mRNA_S-dermatodea_contig11861.1165.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11861.1165.1
Unique NamemRNA_S-dermatodea_contig11861.1165.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11861.1165.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.830e-16
Identity = 75/193 (38.86%), Postives = 96/193 (49.74%), Query Frame = 1 
Query:    1 RHVSYRFPGVELEAAAALFSILQSESSRGSAKXXXXXXXXXXXXXG--------YGAAAPPVFAHEPMPMSALVAATKSLRKLASNVIVFESSRPLMR---------WARGGAGGG-GFGAPSMVRLVRYLSRQCDRFRGKTTHSIVERNLDALMSTLRNCPGGMSTVTAAAAAFQSLRAVSGKSIEEDRFVR 525
            RH+  RF G ELEAAAAL SIL +ESS   AK             G                     +P+S LVAA +SLR L+++ +  E S  +             RG      G G PS  RLVRYL+R+CD+ RG T+H +VERNLDALMS LR+   G+ +  AAA    S  AVS   + + + VR
Sbjct:  101 RHL-VRFVGAELEAAAALLSILATESSARCAKAMAAKVAYEMAQAGGXXXXXXXXXXXXXXXXXXXXLPLSVLVAAVRSLRTLSASAVAIEKSVRISSACPTXXXXXXXRGPVSVRLGPGGPSASRLVRYLTRECDKVRGITSHPVVERNLDALMSELRSWSAGLGS--AAAGGRFSAPAVSTGEVFQSKGVR 290
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11861.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1S2_9PHAE2.830e-1638.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11861contigS-dermatodea_contig11861:4443..6754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002980.1
Exons2
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.9711523-CDS-S-dermatodea_contig11861:4442..46111622924219.9711523-CDS-S-dermatodea_contig11861:4442..4611Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11861 4443..4611 -
1694079102.2137952-CDS-S-dermatodea_contig11861:4442..46111694079102.2137952-CDS-S-dermatodea_contig11861:4442..4611Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11861 4443..4611 -
1622924219.9821377-CDS-S-dermatodea_contig11861:6398..67541622924219.9821377-CDS-S-dermatodea_contig11861:6398..6754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11861 6399..6754 -
1694079102.2294676-CDS-S-dermatodea_contig11861:6398..67541694079102.2294676-CDS-S-dermatodea_contig11861:6398..6754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11861 6399..6754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11861.1165.1prot_S-dermatodea_contig11861.1165.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11861 4443..6754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11861.1165.1

>prot_S-dermatodea_contig11861.1165.1 ID=prot_S-dermatodea_contig11861.1165.1|Name=mRNA_S-dermatodea_contig11861.1165.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=175bp
RHVSYRFPGVELEAAAALFSILQSESSRGSAKAAAAAAAAGATAGGYGAA
APPVFAHEPMPMSALVAATKSLRKLASNVIVFESSRPLMRWARGGAGGGG
FGAPSMVRLVRYLSRQCDRFRGKTTHSIVERNLDALMSTLRNCPGGMSTV
TAAAAAFQSLRAVSGKSIEEDRFVR
back to top

mRNA from alignment at S-dermatodea_contig11861:4443..6754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11861.1165.1 ID=mRNA_S-dermatodea_contig11861.1165.1|Name=mRNA_S-dermatodea_contig11861.1165.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2312bp|location=Sequence derived from alignment at S-dermatodea_contig11861:4443..6754- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCATGTTTCGTACAGGTTTCCCGGCGTGGAACTAGAAGCAGCGGCGGC
ATTGTTCTCGATCCTGCAATCCGAATCGTCCAGGGGTTCCGCGAAGGCGG
CGGCAGCAGCGGCCGCGGCGGGGGCGACGGCAGGGGGATACGGGGCTGCA
GCCCCCCCGGTGTTTGCCCACGAGCCCATGCCGATGTCGGCCCTCGTGGC
GGCGACGAAGTCCTTGAGGAAGCTGGCCAGCAACGTGATCGTGTTCGAGA
GCTCGAGGCCCCTGATGAGATGGGCGAGGGGGGGGGCGGGGGGAGGGGGG
TTTGGAGCGCCCTCGATGGTTCGGCTGGTGCGGTACTTGTCCAGGCAGTG
CGATCGGTGAGAGAGGTGGAGAGAGAAGAGACACATGCAGTATATTTGTA
TTATGATAGGACTCACAGCATCATATACATGTAGGCTTCCAGTAGGTGAA
CAATGCTGAAAATGGCGGTACGATGGTATTATCACAGCACCCCATAGTAA
TCGCACGCCCCGTGGTCAAACTGGTGACCAACAGCCTACTGTAGTAAGCG
GAGGACCGGGGTTCGAATCCCGGCAGAGTCGATATTTATTTGTTATCTCT
ACGTACCTCCGCCGCGGAAAGCTTTCGCGAGAGCGTGAGTAAGCAAAATC
CGATAAATCGGCGAGTTGCGGGACTGCCGGACCCAATGCAATCGCGATAA
AAAGCAAAGGTAAGAACCGGGGATAAGAGAGATGGGATGATCCCTTGTGA
CCACAGATAGACCTCGGAAAAGAAAGTCTGTCATATGTGTGCAAAAAAAA
ACAAAAAATCGAAATGTATAACGTACGTTTCCACTGAGTTAAGTTAGATT
GGGCCGTCTTTTTCCTCTACCAAAAATATTGGTGGGGCCCCAATGCTAGT
TCTGTGTTCATAAATATTTATTATACTGTCTTCAGAGAAGAGAGACCTGT
ACCATAACCACAACCATATCTACTGTATTCTTTATTTACTATTAACTAAT
AGCGCTTTGGCCTTTTTTCGTTGCGATTTTAGAGTCACCATACCAGTACT
GTTTCCTACACGTTTTGCGTAACACACGCGATGGCGATTTTCAAGAGGGC
TACAATTGATTGGTGCCAAAACAACTCGATTTTAGAGCGTGCTCACTCCC
GGCCACAAGGAGTTGGATGTCTCACCTGTCGGGCGTAGGCGTGGCTTACC
TTCTAGTATACATATATATACATATTTCTATATCTTATTAGTTAATGCAA
CAATGACCGATTGTTTATATTGATTTTAGAGCAGGATGCTGTCTGATGCC
AAACAACGTGATGTTTGTGTTGAGCGGTTTTATTTTTTACAAAAGCGAAA
ACACAGCAGCGACACGCACAGTAGCTCGACCGCGTTCGACCTCCGTGTCG
CGTTCCGTGGGCATATCGTATTGCCAACACACACCTCACACGGGCGTAGC
CGTGACTACCCACTAGTATATATATAACGCCATACAAGGCACGAAACCAC
TAGCATCGTAATGTATCGTAAGCAACAAGTGAGCCCCCATAAGTGTATGA
TCGCTCGGACCATCTTCCCTTATGTGAAAAGGTGGGGTCCCAACTCTCGC
TCGCTCTTTGAAATCACTTAAAAAAACCAAGGGATTGCTCGGTGGCAAGG
ACGAGCAGAAGCGTTTCGGTAGGGAAAAAAAAAGGGTGTACTATAATACC
TGTATTTTGTAGTTAGAAGAGTAGTTTAGAAGCGTTTCGGTAGGGAGAAA
AAAAGGGTGAACTATGATATCTGTATTTTGTAGTCGGTATACGGTTTTTC
TTGGCTCACAAAGCACATGAAAGTTATCATACACCGCCCGAGATACTCGC
TGTATCGCCCCTGCAATACTTTTACACAAAAACAATAATCCTATCGTATG
GCATCATACAGTATACATGACTTAAAAAAAAAACATGGCATCATGCGCAC
CGTATGAGCTCATACTTTTATGATATGGCGATTCCGCTTTTGTTTTGTTT
TTTCTTCTAATTTTTGCGCGTCCGTTCGCTATCATATCCCCGCCCGCCCC
GCCCCGCCCTGCCCCTCCCCTTTCCGTCCGTCCGTCCCGCATCGCGTTAC
ATCACATCACGCCGCGTTGCGTCGCGCGCCGCAACGCCAACAGATTTCGT
GGCAAGACTACCCATTCCATCGTGGAGAGAAACCTCGACGCGCTCATGTC
CACCCTGAGGAACTGCCCCGGCGGCATGTCCACGGTGACCGCCGCCGCCG
CTGCCTTCCAGTCGCTGCGCGCGGTCAGCGGCAAGAGCATCGAGGAAGAC
CGATTCGTGCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11861:4443..6754-

>mRNA_S-dermatodea_contig11861.1165.1 ID=mRNA_S-dermatodea_contig11861.1165.1|Name=mRNA_S-dermatodea_contig11861.1165.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at S-dermatodea_contig11861:4443..6754- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCATGTTTCGTACAGGTTTCCCGGCGTGGAACTAGAAGCAGCGGCGGC
ATTGTTCTCGATCCTGCAATCCGAATCGTCCAGGGGTTCCGCGAAGGCGG
CGGCAGCAGCGGCCGCGGCGGGGGCGACGGCAGGGGGATACGGGGCTGCA
GCCCCCCCGGTGTTTGCCCACGAGCCCATGCCGATGTCGGCCCTCGTGGC
GGCGACGAAGTCCTTGAGGAAGCTGGCCAGCAACGTGATCGTGTTCGAGA
GCTCGAGGCCCCTGATGAGATGGGCGAGGGGGGGGGCGGGGGGAGGGGGG
TTTGGAGCGCCCTCGATGGTTCGGCTGGTGCGGTACTTGTCCAGGCAGTG
CGATCGCGGCATGTTTCGTACAGGTTTCCCGGCGTGGAACTAGAAGCAGC
GGCGGCATTGTTCTCGATCCTGCAATCCGAATCGTCCAGGGGTTCCGCGA
AGGCGGCGGCAGCAGCGGCCGCGGCGGGGGCGACGGCAGGGGGATACGGG
GCTGCAGCCCCCCCGGTGTTTGCCCACGAGCCCATGCCGATGTCGGCCCT
CGTGGCGGCGACGAAGTCCTTGAGGAAGCTGGCCAGCAACGTGATCGTGT
TCGAGAGCTCGAGGCCCCTGATGAGATGGGCGAGGGGGGGGGCGGGGGGA
GGGGGGTTTGGAGCGCCCTCGATGGTTCGGCTGGTGCGGTACTTGTCCAG
GCAGTGCGATCGATTTCGTGGCAAGACTACCCATTCCATCGTGGAGAGAA
ACCTCGACGCGCTCATGTCCACCCTGAGGAACTGCCCCGGCGGCATGTCC
ACGGTGACCGCCGCCGCCGCTGCCTTCCAGTCGCTGCGCGCGGTCAGCGG
CAAGAGCATCGAGGAAGACCGATTCGTGCGGATTTCGTGGCAAGACTACC
CATTCCATCGTGGAGAGAAACCTCGACGCGCTCATGTCCACCCTGAGGAA
CTGCCCCGGCGGCATGTCCACGGTGACCGCCGCCGCCGCTGCCTTCCAGT
CGCTGCGCGCGGTCAGCGGCAAGAGCATCGAGGAAGACCGATTCGTGCGG
back to top