mRNA_S-dermatodea_contig1166.1063.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1166.1063.1
Unique NamemRNA_S-dermatodea_contig1166.1063.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A6H5JEB5_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB5_9PHAE)

HSP 1 Score: 482 bits (1241), Expect = 2.440e-165
Identity = 243/293 (82.94%), Postives = 271/293 (92.49%), Query Frame = 1
Query:    1 RTDAIQELAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSSQMLPDGKTLSEAFQQRKAGPLTA 879
            R D+IQELAFLDL Y+VE++RPGME ETL VL+ VSGQANS EMLALMGPSGSGKTSLLNVLAQRVP K ++G V+VDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETV+FAAKLRLPQ+TPDKEK  RVAELLELLGL+HVADG+IGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSI  +L++LT+KGMIVVCSIHQPRSNIFS FDKVLLL+KG TV+YG RSSIVKYF+ALGL+LPPETN ADWILD+TTSS ++  GKTL++A+QQR  GPL++
Sbjct:   33 RGDSIQELAFLDLKYEVENIRPGMEAETLKVLEGVSGQANSGEMLALMGPSGSGKTSLLNVLAQRVPHKSVTGGVFVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVMFAAKLRLPQSTPDKEKHERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSITHVLRTLTRKGMIVVCSIHQPRSNIFSEFDKVLLLSKGNTVYYGSRSSIVKYFEALGLELPPETNSADWILDLTTSSTIVQGGKTLTQAYQQRTIGPLSS 325          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A835YP26_9STRA (ATP-binding cassette superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP26_9STRA)

HSP 1 Score: 355 bits (910), Expect = 1.100e-114
Identity = 185/311 (59.49%), Postives = 227/311 (72.99%), Query Frame = 1
Query:   13 IQELAFLDLTYQVESVRPGM-----------------------------ETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMT---TSSQMLPDGKTLSEAF 849
            IQEL+FLDL Y +++   G                              E   + +LD VSG+A S EMLALMGPSGSGKTSLLNVLAQRVP K++ G  YVDG PL+K+FKR+MGFVFQDD+ LWNLTVRET+LFAAKLRLPQ+ P  EK+  V +L+E LGLT  A  +IGKE RRG+SGGERKR SIGVEL+T+P VLFLDEPTSGLDSSTALSI+TLL  L + G+IVVCSIHQPR+NIF+ FDKVLLL KG+  +YG +  +V YF  LGL+LPP TN ADW+LD+T   + + +LP+G T+++A+
Sbjct:   46 IQELSFLDLCYSIDAPTMGKQRVPRKDGERRRSSLFSRSRNGDAGGKAGEKAKMNILDHVSGEARSGEMLALMGPSGSGKTSLLNVLAQRVPSKNVHGGTYVDGKPLTKAFKRQMGFVFQDDLMLWNLTVRETMLFAAKLRLPQSIPLSEKEECVDDLIEKLGLTDCAHSIIGKESRRGVSGGERKRASIGVELVTAPAVLFLDEPTSGLDSSTALSIVTLLHQLARGGVIVVCSIHQPRANIFNQFDKVLLLVKGRIAYYGRQRDMVPYFSGLGLELPPATNAADWVLDLTAGTSGNNLLPNGMTITDAY 356          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A6U1MQ19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MQ19_9STRA)

HSP 1 Score: 309 bits (791), Expect = 2.670e-97
Identity = 156/284 (54.93%), Postives = 209/284 (73.59%), Query Frame = 1
Query:   13 IQELAFLDLTYQVESVRPGMETETLT----VLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSSQMLPDGKTLSEAFQ 852
            +++  F DL+YQV  V+   + +++     +L  VSG  +  +M+ALMGPSGSGKTSLLNVLAQRV Q  +SG ++++G P++KS+KRRMGFVFQDD+ L NLTVRET++++AKLRLPQ+ P   K+++V  LL+LL L   A   IG EG+RGISGGERKR +IGVELITSP ++FLDEPTSGLDS+TAL  +TLLK LT  G + + SIHQPR+NIF  F KVLLL  G  V++G   +++ YF + GL +PP TNPADW+LD+   +    DG  LS+A++
Sbjct:   67 VEQFDFQDLSYQVR-VKGAAKQQSVQGMKQILSNVSGTVHRGDMVALMGPSGSGKTSLLNVLAQRVDQSSVSGKIFINGLPVTKSWKRRMGFVFQDDLMLSNLTVRETIMYSAKLRLPQSMPTATKEAKVDALLDLLSLQKCAHSKIGSEGKRGISGGERKRTAIGVELITSPSIVFLDEPTSGLDSTTALQTVTLLKELTSLGTVFISSIHQPRANIFYQFHKVLLLQSGTPVYFGSTGNVLDYFSSQGLHVPPLTNPADWLLDVIVGNSTTKDGSELSDAWK 349          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: R1DY78_EMIHU (ABC transporter domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DY78_EMIHU)

HSP 1 Score: 250 bits (639), Expect = 3.010e-75
Identity = 137/252 (54.37%), Postives = 178/252 (70.63%), Query Frame = 1
Query:   55 SVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQ--KHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKG-MIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQ-ALGLKLPPETNPADWILDM 798
            S R     E   +LD VSG     EM+ALMGPSGSGKTSLL++LA R P+  K  +G V + G+  +K+F RR GFVFQDD+ L  LTVRET+ FAA+LRLPQ+  D+E+D RV   L+ LGL H A   IG E +RG+SGGERKR ++G EL+  P +LFLDEPTSGLD++TALS+ + L+S+ +   MI+V S+HQPRSNIFS FD++LLL+ G+  + G  +  V Y Q ALG  LP  TNPADW++D+
Sbjct:   38 SARTSNAGERKVILDDVSGCVAPSEMIALMGPSGSGKTSLLSLLAGRAPKGAKLEAGEVTLGGAAPTKAFFRRCGFVFQDDLLLAALTVRETIEFAARLRLPQSLGDEERDRRVQTTLQQLGLEHCAHTAIGSEKKRGVSGGERKRTAVGAELVARPPLLFLDEPTSGLDAATALSLTSCLQSVARTNRMILVLSVHQPRSNIFSLFDQLLLLSGGRVAYNGAAADAVAYMQGALGEALPSLTNPADWLIDL 289          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A2P6V3E0_9CHLO (ABC transporter G family member 22-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3E0_9CHLO)

HSP 1 Score: 238 bits (606), Expect = 1.730e-69
Identity = 134/270 (49.63%), Postives = 174/270 (64.44%), Query Frame = 1
Query:   91 VLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVP-QKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDM---------TTSSQMLPDGKTLSEAF-QQRKAG 867
            VL  +SG+    EMLALMGPSGSGKT+LL++L  R P Q    G V  +G PL+K  KR +GFV QDD+    LTV+ET+ FAA LRLP+  P  EK  RVA +++ LGL    D +IG + RRG+SGGERKRVS+G EL+ +P +L LDEPTSGLDSS A  ++ LL+ L   G  ++ +IHQP SNI+   D VLLL++G  +FYG  S    +F+ALG+  P   N ADWILD+         TT  +M     ++SEAF +QR  G
Sbjct:   86 VLFNISGECEPGEMLALMGPSGSGKTTLLSILGGRTPKQTRQEGRVLFNGRPLTKRVKRSIGFVLQDDLLYATLTVQETLHFAAMLRLPKRKPKAEKLERVAAVIKALGLERCKDTIIGDQLRRGVSGGERKRVSVGHELLINPAILLLDEPTSGLDSSAARKLVELLRGLASSGRAIITTIHQPSSNIYRQLDTVLLLSQGHPIFYGKGSEAAVWFEALGVPCPFGVNIADWILDLANGEVAAKQTTGEEMRQRLISVSEAFLRQRPEG 355          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A3P3YM44_PLABS (ABC transporter domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YM44_PLABS)

HSP 1 Score: 236 bits (602), Expect = 3.150e-69
Identity = 124/252 (49.21%), Postives = 180/252 (71.43%), Query Frame = 1
Query:   58 VRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKS-FKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGK-EGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKG-MIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTT 804
            V+ G +TE   +L  VSG+A   ++ A+MG SG+GKT+LLNVLA R+   ++SG++ V+G P ++S +K+ + FV QDD+ L NL+VRET+++AA LRLP +   ++K +RV +++E LGL   AD  IG  +  RGISGGERKRVSIG+EL+T P +LFLDEPTSGLD+ TA +++ ++K +   G   V+C+IHQPRS I   FD ++LL  GK +F G   + V++F +LG+K PP+TNP+D+ LD  T
Sbjct:  101 VKVGKKTEERALLKGVSGEAKPGQLCAIMGSSGAGKTTLLNVLAGRIDVGNLSGSILVNGDPRTESTWKKTVAFVEQDDLMLHNLSVRETLMYAAMLRLPSSVSKEDKANRVEKIIEQLGLKKCADSWIGSVDTARGISGGERKRVSIGIELVTDPSLLFLDEPTSGLDAFTACTVMDVVKKVAVAGNKTVLCTIHQPRSEILELFDSIILLAGGKCIFVGSVDAGVQHFASLGIKCPPQTNPSDFFLDTMT 352          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A7J8LFV0_9ROSI (ABC transporter domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8LFV0_9ROSI)

HSP 1 Score: 226 bits (577), Expect = 4.050e-69
Identity = 120/271 (44.28%), Postives = 178/271 (65.68%), Query Frame = 1
Query:    1 RTDAIQELAFLDLTYQVESVRPGMET-ETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSS 810
            +  + +E  F D+TY+V  +  GM + E   +L+ ++G  N  E+LALMGPSGSGKT+LLN+L  R+ Q  +SG++  +  P SK  K R+GFV QDD+   +LTV+ET+ +AA+LRLP+    ++K+ R  +++  LGL    D +IG    RG+SGGERKRV IG E+I +P +LFLDEPTSGLDS+TAL  I  L+ + + G  V+ +IHQP S +F  FDK++LL KG  +++G  S  + YF ++G       NPA+++LD+   +
Sbjct:   17 KVTSTKERRFTDVTYKV--IIKGMTSCEERDILNGITGAVNPGEVLALMGPSGSGKTTLLNLLGGRLIQSTVSGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKVLTRQQKEKRAVDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRTIQTLQDIAEVGKTVITTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAIDYFSSIGCSPLIAMNPAEFLLDLANGN 285          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: UPI001BB162A5 (broad substrate specificity ATP-binding cassette transporter ABCG2-like isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB162A5)

HSP 1 Score: 234 bits (597), Expect = 2.160e-68
Identity = 122/259 (47.10%), Postives = 178/259 (68.73%), Query Frame = 1
Query:   22 LAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDM 798
            ++F D+TY V++ +   +  T T+L  V+G      M A++GP+GSGKTSLL+VLA R     +SG V +DG+   K+FK   G+V QDD+ +  LT+RE + F+A LRLP+    KE+D RV ++L  LGL+HV D  +G E  RG+SGGERKR ++G+ELIT P VLFLDEPT+GLD+STA +++ LL SL+++G  ++ SIHQPR +IF  FDK+ LL +GKT+++G     ++YF ++G +     NP D+ LD+
Sbjct:   90 VSFHDITYTVKT-KENRKKVTKTILTDVNGLFKPG-MNAILGPTGSGKTSLLDVLAARKDPDGLSGQVLIDGATQPKNFKCISGYVVQDDVVMGTLTIRENLQFSAALRLPKTVGKKERDDRVDDILAELGLSHVGDSKVGTEFIRGVSGGERKRTNVGMELITKPSVLFLDEPTTGLDASTANAVMHLLASLSKRGRTIIFSIHQPRYSIFRLFDKMHLLGRGKTIYHGPAQEALEYFSSIGFECEEHNNPPDFFLDV 346          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A1J3DV99_NOCCA (ABC transporter G family member 27 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DV99_NOCCA)

HSP 1 Score: 228 bits (580), Expect = 4.580e-68
Identity = 115/263 (43.73%), Postives = 175/263 (66.54%), Query Frame = 1
Query:   22 LAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSS 810
            L F+D+TY+    +    +   ++L+ +SG A   E+LALMGPSGSGKT+LLN+L  R  Q++I G+V  +  P SK+ K R+GFV QDD+   +LTV+ET+ + A LRLP+    ++K+ R   +++ LGL    D +IG    RG+SGGERKRV IG E++T+P +L LDEPTS LDS+TAL I+ +L+S+ + G  VV +IHQP S +F  FDK+++L++G  +++G  S  + YF ++G       NPA+++LD+   +
Sbjct:  168 LKFIDITYKAIITKAMASSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNLLGGRFSQQNIGGSVSYNDKPYSKNLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKVLTKQQKEQRAISVIQELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLQSIAKAGKTVVTTIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEALSYFSSIGCSPLLSMNPAEFLLDLANGN 430          
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: UPI0005282619 (ATP-binding cassette sub-family G member 2-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005282619)

HSP 1 Score: 223 bits (567), Expect = 7.160e-68
Identity = 117/263 (44.49%), Postives = 180/263 (68.44%), Query Frame = 1
Query:   22 LAFLDLTYQVESVRPGM----ETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDM 798
            L F ++ Y V+ V+ G     +T    VL  VSG      + A++GP+GSGK+SLL++LA R     +SG++ ++G+P   +FK   G+V QDD+ +  LTVRE + F+A LRLP++  ++EK+ RV ++++ LGL+ VAD  +G +  RG+SGGERKR +IG+ELIT P +LFLDEPT+GLD+STA +++ LLK + ++G  ++ SIHQPR +IF  FD + LL  G+T+++G     ++YFQ++G +  P  NPAD+ LD+
Sbjct:   38 LTFHNICYDVK-VKTGFFCCQKTVEKEVLRDVSGIMRPG-LNAILGPTGSGKSSLLDILAARKDPHGLSGDILINGAPQPANFKCTSGYVVQDDVVMGTLTVRENLKFSAALRLPKSVKEQEKNERVNQIIKELGLSQVADSKVGTQFTRGVSGGERKRTNIGMELITDPAILFLDEPTTGLDASTANAVLLLLKRMAKQGKTIIFSIHQPRYSIFRLFDNLTLLAAGRTLYHGPAQHAIEYFQSIGYECEPYNNPADFFLDI 298          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB5_9PHAE2.440e-16582.94ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835YP26_9STRA1.100e-11459.49ATP-binding cassette superfamily n=1 Tax=Tribonema... [more]
A0A6U1MQ19_9STRA2.670e-9754.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1DY78_EMIHU3.010e-7554.37ABC transporter domain-containing protein n=3 Tax=... [more]
A0A2P6V3E0_9CHLO1.730e-6949.63ABC transporter G family member 22-like n=1 Tax=Mi... [more]
A0A3P3YM44_PLABS3.150e-6949.21ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7J8LFV0_9ROSI4.050e-6944.28ABC transporter domain-containing protein n=2 Tax=... [more]
UPI001BB162A52.160e-6847.10broad substrate specificity ATP-binding cassette t... [more]
A0A1J3DV99_NOCCA4.580e-6843.73ABC transporter G family member 27 (Fragment) n=1 ... [more]
UPI00052826197.160e-6844.49ATP-binding cassette sub-family G member 2-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1166contigS-dermatodea_contig1166:9014..12440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score459.1
Seed ortholog evalue1.5e-126
Seed eggNOG ortholog2880.D8LI56
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size880
Cds size879
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1166.1063.1prot_S-dermatodea_contig1166.1063.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1166 9015..12440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.2121663-CDS-S-dermatodea_contig1166:9014..91451622924213.2121663-CDS-S-dermatodea_contig1166:9014..9145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 9015..9145 -
1694079097.3515594-CDS-S-dermatodea_contig1166:9014..91451694079097.3515594-CDS-S-dermatodea_contig1166:9014..9145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 9015..9145 -
1622924213.2232382-CDS-S-dermatodea_contig1166:9720..99121622924213.2232382-CDS-S-dermatodea_contig1166:9720..9912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 9721..9912 -
1694079097.3610084-CDS-S-dermatodea_contig1166:9720..99121694079097.3610084-CDS-S-dermatodea_contig1166:9720..9912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 9721..9912 -
1622924213.2330737-CDS-S-dermatodea_contig1166:10641..109121622924213.2330737-CDS-S-dermatodea_contig1166:10641..10912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 10642..10912 -
1694079097.3733323-CDS-S-dermatodea_contig1166:10641..109121694079097.3733323-CDS-S-dermatodea_contig1166:10641..10912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 10642..10912 -
1622924213.2431111-CDS-S-dermatodea_contig1166:11692..118361622924213.2431111-CDS-S-dermatodea_contig1166:11692..11836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 11693..11836 -
1694079097.3816326-CDS-S-dermatodea_contig1166:11692..118361694079097.3816326-CDS-S-dermatodea_contig1166:11692..11836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 11693..11836 -
1622924213.2505887-CDS-S-dermatodea_contig1166:12299..124401622924213.2505887-CDS-S-dermatodea_contig1166:12299..12440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 12300..12440 -
1694079097.398029-CDS-S-dermatodea_contig1166:12299..124401694079097.398029-CDS-S-dermatodea_contig1166:12299..12440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 12300..12440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1166.1063.1

>prot_S-dermatodea_contig1166.1063.1 ID=prot_S-dermatodea_contig1166.1063.1|Name=mRNA_S-dermatodea_contig1166.1063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=293bp
RTDAIQELAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGP
SGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCL
WNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKE
GRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSL
TQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALG
LKLPPETNPADWILDMTTSSQMLPDGKTLSEAFQQRKAGPLTA
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mRNA from alignment at S-dermatodea_contig1166:9014..12440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1166.1063.1 ID=mRNA_S-dermatodea_contig1166.1063.1|Name=mRNA_S-dermatodea_contig1166.1063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3427bp|location=Sequence derived from alignment at S-dermatodea_contig1166:9014..12440- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGACCGATGCCATCCAGGAGCTAGCCTTCCTCGACCTTACTTATCAGGT GGAGAGCGTGAGGCCGGGAATGGAGACGGAGACCCTCACGGTCCTCGACC GTGTGTCCGGCCAAGCGAACAGCAAGGAGATGCTTGCCTTGGTGAGCGCA ATTTTGTATTGTGCCACGAGTGCATCTGTGTACAACCTCGTTTCGTTTCG GGTGTGTATATACGTATACATACGGCCGGTCGGAGGATATTGCCACATCT TGCCTCCCCCGACCGCCCCAACATCGCAAGCTTTTGGTAACAACCGCTGT AAGGTCGTCTGCACAACTGAACCGGGCGGGAAGGGGGAGGGGTGTGTGAC GAAAACAACAGGGCGTTTTACCCCTTGAACGGTGTCGTGTGTAAAACCCT TCTAGCGTTATGTGGAACCTCTTGCAAGCTAGTGAGTGGAGACTAACAAC TGTCATTTTTTTCTCGAGTAAGCGGCTGCAAGAATCGAGGCGTTTTCGAA CCTAGCGCAGACACAGGTTACACATCCTGTTCGCGTGTTGTCAGCCGATG ATAAGAGTGGCCCCGCACCGCGGCTGCGCGCGGCGTTCTCCTCGATTCCC ACAGATGGGACCCTCGGGGAGCGGAAAGACCAGCCTCCTAAACGTCCTGG CGCAGAGGGTGCCGCAGAAGCACATTAGCGGCAACGTCTACGTCGACGGC AGCCCCCTGTCCAAGTCCTTCAAGCGCCGGATGGGCTTCGTTTTCCAGGT GCGGCGGAAGAGTTTAGGGGGTTAGCGTTCAGGTTCAAGGTTTCCTACGG TCGCAACCGCAGCATGTATGAGACTGCCTTGTGCCCCCTTCCTCGACAGG GGAAGGGTGAAGGCTTGAAGGGCGTCAGCAGCCTCGCGTCGAGTCGAAGA ACGACGCCGGCGCTTGTTGCGCACCGCCGCTTAGCTCTTTTGCGACTGGA CCTGTTGTCGGGACCATCTACCCGCGCAGTGCTTCACGTCGAACCTTGAC CGAACGGTAGCTACTCATCGCCGTATGCATAGTAGCTGCGGTGGATTACT GATGATAAACCTGCCACGCTTAGCTTACATGTACGGCGGTGTCCTTGCGC GTGCACCCGTCACCGCGATGTACCCGTGGTGGTGATAGTCGGCGCAAAAG CGGACTAAGCCCCAAAAGGGTTAGTGAGAGCGGAAGCAGCCGTGAGCGAG TGCGAAAGGAGCAACCCGCATTGCGCGGCGAAGAAGTAGTACAAACGCCG CTAGCGAGCGCAATGCGAGGAAACGCGCTCATGTCCGATCTTGTGCCTGT TTGCGTGCGTGAATTAAAACTGGATGTGCGGTTTTGTTTGCTCGTCTGTG TTCGCGTTGTTAGTCGTCCGATTTGCGAACAAGATTGGGCGGGAGTCTCT TCTCCACGACGAGCGCGATGCATACTACAGTACCGAACTCATAAAAAAAC ACAATATAAAACATCAACATCAAGACCAAGGTCAAACCAAACCCCTCCTG CTCTCCGATTCACCCCCCAATCTCACAGGATGACATGTGCCTGTGGAATC TCACCGTCCGAGAGACGGTGTTGTTCGCCGCCAAGCTACGCCTCCCTCAG GCCACCCCGGACAAAGAAAAGGACTCCCGCGTCGCGGAACTCCTCGAGCT TCTGGGGCTAACTCACGTCGCTGACGGTGTCATCGGCAAGGAGGGAAGGA GGGGCATCTCCGGAGGGGAGCGCAAGAGGGTCAGCATTGGGGTGGAGCTC ATCACCAGCCCCGACGTGCTATTCCTCGACGAGCCTACGTCCGGGCTTGG TGCGTTATTTTCCCCTACCTCTTGATGACATTTTAGGGGCTGTTGGAGCG GGCGCGTTGCTCGAGATTAGTGTTTTTTGTGCGGACGGGTGGCAGGAGAG GGGGAGGGCGAGGGCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGTTTTTTTTTTTTTTGTTTTTCCCAGCCCCCAAACTTTTTAAATTTTTT TTTTTGTACTGGGGACTCCTTCCACAACACCCCCCNNNNNNNNNNGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGTGGTGGTTGTTTTTTCTTCCTTGAATATTTAGGCATTCGT AGATGGAGAGATGGGATGATGCGTTGACCACGTGCGGGATTCGGGTAGGG CCGACCAGTCGTACGTGAGCCGCACGCACACACACGTGCATCTTTGCTTT TTCGGGATTCCTGGAATTTTTCACCCGTTTGAGTTCAGCTAAAGTAAAGT CACATTGGAATGTGACTTGCTGCTGTCGGTCGTACATACGCCCGTTTGTG GCGGGAGGTTGCCCTTCGTTTGTTTGACAGGCTGCCATCCCTCTTCGCAA CAACGACAGACCAAAAGGGCTAACCTCTGCACCCCCCCCCCCGCTCTCCC GCTCTCCCTCCCTCCTCACCCCCTGATGTGCATTGGTCTCGGCCCGTTCT AAATCGGTACCGATCGCGCCGACCACAGACTCGAGCACGGCCCTTAGCAT CATAACGCTGCTGAAATCCTTGACTCAGAAGGGGATGATCGTGGTGTGCT CCATCCATCAGCCCCGGTCCAACATCTTCAGCGCGTTCGACAAGGTCCTT TTGCTGAACAAGGGCAAGACGGTGTTCTACGGCGGCCGGAGCTCCATCGT CAAGTATTTCCAGGCCTTGGGTAAGTATATACAGGTCATATTTTTACATT ACGTCTTTGCGTATAGCCCCCCCCCCCCCCCCCAACAATACAACTGTTTG TTGATAAGCGCTGTCCCTGGGATGCTTTTGGGTGAAGATGGCCAGAGATA CTCTATCGAGGGGCATTCTTCTCCAACCCCGTCCGATGCCGCCCTGTCAA AAATAGTCGCTCAGGCAAGCACGCCATTTTTGTTTTTGTGTTTTTGTCGC GTGTTTGTAGCCCGCCCGACTTCGTTCTTGGGTTCTGCTGATCGCTCGAC ACTCCGTGGGTGCGTGTGTTGCCCTCTTTTAAATTATTCACTCAGATCCT CCACTTCAATACGAGAAAGCGAAAACTATACACTCGTTTCCCCCCCCCCC CAAGTGCGGCGGTACTTACGTGATATTCTAAACCAGGTGCGAGAAGCCCC ATGTAACATCACGAAGCGTGGATAAACATATCTATCGATGTTTATACCGG TATGCATACGACGCACGAGATCGAAACACGTCCCCCCTCCCACCTCCCCG TCGCTGCTCGCTTTGTCCCTTGTCACACGTTACCCTTGACCGAAGGCTTG AAACTCCCGCCGGAGACCAACCCTGCGGATTGGATCCTCGACATGACTAC CTCGTCACAAATGCTGCCAGACGGCAAGACCCTGTCCGAGGCGTTCCAAC AGCGCAAGGCCGGCCCTCTCACGGCAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1166:9014..12440-

>mRNA_S-dermatodea_contig1166.1063.1 ID=mRNA_S-dermatodea_contig1166.1063.1|Name=mRNA_S-dermatodea_contig1166.1063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at S-dermatodea_contig1166:9014..12440- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGACCGATGCCATCCAGGAGCTAGCCTTCCTCGACCTTACTTATCAGGT
GGAGAGCGTGAGGCCGGGAATGGAGACGGAGACCCTCACGGTCCTCGACC
GTGTGTCCGGCCAAGCGAACAGCAAGGAGATGCTTGCCTTGAGGACCGAT
GCCATCCAGGAGCTAGCCTTCCTCGACCTTACTTATCAGGTGGAGAGCGT
GAGGCCGGGAATGGAGACGGAGACCCTCACGGTCCTCGACCGTGTGTCCG
GCCAAGCGAACAGCAAGGAGATGCTTGCCTTGATGGGACCCTCGGGGAGC
GGAAAGACCAGCCTCCTAAACGTCCTGGCGCAGAGGGTGCCGCAGAAGCA
CATTAGCGGCAACGTCTACGTCGACGGCAGCCCCCTGTCCAAGTCCTTCA
AGCGCCGGATGGGCTTCGTTTTCCAGATGGGACCCTCGGGGAGCGGAAAG
ACCAGCCTCCTAAACGTCCTGGCGCAGAGGGTGCCGCAGAAGCACATTAG
CGGCAACGTCTACGTCGACGGCAGCCCCCTGTCCAAGTCCTTCAAGCGCC
GGATGGGCTTCGTTTTCCAGGATGACATGTGCCTGTGGAATCTCACCGTC
CGAGAGACGGTGTTGTTCGCCGCCAAGCTACGCCTCCCTCAGGCCACCCC
GGACAAAGAAAAGGACTCCCGCGTCGCGGAACTCCTCGAGCTTCTGGGGC
TAACTCACGTCGCTGACGGTGTCATCGGCAAGGAGGGAAGGAGGGGCATC
TCCGGAGGGGAGCGCAAGAGGGTCAGCATTGGGGTGGAGCTCATCACCAG
CCCCGACGTGCTATTCCTCGACGAGCCTACGTCCGGGCTTGGATGACATG
TGCCTGTGGAATCTCACCGTCCGAGAGACGGTGTTGTTCGCCGCCAAGCT
ACGCCTCCCTCAGGCCACCCCGGACAAAGAAAAGGACTCCCGCGTCGCGG
AACTCCTCGAGCTTCTGGGGCTAACTCACGTCGCTGACGGTGTCATCGGC
AAGGAGGGAAGGAGGGGCATCTCCGGAGGGGAGCGCAAGAGGGTCAGCAT
TGGGGTGGAGCTCATCACCAGCCCCGACGTGCTATTCCTCGACGAGCCTA
CGTCCGGGCTTGACTCGAGCACGGCCCTTAGCATCATAACGCTGCTGAAA
TCCTTGACTCAGAAGGGGATGATCGTGGTGTGCTCCATCCATCAGCCCCG
GTCCAACATCTTCAGCGCGTTCGACAAGGTCCTTTTGCTGAACAAGGGCA
AGACGGTGTTCTACGGCGGCCGGAGCTCCATCGTCAAGTATTTCCAGGCC
TTGGACTCGAGCACGGCCCTTAGCATCATAACGCTGCTGAAATCCTTGAC
TCAGAAGGGGATGATCGTGGTGTGCTCCATCCATCAGCCCCGGTCCAACA
TCTTCAGCGCGTTCGACAAGGTCCTTTTGCTGAACAAGGGCAAGACGGTG
TTCTACGGCGGCCGGAGCTCCATCGTCAAGTATTTCCAGGCCTTGGGCTT
GAAACTCCCGCCGGAGACCAACCCTGCGGATTGGATCCTCGACATGACTA
CCTCGTCACAAATGCTGCCAGACGGCAAGACCCTGTCCGAGGCGTTCCAA
CAGCGCAAGGCCGGCCCTCTCACGGCAGCTTGAAACTCCCGCCGGAGACC
AACCCTGCGGATTGGATCCTCGACATGACTACCTCGTCACAAATGCTGCC
AGACGGCAAGACCCTGTCCGAGGCGTTCCAACAGCGCAAGGCCGGCCCTC
TCACGGCA
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