prot_S-dermatodea_contig11890.1190.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11890.1190.1
Unique Nameprot_S-dermatodea_contig11890.1190.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length169
Homology
BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-9
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 0
Query:    1 MLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVCYIVAGGPLWLFFY-SWIGRYVHIALDTFVLYGALSIPS 86
            M VI+  LL+FR  E++E   VH RIR +F LT I   VN+ +   G  Y+V G    L    +W  R++HIALDTFVLYG L +P+
Sbjct:  118 MFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVLGVPA 204          
BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0
Query:    1 MLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVCYIVAG-GPLWLFFYSWIGRYVHIALDTFVLYGAL 82
            M VIL  LL+FR  E++E   +  RIR +F LT +  AVNI I      +++       L  +SW+ RY+H+ALDTFVLYG L
Sbjct:  190 MFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVL 272          
BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-6
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0
Query:    1 MLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVC--YIVAGG--PLWLFFYSWIGRYVHIALDTFVLYGAL 82
            M VI+  LL+FR  E++E   +H RIR +  LT +   +++ I   G+C    V GG     L  ++W+ RY+HIALDTFVLYG L
Sbjct:  141 MFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSI---GICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVL 223          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11890.1190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNN1_ECTSI1.500e-945.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTK5_ECTSI1.030e-744.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK4_ECTSI1.940e-643.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 83..168
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 54..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..82
NoneNo IPR availableTMHMMTMhelixcoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 30..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11890contigS-dermatodea_contig11890:3859..4788 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11890.1190.1mRNA_S-dermatodea_contig11890.1190.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11890 3217..5461 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11890.1190.1 ID=prot_S-dermatodea_contig11890.1190.1|Name=mRNA_S-dermatodea_contig11890.1190.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=169bp
MLVILGLLLIFRRPELREVLMVHPRIRLHFFLTTIALAVNIFITAGGVCY
IVAGGPLWLFFYSWIGRYVHIALDTFVLYGALSIPSFNLEFEESEEATGS
TLFCEETDSAAPGKCSSVMCVSGNRSWCFPPSLASFQPWRQAPFCNETRV
SSQVHSRPNSSSSPGADP*
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