mRNA_S-dermatodea_contig1165.1051.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1165.1051.1
Unique NamemRNA_S-dermatodea_contig1165.1051.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: D8LDN4_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN4_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.030e-57
Identity = 104/139 (74.82%), Postives = 114/139 (82.01%), Query Frame = 3
Query:    3 VMSGGESGMGACLSEVETLAFLKVKREEAGLTH--ARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSL-------TAGAMK---PPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYP 383
            V+SGGESGMGACL EVETLAFLKVKR+EAGLT   +RFAELASWFYRRSA+GGVDHVCLVFRGGGLSLREAM+ RSP +       TA  M    P LL+W   EVV VARGLLEG+AFLH VGL+HADIKP+NVALYP
Sbjct:  140 VLSGGESGMGACLHEVETLAFLKVKRQEAGLTRERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPISTAQSGVTASNMPSSAPVLLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYP 278          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: A0A7S3UQ19_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQ19_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.990e-7
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:   39 LSEVETLAFLKVK----REEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYPS 386
            L EVE L +L +K     +E G     FA L +W  R      ++ + LVF GGG+SLR+ +  +S  L A             EV+ +   L+ G+ F H +GLIH DIKPEN+ L P+
Sbjct:   35 LKEVEILTYLHLKAGYKNDEDGKNSLFFAPLVAW--REDPT--LNTLFLVFPGGGVSLRDFLESQSEHLQA------------EEVLELFHCLVLGLDFFHNLGLIHTDIKPENIILTPA 138          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: UPI0010359C57 (serine/threonine-protein kinase AFC1-like isoform X1 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010359C57)

HSP 1 Score: 53.5 bits (127), Expect = 1.590e-5
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYPS 386
            A + E++ L   K+ R + G T  R  ++ +WF  R      +HVC+VF   G SL + + + S             S+ T  V    R LLE VAF+H + LIH D+KPEN+ L  S
Sbjct:  149 AAMIEIDVLQ--KLSRHDIGGT--RCVQIRNWFDYR------NHVCIVFEKLGPSLYDFLRKNS-----------YRSFPTDLVREFGRQLLESVAFMHDLHLIHTDLKPENILLVSS 245          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: D7TQF1_VITVI (Protein kinase domain-containing protein n=11 Tax=Vitis TaxID=3603 RepID=D7TQF1_VITVI)

HSP 1 Score: 52.0 bits (123), Expect = 5.390e-5
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYPSN 389
            A + E++ L   K+ R + G T  R  ++ +WF  R      +H+C+VF   G SL + + + S             S+    V  + R LLE VAF+H + LIH D+KPEN+ L  S+
Sbjct:  130 AAMIEIDVLQ--KLARHDVGGT--RCVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNS-----------YRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENILLVSSD 227          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: A0A8B7BYM7_PHODC (serine/threonine-protein kinase AFC1-like isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7BYM7_PHODC)

HSP 1 Score: 52.0 bits (123), Expect = 5.390e-5
Identity = 37/118 (31.36%), Postives = 58/118 (49.15%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYPS 386
            A + E++ L  L     +A ++  R+ ++ +WF  R      +H+C+VF   G SL + +   S             S+    V  + R LLE VAF+H + LIH D+KPEN+ L  S
Sbjct:  134 AAMIEIDVLQRLA----KADISGTRYVQIRNWFDYR------NHICIVFEKLGPSLYDFLRRNS-----------YRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENILLVSS 230          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: B9IIV2_POPTR (Protein kinase domain-containing protein n=15 Tax=Saliceae TaxID=238069 RepID=B9IIV2_POPTR)

HSP 1 Score: 52.0 bits (123), Expect = 5.410e-5
Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYPS 386
            A ++E++ L   ++ R + G T  R  ++ +WF  R      +H+C+VF   G SL + + + S             S+    V  + R LLE VAF+H + LIH D+KPEN+ L  S
Sbjct:  134 AAMTEIDVLQ--RLARHDIGST--RCVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNS-----------YRSFPIDLVRELGRQLLESVAFMHDLHLIHTDLKPENILLVSS 230          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: A0A438DWM9_VITVI (Serine/threonine-protein kinase AFC1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DWM9_VITVI)

HSP 1 Score: 52.0 bits (123), Expect = 5.440e-5
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYPSN 389
            A + E++ L   K+ R + G T  R  ++ +WF  R      +H+C+VF   G SL + + + S             S+    V  + R LLE VAF+H + LIH D+KPEN+ L  S+
Sbjct:  130 AAMIEIDVLQ--KLARHDVGGT--RCVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNS-----------YRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENILLVSSD 227          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: A0A833VES5_9POAL (Serine/threonine-protein kinase AFC1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VES5_9POAL)

HSP 1 Score: 51.6 bits (122), Expect = 7.350e-5
Identity = 38/119 (31.93%), Postives = 60/119 (50.42%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENVALYPSN 389
            A + E++ L   K+ R +  +T +R  ++ +WF  R      +H+C+VF   G SL + +   S             S+    V   AR +LE VAF+H + LIH D+KPEN+ L  S+
Sbjct:  141 AAMIEIDVLQ--KLSRHD--ITGSRCVQIRTWFDYR------NHICIVFERLGPSLYDFLRRNS-----------YRSFPIDLVREFARQILESVAFMHDLRLIHTDLKPENILLISSD 238          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: A0A0K9NIQ1_ZOSMR (Protein kinase superfamily protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NIQ1_ZOSMR)

HSP 1 Score: 51.6 bits (122), Expect = 7.370e-5
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENV 371
            A L E+E L   K+ + + G TH    ++  WF  R      +H+C+VF   G SL + + + +         P  L W+ G      R LLE VAF+H + LIH D+KPEN+
Sbjct:  136 AALIEIEVLQ--KLAKHDIGGTHC--VQIRHWFDYR------NHICIVFEKLGPSLYDFLRKNNYCSF-----PIDLVWELG------RQLLESVAFMHELCLIHTDLKPENI 227          
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Match: UPI001CFBB6AF (serine/threonine-protein kinase AFC2-like isoform X1 n=6 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFBB6AF)

HSP 1 Score: 51.6 bits (122), Expect = 7.370e-5
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = 3
Query:   33 ACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGGVDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGLLEGVAFLHLVGLIHADIKPENV 371
            A ++E++ L  LK K +++G    R  ++ SWF         +H+C+VF   G SL + +           +K    S+    V  + R LLE VAF+H + LIH D+KPEN+
Sbjct:  137 AAMTEIDVLQLLK-KNDKSG---RRCVQIRSWF------DYCNHICIVFEMLGPSLYDFL-----------LKNNYRSFPVDLVREIGRQLLECVAFMHELRLIHTDLKPENI 228          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1165.1051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LDN4_ECTSI1.030e-5774.82Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S3UQ19_HETAK1.990e-736.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0010359C571.590e-534.75serine/threonine-protein kinase AFC1-like isoform ... [more]
D7TQF1_VITVI5.390e-532.77Protein kinase domain-containing protein n=11 Tax=... [more]
A0A8B7BYM7_PHODC5.390e-531.36serine/threonine-protein kinase AFC1-like isoform ... [more]
B9IIV2_POPTR5.410e-532.20Protein kinase domain-containing protein n=15 Tax=... [more]
A0A438DWM9_VITVI5.440e-532.77Serine/threonine-protein kinase AFC1 n=1 Tax=Vitis... [more]
A0A833VES5_9POAL7.350e-531.93Serine/threonine-protein kinase AFC1 n=1 Tax=Carex... [more]
A0A0K9NIQ1_ZOSMR7.370e-534.51Protein kinase superfamily protein n=1 Tax=Zostera... [more]
UPI001CFBB6AF7.370e-532.74serine/threonine-protein kinase AFC2-like isoform ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1165contigS-dermatodea_contig1165:923..1610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue2e-47
Seed eggNOG ortholog2880.D8LDN4
KEGG koko:K08287
EggNOG free text desc.protein serine/threonine/tyrosine kinase activity
EggNOG OGsKOG0667@1,KOG0671@2759
EC2.7.12.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-19_001330.1
Exons2
Model size433
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1165.1051.1prot_S-dermatodea_contig1165.1051.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1165 928..1610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.3802423-UTR-S-dermatodea_contig1165:922..9271622924212.3802423-UTR-S-dermatodea_contig1165:922..927Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1165 923..927 +
1694079096.7508311-UTR-S-dermatodea_contig1165:922..9271694079096.7508311-UTR-S-dermatodea_contig1165:922..927Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1165 923..927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.391244-CDS-S-dermatodea_contig1165:927..12331622924212.391244-CDS-S-dermatodea_contig1165:927..1233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 928..1233 +
1694079096.7602346-CDS-S-dermatodea_contig1165:927..12331694079096.7602346-CDS-S-dermatodea_contig1165:927..1233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 928..1233 +
1622924212.4007275-CDS-S-dermatodea_contig1165:1490..16101622924212.4007275-CDS-S-dermatodea_contig1165:1490..1610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 1491..1610 +
1694079096.7676568-CDS-S-dermatodea_contig1165:1490..16101694079096.7676568-CDS-S-dermatodea_contig1165:1490..1610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 1491..1610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1165.1051.1

>prot_S-dermatodea_contig1165.1051.1 ID=prot_S-dermatodea_contig1165.1051.1|Name=mRNA_S-dermatodea_contig1165.1051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
MSGGESGMGACLSEVETLAFLKVKREEAGLTHARFAELASWFYRRSAIGG
VDHVCLVFRGGGLSLREAMAERSPSLTAGAMKPPLLSWDTGEVVAVARGL
LEGVAFLHLVGLIHADIKPENVALYPSNPDASVPVPTATTTP
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mRNA from alignment at S-dermatodea_contig1165:923..1610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1165.1051.1 ID=mRNA_S-dermatodea_contig1165.1051.1|Name=mRNA_S-dermatodea_contig1165.1051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=688bp|location=Sequence derived from alignment at S-dermatodea_contig1165:923..1610+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTAATGTCCGGGGGCGAATCTGGCATGGGAGCATGCCTCAGCGAGGTG GAAACCCTGGCGTTCCTCAAGGTTAAGCGAGAAGAGGCAGGCTTAACCCA CGCGCGGTTCGCGGAGCTCGCCTCCTGGTTCTACCGGCGCTCGGCCATCG GTGGAGTGGATCACGTTTGTCTCGTTTTCCGCGGGGGGGGCTTGTCCCTC AGGGAAGCAATGGCTGAAAGGTCGCCCTCACTGACGGCGGGGGCGATGAA ACCTCCGCTGTTGTCATGGGACACGGGAGAGGTGGTGGCTGTTGCTCGCG GGCTGCTCGAGGTGGGTGGTCCAGCGCATGTACAGTACACATCTTGGGTT CATTATGATATGTTTCTGTCGTAGGCAGTTGGTGTTGCTGCGGTACTCTC TCATGAGGATCGTCCTGCTCTTATAACACGTGTATTGTTTTTTTACAGTT GTTGATTTTTTTACTCCCGTTACCATCACCGCCACCTCATCCTTTCTCAC GTCTAGACTCTTATCTCTGCCTTCCCCCCCCTTCCCCCCTCCCCCCCCCC GCCCGCTCCCATCCCTAGGGCGTCGCTTTCTTGCACTTGGTCGGTCTCAT TCACGCGGACATCAAGCCCGAGAACGTGGCGCTCTACCCTTCTAATCCCG ACGCATCCGTGCCCGTGCCCACGGCGACAACAACTCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1165:923..1610+

>mRNA_S-dermatodea_contig1165.1051.1 ID=mRNA_S-dermatodea_contig1165.1051.1|Name=mRNA_S-dermatodea_contig1165.1051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig1165:923..1610+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCGGGGGCGAATCTGGCATGGGAGCATGCCTCAGCGAGGTGGAAAC
CCTGGCGTTCCTCAAGGTTAAGCGAGAAGAGGCAGGCTTAACCCACGCGC
GGTTCGCGGAGCTCGCCTCCTGGTTCTACCGGCGCTCGGCCATCGGTGGA
GTGGATCACGTTTGTCTCGTTTTCCGCGGGGGGGGCTTGTCCCTCAGGGA
AGCAATGGCTGAAAGGTCGCCCTCACTGACGGCGGGGGCGATGAAACCTC
CGCTGTTGTCATGGGACACGGGAGAGGTGGTGGCTGTTGCTCGCGGGCTG
CTCGAGATGTCCGGGGGCGAATCTGGCATGGGAGCATGCCTCAGCGAGGT
GGAAACCCTGGCGTTCCTCAAGGTTAAGCGAGAAGAGGCAGGCTTAACCC
ACGCGCGGTTCGCGGAGCTCGCCTCCTGGTTCTACCGGCGCTCGGCCATC
GGTGGAGTGGATCACGTTTGTCTCGTTTTCCGCGGGGGGGGCTTGTCCCT
CAGGGAAGCAATGGCTGAAAGGTCGCCCTCACTGACGGCGGGGGCGATGA
AACCTCCGCTGTTGTCATGGGACACGGGAGAGGTGGTGGCTGTTGCTCGC
GGGCTGCTCGAGGGCGTCGCTTTCTTGCACTTGGTCGGTCTCATTCACGC
GGACATCAAGCCCGAGAACGTGGCGCTCTACCCTTCTAATCCCGACGCAT
CCGTGCCCGTGCCCACGGCGACAACAACTCCCGGCGTCGCTTTCTTGCAC
TTGGTCGGTCTCATTCACGCGGACATCAAGCCCGAGAACGTGGCGCTCTA
CCCTTCTAATCCCGACGCATCCGTGCCCGTGCCCACGGCGACAACAACTC
CC
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