mRNA_S-dermatodea_contig11890.1190.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11890.1190.1
Unique NamemRNA_S-dermatodea_contig11890.1190.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.630e-11
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:   70 TGLALLEVGTTTGNQQVLVIDYFFAEAVSGLVMLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVCYIVAGGPLWLFFY-SWIGRYVHIALDTFVLYGALSIPS 423
            TG A+      +G+   L +  FF E + G+ M VI+  LL+FR  E++E   VH RIR +F LT I   VN+ +   G  Y+V G    L    +W  R++HIALDTFVLYG L +P+
Sbjct:   88 TGFAVRNEDQRSGDW--LAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVLGVPA 204
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BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-10
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   91 VGTTTGNQQVLVIDYFFAEAVSGLVMLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVCYIVAG-GPLWLFFYSWIGRYVHIALDTFVLYGAL 411
            V +  G+   +V+  FF E + G+ M VIL  LL+FR  E++E   +  RIR +F LT +  AVNI I      +++       L  +SW+ RY+H+ALDTFVLYG L
Sbjct:  165 VNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVL 272
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BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.830e-10
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:   64 LVTGLALLEVGTTTGNQQVLVIDYFFAEAVSGLVMLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVC--YIVAGG--PLWLFFYSWIGRYVHIALDTFVLYGAL 411
            +V G +   V +  G    +V+  FF E + GL M VI+  LL+FR  E++E   +H RIR +  LT +   +++ I   G+C    V GG     L  ++W+ RY+HIALDTFVLYG L
Sbjct:  107 IVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSI---GICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVL 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNN1_ECTSI5.630e-1141.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTK5_ECTSI1.380e-1040.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK4_ECTSI2.830e-1039.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11890contigS-dermatodea_contig11890:3217..5461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size1345
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11890.1190.1prot_S-dermatodea_contig11890.1190.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11890 3859..4788 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.1267042-UTR-S-dermatodea_contig11890:3216..33211622924222.1267042-UTR-S-dermatodea_contig11890:3216..3321Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11890 3217..3321 +
1694079103.8522737-UTR-S-dermatodea_contig11890:3216..33211694079103.8522737-UTR-S-dermatodea_contig11890:3216..3321Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11890 3217..3321 +
1622924222.1420128-UTR-S-dermatodea_contig11890:3798..38581622924222.1420128-UTR-S-dermatodea_contig11890:3798..3858Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11890 3799..3858 +
1694079103.8611033-UTR-S-dermatodea_contig11890:3798..38581694079103.8611033-UTR-S-dermatodea_contig11890:3798..3858Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11890 3799..3858 +
1622924222.1708975-UTR-S-dermatodea_contig11890:4788..54611622924222.1708975-UTR-S-dermatodea_contig11890:4788..5461Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11890 4789..5461 +
1694079103.8913398-UTR-S-dermatodea_contig11890:4788..54611694079103.8913398-UTR-S-dermatodea_contig11890:4788..5461Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11890 4789..5461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.1506088-CDS-S-dermatodea_contig11890:3858..39121622924222.1506088-CDS-S-dermatodea_contig11890:3858..3912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11890 3859..3912 +
1694079103.8709855-CDS-S-dermatodea_contig11890:3858..39121694079103.8709855-CDS-S-dermatodea_contig11890:3858..3912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11890 3859..3912 +
1622924222.1589708-CDS-S-dermatodea_contig11890:4335..47881622924222.1589708-CDS-S-dermatodea_contig11890:4335..4788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11890 4336..4788 +
1694079103.881042-CDS-S-dermatodea_contig11890:4335..47881694079103.881042-CDS-S-dermatodea_contig11890:4335..4788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11890 4336..4788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11890.1190.1

>prot_S-dermatodea_contig11890.1190.1 ID=prot_S-dermatodea_contig11890.1190.1|Name=mRNA_S-dermatodea_contig11890.1190.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=169bp
MLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVCY
IVAGGPLWLFFYSWIGRYVHIALDTFVLYGALSIPSFNLEFEESEEATGS
TLFCEETDSAAPGKCSSVMCVSGNRSWCFPPSLASFQPWRQAPFCNETRV
SSQVHSRPNSSSSPGADP*
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mRNA from alignment at S-dermatodea_contig11890:3217..5461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11890.1190.1 ID=mRNA_S-dermatodea_contig11890.1190.1|Name=mRNA_S-dermatodea_contig11890.1190.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2245bp|location=Sequence derived from alignment at S-dermatodea_contig11890:3217..5461+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCTATTCGTGCTTGCCGCTGCGGCCATCGCGGCAGTGGTCCTTGCGGT
CGACGGCATTTGGCTGGTCACCGGCCTTGCCCTTCTTGAGGTTGGCACAA
CAACGGTAAGCCTCTTGGGTTCTTTTCAGGGGGTTCGGGAGTGGGGGTTT
TGTAGAGTCAGCGAAATGAAGTGCCCTGCTTGTGGGCCTGCTACATGCTA
GTTTCTGCCGCCCATATACAGCAGCAGCACTAGGGTTTATCTTCACCTCC
TCCTCCGTTTTCTTCGTCTTCTAACTTTCAGCTGTTAGCCGTATATATGC
CCAAGTTGTTGTATAGATATACAGGCAGGATGCATGTTTTTTCCGACGCG
AGCTCGATTCGTTTTTGTCGAGTGAGCGGACGTAACTGCCCCAAGGGTCA
CACATCGCATACACGCCTGGCTCGAGTGGTACGATACAGCGGCTTGAAGC
TGACAGCGAACGGGATAATGCATACCTCGTACAATGCTACTCGTTCAAAT
TTGTTTTTGACGTCAATTCTCTTCCTCATTTTCCAGCCCGTTCTTCGCGA
TCGACCCGCAACGTGTTCTCGTGACACGCCAGGGAAACCAGCAAGTGCTC
GTGATCGACTACTTCTTCGCTGAGGCAGTTTCCGGCCTAGTCATGCTGGT
AATTCTGGGCCTGCTCTTAATCTTTCGACGGCCGGAGCTGCGGGAGGTGA
TGACTCGGCATGGTAGCCGAGGCCCCGGGGTTTGGCTTCGCGGTTTGGCC
GGTAGTCTCGAGGTGGCGGGCGGATGACGCCGTTCGGTTCTGTTTCTCCA
CACGGAGGAAAAGCGGAAGCTTGGCTTGTTTGGAGTCATCAGCACGAACG
GACGCATCGTGTAATTAGGACTGACTATCATGATGTAAAATCTTCCCGGC
CGCACAAGAAGGCTAAGCAATCGAGGTGGAATTATAATTTAGTCGAAGAA
TGCTAAAAAAGACACGAAAAAAACCGAACGGCTCGCAAAAACCGAGGAAC
CTCTAAATGGTAAGAAAAAACGTCAAACTGTGAACACTTGTAAACTGTTT
TTTTCATCATCATACGCCCCGCCCCCCCCCCCCCCCCTCCTACCCCGCGC
GCGTTTCCCTGCCGTCCAGGTGTTGATGGTTCACCCTCGCATCAGATTAC
ACTTCTTCCTCACCACGATCGCCCTTGCAGTGAACATCTTTATCACGGCC
GGGGGCGTATGTTACATCGTCGCGGGTGGTCCGCTGTGGCTCTTTTTCTA
TTCCTGGATTGGACGCTACGTGCACATCGCGCTCGACACTTTCGTGCTCT
ACGGCGCCCTAAGCATCCCTTCTTTCAACCTAGAATTTGAAGAAAGCGAA
GAAGCCACCGGAAGCACGCTCTTCTGCGAAGAGACCGATTCTGCCGCCCC
CGGGAAGTGCTCAAGTGTTATGTGCGTCTCCGGAAACCGGAGTTGGTGCT
TCCCGCCATCTCTCGCGTCCTTTCAGCCATGGAGACAAGCGCCATTCTGC
AACGAGACAAGGGTATCGTCACAAGTACACTCGCGGCCGAACAGTTCGTC
TTCACCGGGTGCCGACCCATGAGCTAGCTGCGTCTGATTCCCGGCGCAAT
GAAAATCCTTGAGAAGACGTGCTTGCATCAACGTCCAATGATTCTCAACG
GGCTGGTTGCACGTAGGGCGAGAGCTCTCAGAGGAGAAGTCTTAATAGTG
GAACAGAGAGAGAGCCAGCAAGGAAAGTTCAGTGGCTGCGACAGAGAGGG
CGAGATTAACGATGGCGATTGAACGCTGGGATGCGTCATCGTATCGTGTG
TCTGGTGGAGATTTTAGGGTGCGTAGGCTTACTTGTGAAAAGCACGTAAT
ATTATCGAGAGGGCGGAAGAGGGAGCGGGGGGGGATGGGGTCCGAACGCT
TGCTCTATGTTTTCGAAGTCATTGCGTTTTGTGGGGGTGGGGATTGTTCT
CCTCTAGCGTTGCATGATCAAGATGCCTGGCATTCTGCAAGATGTATCAT
AGTGTTATACGTACCCTCCACATGTTGTAGTCAAGGAGAAAATATGACGA
ATCCACGCCTTGCTTGTGCTATTAATATGAAAATATTGTATATATATACG
CTTGTATCATCGAGGGACTGTCCCGCACAAACAACTTGTAGATGTAATTA
CACGAGCCCCACTACTATTGATACTACACTAGTGGGTACCCATGGCTACG
CCGGGCCCCGTGTGAGGGGTGCGTTGGCAGGACGATATGCCGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11890:3217..5461+

>mRNA_S-dermatodea_contig11890.1190.1 ID=mRNA_S-dermatodea_contig11890.1190.1|Name=mRNA_S-dermatodea_contig11890.1190.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at S-dermatodea_contig11890:3217..5461+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGTAATTCTGGGCCTGCTCTTAATCTTTCGACGGCCGGAGCTGCG
GGAGATGCTGGTAATTCTGGGCCTGCTCTTAATCTTTCGACGGCCGGAGC
TGCGGGAGGTGTTGATGGTTCACCCTCGCATCAGATTACACTTCTTCCTC
ACCACGATCGCCCTTGCAGTGAACATCTTTATCACGGCCGGGGGCGTATG
TTACATCGTCGCGGGTGGTCCGCTGTGGCTCTTTTTCTATTCCTGGATTG
GACGCTACGTGCACATCGCGCTCGACACTTTCGTGCTCTACGGCGCCCTA
AGCATCCCTTCTTTCAACCTAGAATTTGAAGAAAGCGAAGAAGCCACCGG
AAGCACGCTCTTCTGCGAAGAGACCGATTCTGCCGCCCCCGGGAAGTGCT
CAAGTGTTATGTGCGTCTCCGGAAACCGGAGTTGGTGCTTCCCGCCATCT
CTCGCGTCCTTTCAGCCATGGAGACAAGCGCCATTCTGCAACGAGACAAG
GGTATCGTCACAAGTACACTCGCGGCCGAACAGTTCGTCTTCACCGGGTG
CCGACCCATGAGTGTTGATGGTTCACCCTCGCATCAGATTACACTTCTTC
CTCACCACGATCGCCCTTGCAGTGAACATCTTTATCACGGCCGGGGGCGT
ATGTTACATCGTCGCGGGTGGTCCGCTGTGGCTCTTTTTCTATTCCTGGA
TTGGACGCTACGTGCACATCGCGCTCGACACTTTCGTGCTCTACGGCGCC
CTAAGCATCCCTTCTTTCAACCTAGAATTTGAAGAAAGCGAAGAAGCCAC
CGGAAGCACGCTCTTCTGCGAAGAGACCGATTCTGCCGCCCCCGGGAAGT
GCTCAAGTGTTATGTGCGTCTCCGGAAACCGGAGTTGGTGCTTCCCGCCA
TCTCTCGCGTCCTTTCAGCCATGGAGACAAGCGCCATTCTGCAACGAGAC
AAGGGTATCGTCACAAGTACACTCGCGGCCGAACAGTTCGTCTTCACCGG
GTGCCGACCCATGA
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