mRNA_S-dermatodea_contig1177.1116.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1177.1116.1
Unique NamemRNA_S-dermatodea_contig1177.1116.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1177.1116.1 vs. uniprot
Match: A0A6H5K3N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3N2_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 3.000e-98
Identity = 196/325 (60.31%), Postives = 217/325 (66.77%), Query Frame = 1 
Query:    1 MNAASARGGNGHVVFESTRIAEELARGGVPPGSIIADYASWDTVGNAWFARMAVEAILDMSFRHGDTPDEPHPAPPP----PSAVLRP----PRKLPFPGSALKGD-GTDVEGEVKTKS--GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE---------------EKLPAARKGEAYGGGEIRKWMFDWKAKKARARRGPLNVTVFVSDFHAERMDAVFQWVFGLEPSLLEGKATVTTVSIDTPVEMWARGPGQRQARQAHEREAADQARLHAKEIRTVDEFRAFMMLGGHQGYFNLTHGRYQASAGGGWGGAS 897
            MNA SARGGNGHV+FESTRIAEEL R                         MAVEA+LDMSFRHGD  +E H APP     P+A + P    PRKLP+PGSA+  + G   EGE +T +  GG                               XXXXXX                EKLPAAR GEAYGGGE+RKWM+DWK KKARARRGP+N+TVFVSDFHAERMDAVFQWVFGLEPSLL GK TVTTVSI+TPVEMWARG  QR+ARQAHEREAA+QAR  A+EIRTV+EFRAFMMLGGH+GYF+LTHGRYQAS GGGWGGAS
Sbjct:  123 MNAPSARGGNGHVIFESTRIAEELVR-------------------------MAVEAMLDMSFRHGDRANE-HAAPPXXXXAPAAGVAPSVLSPRKLPYPGSAVVTESGGTGEGESETAAALGGVEEPGLFSARREAAAAAARGLTLKETKRADAXXXXXXXXXXXXXXXXXRKGGGEKLPAARAGEAYGGGEMRKWMYDWKNKKARARRGPMNLTVFVSDFHAERMDAVFQWVFGLEPSLLRGKTTVTTVSIETPVEMWARGGEQREARQAHEREAAEQARQRAREIRTVEEFRAFMMLGGHRGYFDLTHGRYQASPGGGWGGAS 421
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BLAST of mRNA_S-dermatodea_contig1177.1116.1 vs. uniprot
Match: A0A6H5K892_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K892_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.190e-19
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = -2 
Query: 1686 AACVAWSDVGVPYKQTGDSVGGVAISSLKSQASWKAWLCQLVKNLEWTVEAASSLCV 1856
            AACVAWSDVGVPYKQT D+VGGV+I +LK Q SWK WLCQLVKNLEW V AASSLCV
Sbjct:  673 AACVAWSDVGVPYKQTEDAVGGVSIGALKGQGSWKPWLCQLVKNLEWAVGAASSLCV 729
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1177.1116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3N2_9PHAE3.000e-9860.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K892_9PHAE4.190e-1982.46APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1177contigS-dermatodea_contig1177:2266..4882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006430.1
Exons3
Model size1857
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1177.1116.1prot_S-dermatodea_contig1177.1116.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1177 2266..3925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.5810122-CDS-S-dermatodea_contig1177:2265..23421622924216.5810122-CDS-S-dermatodea_contig1177:2265..2342Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1177 2266..2342 +
1694079099.7351263-CDS-S-dermatodea_contig1177:2265..23421694079099.7351263-CDS-S-dermatodea_contig1177:2265..2342Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1177 2266..2342 +
1622924216.589321-CDS-S-dermatodea_contig1177:2673..32621622924216.589321-CDS-S-dermatodea_contig1177:2673..3262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1177 2674..3262 +
1694079099.7451546-CDS-S-dermatodea_contig1177:2673..32621694079099.7451546-CDS-S-dermatodea_contig1177:2673..3262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1177 2674..3262 +
1622924216.597651-CDS-S-dermatodea_contig1177:3691..39251622924216.597651-CDS-S-dermatodea_contig1177:3691..3925Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1177 3692..3925 +
1694079099.7549455-CDS-S-dermatodea_contig1177:3691..39251694079099.7549455-CDS-S-dermatodea_contig1177:3691..3925Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1177 3692..3925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.6066291-UTR-S-dermatodea_contig1177:3925..48821622924216.6066291-UTR-S-dermatodea_contig1177:3925..4882Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1177 3926..4882 +
1694079099.764985-UTR-S-dermatodea_contig1177:3925..48821694079099.764985-UTR-S-dermatodea_contig1177:3925..4882Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1177 3926..4882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1177.1116.1

>prot_S-dermatodea_contig1177.1116.1 ID=prot_S-dermatodea_contig1177.1116.1|Name=mRNA_S-dermatodea_contig1177.1116.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=300bp
MNAASARGGNGHVVFESTRIAEELARGGVPPGSIIADYASWDTVGNAWFA
RMAVEAILDMSFRHGDTPDEPHPAPPPPSAVLRPPRKLPFPGSALKGDGT
DVEGEVKTKSGGSGGGDDDAKRDDDERGVLIEGGMTEEEVKKAVDERHEE
EKLPAARKGEAYGGGEIRKWMFDWKAKKARARRGPLNVTVFVSDFHAERM
DAVFQWVFGLEPSLLEGKATVTTVSIDTPVEMWARGPGQRQARQAHEREA
ADQARLHAKEIRTVDEFRAFMMLGGHQGYFNLTHGRYQASAGGGWGGAS*
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mRNA from alignment at S-dermatodea_contig1177:2266..4882+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1177.1116.1 ID=mRNA_S-dermatodea_contig1177.1116.1|Name=mRNA_S-dermatodea_contig1177.1116.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2617bp|location=Sequence derived from alignment at S-dermatodea_contig1177:2266..4882+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACGCCGCCAGCGCACGCGGGGGCAACGGACACGTGGTCTTCGAATC
TACACGAATAGCAGAGGAGCTTGCACGGTGAGAAAGAAAGGGTTGCGATC
GCGACCACTGTTGCAAGCCTTCAACGTTTGAGAAAGTAGAGCCTCCCACG
TTGTGGACGTGTCCTCTCTACGCCAACACCCTTCAGATCCCAGTTACTCA
AGGGATGTACTTGCGTGTTGCCGCACGGTGCAAATCTCCATCCAGGCTGG
CATCACGACGATCGTTGATGCACACAACGCACCAGCCATACTCACCGCTA
TGATAGCACCGCTATGATAATATCGTGGCAACCTGATCCAGTGAACCTGG
GTCAAAGTGTGTAACCTCTCCCTCCGATTCTGCCACATTCGTTACACCTG
CATCGCAGCGGAGGCGTGCCGCCGGGTAGCATTATTGCCGACTACGCCAG
CTGGGACACTGTAGGAAACGCGTGGTTCGCAAGGATGGCCGTGGAAGCTA
TCCTAGACATGTCGTTCCGCCACGGCGACACACCGGACGAGCCCCACCCC
GCTCCCCCCCCGCCCTCCGCCGTACTACGGCCCCCGCGGAAACTTCCTTT
CCCGGGTAGCGCGTTAAAAGGCGACGGGACTGATGTAGAAGGGGAGGTCA
AGACCAAGTCTGGAGGTAGTGGTGGAGGTGACGATGACGCGAAACGGGAC
GATGATGAAAGAGGCGTTTTGATAGAGGGGGGTATGACGGAGGAGGAGGT
AAAAAAAGCGGTCGATGAGAGGCACGAGGAGGAGAAGCTGCCGGCGGCGC
GGAAGGGCGAGGCGTACGGGGGCGGGGAGATCAGGAAGTGGATGTTCGAC
TGGAAGGCAAAGAAGGCGCGCGCGCGCCGCGGCCCCTTGAACGTCACTGT
GTTCGTTTCGGACTTTCACGCCGAGAGGATGGACGCTGTGTTCCAGTGGG
TTTTCGGCTTGGAGCCGTCCCTGCTGGAGGGCAAGGCTACAGTCACGGTG
AGATGGCGGCTCGTTCGATCGGGGCGTTTGGGTTCGTGTTCGCGTCTGTG
GCCTACCGTGTGACTTTTCAGGGGAAGAATCTCGGGATTTGTTGGCTTCA
ACATCGGTGCAGGTTTAATTATCTCACGCATTGTAGGCCAGCGTCGGAGA
GCTGGCTAAACGCCCGTTAGGCACCCTCTCGACGGCTGCAGTGCCGCCCC
GTATTATTCTCTCCGGTCCCGTGGCACACGCGAGAGCGTGAATGGCTTCA
TTGAAAACGAAACGAACCGTATTTTCGTCATGCAGGCACCTTAATTCCAT
AACAGCTCGTCATCCACTTTACGACGCGAGGGATACCTCACCCGGAGCTG
AACGGGAACCGAGGCTCACAAAAGCACTGTCCCGTCCACCACCCATACCG
CTGCGTATCCGTTGAACACCCTCCAGACCGTGAGCATCGACACGCCGGTC
GAGATGTGGGCCAGGGGGCCGGGCCAAAGACAGGCGCGACAGGCCCACGA
GAGAGAGGCCGCCGACCAAGCACGCCTCCACGCAAAGGAAATCCGCACGG
TGGACGAATTTCGGGCGTTCATGATGCTGGGCGGTCATCAGGGGTACTTC
AACTTGACCCACGGTCGTTACCAGGCCAGCGCCGGCGGGGGTTGGGGAGG
GGCGTCGTAGTCCTGGGCTTGTTGCAGGAGGTAAAATAAACTCGTGCATT
TTTGGTCTATGTAGCGTGGTGGAGAACCTGGACAATTTTTTGGTTTTTGG
CGGAGGAGTACAAGCCCTACGGTGGACGGTGCGCTTGGTACCCGTGGCTG
TTTTTCGTTGCGGCTGAGGTGGTGTTCGGTTATTCTTTTCTCGTGAACGG
ACCATCAAAAGCATGCCTTCTGTTCAACAAAACGCCTCTGCAAATGTTGT
AACTCACTACAACTGCGAGCTTCAATGGTGACTGCCACGTTGGCCAACCA
TTTTCATACCGCCTGCGTTGCCTCGGTGTGGCGAAAGCCGGCCCGACGAG
ACCTTTGTGTCGCTCCAGATAAACCCGAAAGGTGCTTCCTTTTTGTGTCG
TGCCAAGGGCGGCACCATCACTAACGGTAGCATCTATAGCGAGGCACTGC
CCCAAGGCACACGTCCATCGTACGCGAGGAGTACTGGCCTGTAAAAACGT
TTGTTATATACAAAACAGCAAAATGAAGGCCAGTGCCAAATCATTGCCCC
ACATGGGACCAGCAATAAACACAGCAAACGCGTGTGGGGACACTTTTATG
CATACAAAAACAGCACAGACTGTTCCTTTGACGAGGGAACAATCCAGGAA
CGTGTTTGTACAGTCCCCAAAATTAGAAAATCCAACGCGCCACATCACGT
TAAAGTTTGCGTGAAATATCATACTGTTGCAAAGAGCGGAACGTACTTCA
CGGATTTCAATGCCGGTGTTGCACACGCTCCACGCCGAATCACGTCACGC
ACAAAGAGGACGCCGCCTCCACCGTCCACTCCAAATTCTTCACCAGCTGA
CACAGCCACGCTTTCCAAGACGCCTGGCTCTTGAGCGACGATATGGCCAC
CCCGCCCACCGAGTCCCCCGTTTGCTTGTACGGCACGCCCACGTCGGACC
ACGCGACGCACGCCGCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1177:2266..4882+

>mRNA_S-dermatodea_contig1177.1116.1 ID=mRNA_S-dermatodea_contig1177.1116.1|Name=mRNA_S-dermatodea_contig1177.1116.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at S-dermatodea_contig1177:2266..4882+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACGCCGCCAGCGCACGCGGGGGCAACGGACACGTGGTCTTCGAATC
TACACGAATAGCAGAGGAGCTTGCACGATGAACGCCGCCAGCGCACGCGG
GGGCAACGGACACGTGGTCTTCGAATCTACACGAATAGCAGAGGAGCTTG
CACGCGGAGGCGTGCCGCCGGGTAGCATTATTGCCGACTACGCCAGCTGG
GACACTGTAGGAAACGCGTGGTTCGCAAGGATGGCCGTGGAAGCTATCCT
AGACATGTCGTTCCGCCACGGCGACACACCGGACGAGCCCCACCCCGCTC
CCCCCCCGCCCTCCGCCGTACTACGGCCCCCGCGGAAACTTCCTTTCCCG
GGTAGCGCGTTAAAAGGCGACGGGACTGATGTAGAAGGGGAGGTCAAGAC
CAAGTCTGGAGGTAGTGGTGGAGGTGACGATGACGCGAAACGGGACGATG
ATGAAAGAGGCGTTTTGATAGAGGGGGGTATGACGGAGGAGGAGGTAAAA
AAAGCGGTCGATGAGAGGCACGAGGAGGAGAAGCTGCCGGCGGCGCGGAA
GGGCGAGGCGTACGGGGGCGGGGAGATCAGGAAGTGGATGTTCGACTGGA
AGGCAAAGAAGGCGCGCGCGCGCCGCGGCCCCTTGAACGTCACTGTGTTC
GTTTCGGACTTTCACGCCGAGAGGATGGACGCTGTGTTCCAGTGGGTTTT
CGGCTTGGAGCCGTCCCTGCTGGAGGGCAAGGCTACAGTCACGCGGAGGC
GTGCCGCCGGGTAGCATTATTGCCGACTACGCCAGCTGGGACACTGTAGG
AAACGCGTGGTTCGCAAGGATGGCCGTGGAAGCTATCCTAGACATGTCGT
TCCGCCACGGCGACACACCGGACGAGCCCCACCCCGCTCCCCCCCCGCCC
TCCGCCGTACTACGGCCCCCGCGGAAACTTCCTTTCCCGGGTAGCGCGTT
AAAAGGCGACGGGACTGATGTAGAAGGGGAGGTCAAGACCAAGTCTGGAG
GTAGTGGTGGAGGTGACGATGACGCGAAACGGGACGATGATGAAAGAGGC
GTTTTGATAGAGGGGGGTATGACGGAGGAGGAGGTAAAAAAAGCGGTCGA
TGAGAGGCACGAGGAGGAGAAGCTGCCGGCGGCGCGGAAGGGCGAGGCGT
ACGGGGGCGGGGAGATCAGGAAGTGGATGTTCGACTGGAAGGCAAAGAAG
GCGCGCGCGCGCCGCGGCCCCTTGAACGTCACTGTGTTCGTTTCGGACTT
TCACGCCGAGAGGATGGACGCTGTGTTCCAGTGGGTTTTCGGCTTGGAGC
CGTCCCTGCTGGAGGGCAAGGCTACAGTCACGACCGTGAGCATCGACACG
CCGGTCGAGATGTGGGCCAGGGGGCCGGGCCAAAGACAGGCGCGACAGGC
CCACGAGAGAGAGGCCGCCGACCAAGCACGCCTCCACGCAAAGGAAATCC
GCACGGTGGACGAATTTCGGGCGTTCATGATGCTGGGCGGTCATCAGGGG
TACTTCAACTTGACCCACGGTCGTTACCAGGCCAGCGCCGGCGGGGGTTG
GGGAGGGGCGTCGTAGACCGTGAGCATCGACACGCCGGTCGAGATGTGGG
CCAGGGGGCCGGGCCAAAGACAGGCGCGACAGGCCCACGAGAGAGAGGCC
GCCGACCAAGCACGCCTCCACGCAAAGGAAATCCGCACGGTGGACGAATT
TCGGGCGTTCATGATGCTGGGCGGTCATCAGGGGTACTTCAACTTGACCC
ACGGTCGTTACCAGGCCAGCGCCGGCGGGGGTTGGGGAGGGGCGTCGTAG
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