+RALGLA+ W F++A L +N + PN QG ILD
Sbjct: 219 HWCDKCSTRIDNG--KAYRCKLCDFDLCMRCFTRKDLRTSEGLLRGDKGVRREDPLTTMDYFKRALGLAKREWALFLLALLSLTSNNLLQLVSPNLQGSILD 318
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0U4T8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U4T8_HEMAN) HSP 1 Score: 115 bits (289), Expect = 8.020e-28 Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 1
Query: 16 HHCDICRQRIKTTDC-KGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
H C C RI DC K +RCKLCDFD+C C+ +KD R+ EG LRGDKGIR E+ L T+DYFRRALGLAR W F++A L+ ++ + PN QG ILD
Sbjct: 88 HWCGKCFTRI---DCGKAYRCKLCDFDVCMRCFTRKDLRTSEGLLRGDKGIRREDPLSTIDYFRRALGLARGEWALFLLALVSLSCNSALQLVSPNLQGSILD 187
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0LVH6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LVH6_9CRYP) HSP 1 Score: 113 bits (283), Expect = 2.810e-27 Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 16 HHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
H+CD+C R+ +D + +RCKLCDFDLC C+++KD+R+ EG LRGDKGI+ ++ TL YFRRA+ LAR W F ++ L L+N A + PN QG ILD
Sbjct: 266 HYCDVCGLRM--SDGRAYRCKLCDFDLCVRCFSRKDQRTAEGVLRGDKGIKLTSNVSTLSYFRRAVALARREWLLFFLSMTMLLLNNAAQLWAPNLQGRILDS 366
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0YQB2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YQB2_9CRYP) HSP 1 Score: 112 bits (279), Expect = 1.840e-26 Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 16 HHCDICRQRIKTTDC-KGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
H C C RI DC K +RCKLCDFD+C C+ +KD R+ EG LRGDKGIR E+ L T+DYF+RALGLAR W ++A L+ ++ + PN QG ILD
Sbjct: 290 HWCGKCFTRI---DCGKAYRCKLCDFDVCMRCFTRKDLRTSEGLLRGDKGIRREDPLSTIDYFKRALGLARGEWALLLLALASLSCNSALQLVSPNLQGSILD 389
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S0L240_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L240_9EUKA) HSP 1 Score: 99.4 bits (246), Expect = 4.830e-22 Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 7 MPGHHCDICRQRIKTTDCK--GWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
+PGH C++CR D K +RC +CDFD C +C+ KKD + EG +RGDKG+R++ +L Y RRA+ L RPH +F A L ++ I +PN QGGI+D+
Sbjct: 30 LPGHKCNLCRNDKPERDGKMPRYRCNVCDFDACPLCFNKKDTHAGEGFMRGDKGVRKDIELSRGQYARRAVLLMRPHALYFAAALTALVGNSVLQIFVPNLQGGIIDR 137
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A7S4FYJ7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FYJ7_9EUGL) HSP 1 Score: 88.6 bits (218), Expect = 1.100e-20 Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 4 SMPGHHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAF 255
S+ H CD+C QRI D + +RCKLCDFD+C +C+ K ++++ EG LRGDKG+ EE+ + T YF RAL L + +H IVAF
Sbjct: 22 SVACHWCDLCAQRI---DKQAYRCKLCDFDVCVICFRKGNKKTSEGLLRGDKGVVEEQQVSTTGYFWRALLLTKRFFHVVIVAF 102
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A8J2S7K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7K0_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.310e-16 Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 16 HHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSM-EGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
H CD+C I+ WRCKLCDFDLC C ++ D ++ E LRGD+G R E ++ + Y RRA+ LA VA LA ++ +ALP +QG I+D+
Sbjct: 253 HWCDLCGTPIRRGG--AWRCKLCDFDLCVPCASRTDAATVGEHVLRGDRGARRETNVSSSSYLRRAISLAAGQKGLLFVALALLACNSALALALPKYQGRIVDR 354
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A0N1IM85_LEPSE (ABC transporter n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1IM85_LEPSE) HSP 1 Score: 77.8 bits (190), Expect = 1.900e-14 Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 22 CDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGAL-RGDKGIREE-EDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILDK 324
CD+C QRI +G C CDFD C CY K S E L RGD+G+ E + L Y R+LG P W V+ CL ++ +ALP++QG +LD
Sbjct: 237 CDVCNQRIIK---EGMECASCDFDCCLSCYRHKAMLSAENDLTRGDRGVASEVQQLSPFVYILRSLGFLIPFWRVVAVSIGCLIVNQLIRVALPHYQGKVLDS 336
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Match: A0A2K1K6B8_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K6B8_PHYPA) HSP 1 Score: 65.5 bits (158), Expect = 3.990e-10 Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 136 EGALRGDKGIREEEDLQTLDYFRRALGLARPHWHFFIVAFFCLALSNTANIALPNFQGGILD 321
EGALRGDKG + E D+ Y RA+ LAR + AFFCL LS+ +++ LP++QG ILD
Sbjct: 276 EGALRGDKGAKNETDVDQNSYLMRAIQLARGEAYLLACAFFCLGLSSASSLILPSYQGRILD 337 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11897.1195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11897.1195.1 >prot_S-dermatodea_contig11897.1195.1 ID=prot_S-dermatodea_contig11897.1195.1|Name=mRNA_S-dermatodea_contig11897.1195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp MSMPGHHCDICRQRIKTTDCKGWRCKLCDFDLCRVCYAKKDRRSMEGALRback to top mRNA from alignment at S-dermatodea_contig11897:430..1592- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11897.1195.1 ID=mRNA_S-dermatodea_contig11897.1195.1|Name=mRNA_S-dermatodea_contig11897.1195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1163bp|location=Sequence derived from alignment at S-dermatodea_contig11897:430..1592- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11897:430..1592- >mRNA_S-dermatodea_contig11897.1195.1 ID=mRNA_S-dermatodea_contig11897.1195.1|Name=mRNA_S-dermatodea_contig11897.1195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig11897:430..1592- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |