mRNA_S-dermatodea_contig1166.1063.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A6H5JEB5_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB5_9PHAE) HSP 1 Score: 482 bits (1241), Expect = 2.440e-165 Identity = 243/293 (82.94%), Postives = 271/293 (92.49%), Query Frame = 1
Query: 1 RTDAIQELAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSSQMLPDGKTLSEAFQQRKAGPLTA 879
R D+IQELAFLDL Y+VE++RPGME ETL VL+ VSGQANS EMLALMGPSGSGKTSLLNVLAQRVP K ++G V+VDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETV+FAAKLRLPQ+TPDKEK RVAELLELLGL+HVADG+IGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSI +L++LT+KGMIVVCSIHQPRSNIFS FDKVLLL+KG TV+YG RSSIVKYF+ALGL+LPPETN ADWILD+TTSS ++ GKTL++A+QQR GPL++
Sbjct: 33 RGDSIQELAFLDLKYEVENIRPGMEAETLKVLEGVSGQANSGEMLALMGPSGSGKTSLLNVLAQRVPHKSVTGGVFVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVMFAAKLRLPQSTPDKEKHERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSITHVLRTLTRKGMIVVCSIHQPRSNIFSEFDKVLLLSKGNTVYYGSRSSIVKYFEALGLELPPETNSADWILDLTTSSTIVQGGKTLTQAYQQRTIGPLSS 325
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A835YP26_9STRA (ATP-binding cassette superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP26_9STRA) HSP 1 Score: 355 bits (910), Expect = 1.100e-114 Identity = 185/311 (59.49%), Postives = 227/311 (72.99%), Query Frame = 1
Query: 13 IQELAFLDLTYQVESVRPGM-----------------------------ETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMT---TSSQMLPDGKTLSEAF 849
IQEL+FLDL Y +++ G E + +LD VSG+A S EMLALMGPSGSGKTSLLNVLAQRVP K++ G YVDG PL+K+FKR+MGFVFQDD+ LWNLTVRET+LFAAKLRLPQ+ P EK+ V +L+E LGLT A +IGKE RRG+SGGERKR SIGVEL+T+P VLFLDEPTSGLDSSTALSI+TLL L + G+IVVCSIHQPR+NIF+ FDKVLLL KG+ +YG + +V YF LGL+LPP TN ADW+LD+T + + +LP+G T+++A+
Sbjct: 46 IQELSFLDLCYSIDAPTMGKQRVPRKDGERRRSSLFSRSRNGDAGGKAGEKAKMNILDHVSGEARSGEMLALMGPSGSGKTSLLNVLAQRVPSKNVHGGTYVDGKPLTKAFKRQMGFVFQDDLMLWNLTVRETMLFAAKLRLPQSIPLSEKEECVDDLIEKLGLTDCAHSIIGKESRRGVSGGERKRASIGVELVTAPAVLFLDEPTSGLDSSTALSIVTLLHQLARGGVIVVCSIHQPRANIFNQFDKVLLLVKGRIAYYGRQRDMVPYFSGLGLELPPATNAADWVLDLTAGTSGNNLLPNGMTITDAY 356
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A6U1MQ19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MQ19_9STRA) HSP 1 Score: 309 bits (791), Expect = 2.670e-97 Identity = 156/284 (54.93%), Postives = 209/284 (73.59%), Query Frame = 1
Query: 13 IQELAFLDLTYQVESVRPGMETETLT----VLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSSQMLPDGKTLSEAFQ 852
+++ F DL+YQV V+ + +++ +L VSG + +M+ALMGPSGSGKTSLLNVLAQRV Q +SG ++++G P++KS+KRRMGFVFQDD+ L NLTVRET++++AKLRLPQ+ P K+++V LL+LL L A IG EG+RGISGGERKR +IGVELITSP ++FLDEPTSGLDS+TAL +TLLK LT G + + SIHQPR+NIF F KVLLL G V++G +++ YF + GL +PP TNPADW+LD+ + DG LS+A++
Sbjct: 67 VEQFDFQDLSYQVR-VKGAAKQQSVQGMKQILSNVSGTVHRGDMVALMGPSGSGKTSLLNVLAQRVDQSSVSGKIFINGLPVTKSWKRRMGFVFQDDLMLSNLTVRETIMYSAKLRLPQSMPTATKEAKVDALLDLLSLQKCAHSKIGSEGKRGISGGERKRTAIGVELITSPSIVFLDEPTSGLDSTTALQTVTLLKELTSLGTVFISSIHQPRANIFYQFHKVLLLQSGTPVYFGSTGNVLDYFSSQGLHVPPLTNPADWLLDVIVGNSTTKDGSELSDAWK 349
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: R1DY78_EMIHU (ABC transporter domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DY78_EMIHU) HSP 1 Score: 250 bits (639), Expect = 3.010e-75 Identity = 137/252 (54.37%), Postives = 178/252 (70.63%), Query Frame = 1
Query: 55 SVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQ--KHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKG-MIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQ-ALGLKLPPETNPADWILDM 798
S R E +LD VSG EM+ALMGPSGSGKTSLL++LA R P+ K +G V + G+ +K+F RR GFVFQDD+ L LTVRET+ FAA+LRLPQ+ D+E+D RV L+ LGL H A IG E +RG+SGGERKR ++G EL+ P +LFLDEPTSGLD++TALS+ + L+S+ + MI+V S+HQPRSNIFS FD++LLL+ G+ + G + V Y Q ALG LP TNPADW++D+
Sbjct: 38 SARTSNAGERKVILDDVSGCVAPSEMIALMGPSGSGKTSLLSLLAGRAPKGAKLEAGEVTLGGAAPTKAFFRRCGFVFQDDLLLAALTVRETIEFAARLRLPQSLGDEERDRRVQTTLQQLGLEHCAHTAIGSEKKRGVSGGERKRTAVGAELVARPPLLFLDEPTSGLDAATALSLTSCLQSVARTNRMILVLSVHQPRSNIFSLFDQLLLLSGGRVAYNGAAADAVAYMQGALGEALPSLTNPADWLIDL 289
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A2P6V3E0_9CHLO (ABC transporter G family member 22-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3E0_9CHLO) HSP 1 Score: 238 bits (606), Expect = 1.730e-69 Identity = 134/270 (49.63%), Postives = 174/270 (64.44%), Query Frame = 1
Query: 91 VLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVP-QKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDM---------TTSSQMLPDGKTLSEAF-QQRKAG 867
VL +SG+ EMLALMGPSGSGKT+LL++L R P Q G V +G PL+K KR +GFV QDD+ LTV+ET+ FAA LRLP+ P EK RVA +++ LGL D +IG + RRG+SGGERKRVS+G EL+ +P +L LDEPTSGLDSS A ++ LL+ L G ++ +IHQP SNI+ D VLLL++G +FYG S +F+ALG+ P N ADWILD+ TT +M ++SEAF +QR G
Sbjct: 86 VLFNISGECEPGEMLALMGPSGSGKTTLLSILGGRTPKQTRQEGRVLFNGRPLTKRVKRSIGFVLQDDLLYATLTVQETLHFAAMLRLPKRKPKAEKLERVAAVIKALGLERCKDTIIGDQLRRGVSGGERKRVSVGHELLINPAILLLDEPTSGLDSSAARKLVELLRGLASSGRAIITTIHQPSSNIYRQLDTVLLLSQGHPIFYGKGSEAAVWFEALGVPCPFGVNIADWILDLANGEVAAKQTTGEEMRQRLISVSEAFLRQRPEG 355
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A3P3YM44_PLABS (ABC transporter domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YM44_PLABS) HSP 1 Score: 236 bits (602), Expect = 3.150e-69 Identity = 124/252 (49.21%), Postives = 180/252 (71.43%), Query Frame = 1
Query: 58 VRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKS-FKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGK-EGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKG-MIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTT 804
V+ G +TE +L VSG+A ++ A+MG SG+GKT+LLNVLA R+ ++SG++ V+G P ++S +K+ + FV QDD+ L NL+VRET+++AA LRLP + ++K +RV +++E LGL AD IG + RGISGGERKRVSIG+EL+T P +LFLDEPTSGLD+ TA +++ ++K + G V+C+IHQPRS I FD ++LL GK +F G + V++F +LG+K PP+TNP+D+ LD T
Sbjct: 101 VKVGKKTEERALLKGVSGEAKPGQLCAIMGSSGAGKTTLLNVLAGRIDVGNLSGSILVNGDPRTESTWKKTVAFVEQDDLMLHNLSVRETLMYAAMLRLPSSVSKEDKANRVEKIIEQLGLKKCADSWIGSVDTARGISGGERKRVSIGIELVTDPSLLFLDEPTSGLDAFTACTVMDVVKKVAVAGNKTVLCTIHQPRSEILELFDSIILLAGGKCIFVGSVDAGVQHFASLGIKCPPQTNPSDFFLDTMT 352
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A7J8LFV0_9ROSI (ABC transporter domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8LFV0_9ROSI) HSP 1 Score: 226 bits (577), Expect = 4.050e-69 Identity = 120/271 (44.28%), Postives = 178/271 (65.68%), Query Frame = 1
Query: 1 RTDAIQELAFLDLTYQVESVRPGMET-ETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSS 810
+ + +E F D+TY+V + GM + E +L+ ++G N E+LALMGPSGSGKT+LLN+L R+ Q +SG++ + P SK K R+GFV QDD+ +LTV+ET+ +AA+LRLP+ ++K+ R +++ LGL D +IG RG+SGGERKRV IG E+I +P +LFLDEPTSGLDS+TAL I L+ + + G V+ +IHQP S +F FDK++LL KG +++G S + YF ++G NPA+++LD+ +
Sbjct: 17 KVTSTKERRFTDVTYKV--IIKGMTSCEERDILNGITGAVNPGEVLALMGPSGSGKTTLLNLLGGRLIQSTVSGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKVLTRQQKEKRAVDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRTIQTLQDIAEVGKTVITTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAIDYFSSIGCSPLIAMNPAEFLLDLANGN 285
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: UPI001BB162A5 (broad substrate specificity ATP-binding cassette transporter ABCG2-like isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB162A5) HSP 1 Score: 234 bits (597), Expect = 2.160e-68 Identity = 122/259 (47.10%), Postives = 178/259 (68.73%), Query Frame = 1
Query: 22 LAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDM 798
++F D+TY V++ + + T T+L V+G M A++GP+GSGKTSLL+VLA R +SG V +DG+ K+FK G+V QDD+ + LT+RE + F+A LRLP+ KE+D RV ++L LGL+HV D +G E RG+SGGERKR ++G+ELIT P VLFLDEPT+GLD+STA +++ LL SL+++G ++ SIHQPR +IF FDK+ LL +GKT+++G ++YF ++G + NP D+ LD+
Sbjct: 90 VSFHDITYTVKT-KENRKKVTKTILTDVNGLFKPG-MNAILGPTGSGKTSLLDVLAARKDPDGLSGQVLIDGATQPKNFKCISGYVVQDDVVMGTLTIRENLQFSAALRLPKTVGKKERDDRVDDILAELGLSHVGDSKVGTEFIRGVSGGERKRTNVGMELITKPSVLFLDEPTTGLDASTANAVMHLLASLSKRGRTIIFSIHQPRYSIFRLFDKMHLLGRGKTIYHGPAQEALEYFSSIGFECEEHNNPPDFFLDV 346
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: A0A1J3DV99_NOCCA (ABC transporter G family member 27 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DV99_NOCCA) HSP 1 Score: 228 bits (580), Expect = 4.580e-68 Identity = 115/263 (43.73%), Postives = 175/263 (66.54%), Query Frame = 1
Query: 22 LAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDMTTSS 810
L F+D+TY+ + + ++L+ +SG A E+LALMGPSGSGKT+LLN+L R Q++I G+V + P SK+ K R+GFV QDD+ +LTV+ET+ + A LRLP+ ++K+ R +++ LGL D +IG RG+SGGERKRV IG E++T+P +L LDEPTS LDS+TAL I+ +L+S+ + G VV +IHQP S +F FDK+++L++G +++G S + YF ++G NPA+++LD+ +
Sbjct: 168 LKFIDITYKAIITKAMASSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNLLGGRFSQQNIGGSVSYNDKPYSKNLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKVLTKQQKEQRAISVIQELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLQSIAKAGKTVVTTIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEALSYFSSIGCSPLLSMNPAEFLLDLANGN 430
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Match: UPI0005282619 (ATP-binding cassette sub-family G member 2-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005282619) HSP 1 Score: 223 bits (567), Expect = 7.160e-68 Identity = 117/263 (44.49%), Postives = 180/263 (68.44%), Query Frame = 1
Query: 22 LAFLDLTYQVESVRPGM----ETETLTVLDRVSGQANSKEMLALMGPSGSGKTSLLNVLAQRVPQKHISGNVYVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVLFAAKLRLPQATPDKEKDSRVAELLELLGLTHVADGVIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIITLLKSLTQKGMIVVCSIHQPRSNIFSAFDKVLLLNKGKTVFYGGRSSIVKYFQALGLKLPPETNPADWILDM 798
L F ++ Y V+ V+ G +T VL VSG + A++GP+GSGK+SLL++LA R +SG++ ++G+P +FK G+V QDD+ + LTVRE + F+A LRLP++ ++EK+ RV ++++ LGL+ VAD +G + RG+SGGERKR +IG+ELIT P +LFLDEPT+GLD+STA +++ LLK + ++G ++ SIHQPR +IF FD + LL G+T+++G ++YFQ++G + P NPAD+ LD+
Sbjct: 38 LTFHNICYDVK-VKTGFFCCQKTVEKEVLRDVSGIMRPG-LNAILGPTGSGKSSLLDILAARKDPHGLSGDILINGAPQPANFKCTSGYVVQDDVVMGTLTVRENLKFSAALRLPKSVKEQEKNERVNQIIKELGLSQVADSKVGTQFTRGVSGGERKRTNIGMELITDPAILFLDEPTTGLDASTANAVLLLLKRMAKQGKTIIFSIHQPRYSIFRLFDNLTLLAAGRTLYHGPAQHAIEYFQSIGYECEPYNNPADFFLDI 298 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1166.1063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1166.1063.1 >prot_S-dermatodea_contig1166.1063.1 ID=prot_S-dermatodea_contig1166.1063.1|Name=mRNA_S-dermatodea_contig1166.1063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=293bp RTDAIQELAFLDLTYQVESVRPGMETETLTVLDRVSGQANSKEMLALMGPback to top mRNA from alignment at S-dermatodea_contig1166:9014..12440- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1166.1063.1 ID=mRNA_S-dermatodea_contig1166.1063.1|Name=mRNA_S-dermatodea_contig1166.1063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3427bp|location=Sequence derived from alignment at S-dermatodea_contig1166:9014..12440- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1166:9014..12440- >mRNA_S-dermatodea_contig1166.1063.1 ID=mRNA_S-dermatodea_contig1166.1063.1|Name=mRNA_S-dermatodea_contig1166.1063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at S-dermatodea_contig1166:9014..12440- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |