mRNA_S-dermatodea_contig11646.1047.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11646.1047.1
Unique NamemRNA_S-dermatodea_contig11646.1047.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A6H5JYW1_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW1_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.430e-50
Identity = 90/130 (69.23%), Postives = 108/130 (83.08%), Query Frame = 2
Query:    5 GGLGKVLLADFGSSFRVKEGSAEGGKGFTKA--YTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPDWDGLEPQASQLIRQMLARDPADRPSAREVLQNSWLR 388
            G +GKVLLADFGSSFR++     GG+G  K   YT AYSAPEVV NS  VDQKADVWSLGVIAYV+V GHHPFDP SEA DEEI ESI++SEPDW+G++ +A+ LIR+ML+R+P DRPSA+EVLQ+SWL+
Sbjct:  279 GSVGKVLLADFGSSFRLR-----GGRGHKKVKEYTIAYSAPEVVENSAEVDQKADVWSLGVIAYVLVVGHHPFDPTSEADDEEITESILHSEPDWEGVDLKAATLIRRMLSRNPEDRPSAQEVLQSSWLQ 403          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A835Z8F3_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.700e-26
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 2
Query:   17 KVLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPDWDG-----LEPQASQLIRQMLARDPADRPSAREVLQNSW 382
            +V+LADFGS+F     +       ++ YTAAYSAPEV+  S A+D+KAD+WS+GV+ YV++ G HPFD      DEE+   IV  EPD++      + P A  L+R+M+++D   RPSA+E L ++W
Sbjct:  260 EVMLADFGSAFSKNHVTG------SRDYTAAYSAPEVLLRSCAIDEKADIWSMGVLMYVLLSGRHPFDTHLHQDDEEVERRIVGKEPDYNAHAMRHVGPVAKDLLRRMMSKDRRQRPSAKEALSHAW 380          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A835ZES4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.000e-25
Identity = 59/133 (44.36%), Postives = 89/133 (66.92%), Query Frame = 2
Query:    5 GGLGKVLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPD-----WDGLEPQASQLIRQMLARDPADRPSAREVLQNSWLR 388
            GGL  V LADFGS+FR + G     K +T   TAAYS PEVVS + A  + ADV+SLGV+AY+++ G HPFDP+ +A++E+++  IV+ EPD     W  ++  A  L+R+ L++ P+ RP+A  +L + W++
Sbjct:  228 GGL-TVKLADFGSAFRTRAGVPRR-KDYTT--TAAYSPPEVVSGAAAATEAADVFSLGVVAYILLTGRHPFDPSGDASEEDVLARIVSDEPDFSDAAWGDVDAAARDLVRRALSKAPSARPTASAMLAHPWVQ 356          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A835ZCD7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.260e-23
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = 2
Query:    2 AGGLG-KVLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPD-----WDGLEPQASQLIRQMLARDPADRPSAREVLQNSWL 385
            +GG G  V L DFGS+FRV  G     K    +YTA YS PEVV+ +       DVW+LGV+AY+++ G HPFDP+ +  + E++  +V++EPD     WD ++  A  L++  L +DPA RP+A ++L + W+
Sbjct:  152 SGGSGLSVKLVDFGSAFRVGTGPP---KRKEWSYTAVYSPPEVVAGTAEASAAGDVWALGVVAYILLLGVHPFDPSGDTCEAEVLRRVVSAEPDYDDPAWDLIDAGAKDLVQGALNKDPALRPTAAQLLAHPWV 282          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: D7FVW8_ECTSI (Protein kinase domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.740e-22
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 2
Query:   17 KVLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVD-QKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPDWDGLE---PQASQLIRQMLARDPADRPSAREVLQNSWLR 388
            +V LADFGS+FR     +       + YTAAYSAPEV+S  +  D ++ D+W+LGV+ +V++ G HPF   S+ ++ E+   +   EPD   L    P+A  L+R++LARDP DRPSA ++L + WLR
Sbjct:  257 EVRLADFGSAFRQYRQISS-----ARDYTAAYSAPEVLSRQSVDDYRQVDMWALGVVMWVLLTGEHPFGAHSDLSEAELARRVAEMEPDLKALRHVSPEAKDLVRRLLARDPEDRPSALQLLSHPWLR 379          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A6H5KFB2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.020e-22
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 2
Query:   17 KVLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVD-QKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPDWDGLE---PQASQLIRQMLARDPADRPSAREVLQNSWLR 388
            +V LADFGS+FR     +       + YTAAYSAPEV+S  +  D ++ D+W+LGV+ +V++ G HPF   S+ ++ E+   +   EPD   L    P+A  L+R++LARDP DRPSA ++L + WLR
Sbjct:  392 EVRLADFGSAFRQYRQISS-----ARDYTAAYSAPEVLSRQSVDDYRQVDMWALGVVMWVLLTGEHPFGAHSDLSEAELARRVAEMEPDLKALRHVSPEAKDLVRRLLARDPEDRPSALQLLSHPWLR 514          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A397C960_9STRA (Protein kinase domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C960_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.820e-19
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = 2
Query:   17 KVLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPD------WDGLEPQASQLIRQMLARDPADRPSAREVLQNSWLR 388
            +++L DFG SFR  EG      G   + T AY+APEV++ S  V    D+W+LGV+ +V++ G+HPFD ASE +D  +  +I+  + D      W  +   A  LIR+++  DPA R +A +VL + WL+
Sbjct:  192 RMILIDFGLSFRASEGGCHSWDG---SGTVAYAAPEVLNQSANVTSAIDMWALGVVLFVVLAGYHPFDVASELSDAAVRLAILQGDFDFNHAASWAHISDDAKDLIRRLIVVDPAARLTAEQVLAHPWLK 318          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A7S2XVS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVS7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.600e-18
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 2
Query:   20 VLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSE-----PDWDGLEPQASQLIRQMLARDPADRPSAREVLQNSWLR 388
            + LADFGS+F + +   +         T AYSAPEV+      D + D+WSLGV+ ++++ G HPFDP   ATDE++ E ++  E      DW    PQA  L++++L  D   RP+A EVL++ W +
Sbjct:  238 IRLADFGSAFFLSD--LDDSPKNAPTGTVAYSAPEVLRGKVH-DARCDLWSLGVLLFIILTGVHPFDPDHTATDEKVKERVLKGELHFDEEDWREFSPQAKDLVKRLLTFDVDKRPTAEEVLEHPWFQ 362          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A3M6VSE3_9STRA (Protein kinase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSE3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.210e-17
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   20 VLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMESIVNSEPD-----WDGLEPQASQLIRQMLARDPADRPSAREVLQNSWL 385
            + L DFG SF++     E G     A T AY+ PE + N        DVWSLGV+ Y+++ G HPFDP+ +ATDEEI E I+    D     W  +   A  L+RQML  DP  R SA +VL++ W+
Sbjct:  222 LRLIDFGQSFQLDH---ENGHKMN-ACTTAYAPPEFI-NHRETGCAMDVWSLGVVLYIVLCGLHPFDPSDDATDEEIQERILRGNFDQESIGWLCMSDSARNLVRQMLTVDPEKRISAAQVLEHKWI 343          
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Match: A0A7S1BN47_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN47_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.810e-16
Identity = 44/127 (34.65%), Postives = 77/127 (60.63%), Query Frame = 2
Query:   11 LGKVLLADFGSSFRVKEGSAEGGKGFTKAYTAAYSAPEVVSNSTAVDQKADVWSLGVIAYVMVKGHHPFDPASEATDEEIMES--IVNSEPDWDGLEPQASQLIRQMLARDPADRPSAREVLQNSWL 385
            LG+V ++DFG + R+++     G+  T   T  Y APE++S + A D   DVWS G+I ++M+ G+HPF   ++A  E++++S  +    P W+ +   A  L+++M+   P  R +A+E L++SWL
Sbjct:  153 LGRVKISDFGMAKRIEKS----GRLNTYCGTLIYMAPEILSGA-AYDSSIDVWSAGIIIFIMLSGYHPFHGKNDAECEKMIQSGRLYFHPPSWEDISSNAITLVKEMICPCPLQRSTAKEALKSSWL 274          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11646.1047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYW1_9PHAE1.430e-5069.23Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835Z8F3_9STRA7.700e-2644.09Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZES4_9STRA6.000e-2544.36Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZCD7_9STRA1.260e-2341.04Kinase-like domain-containing protein (Fragment) n... [more]
D7FVW8_ECTSI1.740e-2242.97Protein kinase domain containing protein n=1 Tax=E... [more]
A0A6H5KFB2_9PHAE3.020e-2242.97Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A397C960_9STRA1.820e-1938.46Protein kinase domain-containing protein n=7 Tax=A... [more]
A0A7S2XVS7_9STRA5.600e-1838.28Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3M6VSE3_9STRA4.210e-1741.73Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7S1BN47_9STRA4.810e-1634.65Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11646contigS-dermatodea_contig11646:2336..3231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog2880.D8LF86
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size467
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11646.1047.1prot_S-dermatodea_contig11646.1047.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11646 2388..3038 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.12919-UTR-S-dermatodea_contig11646:2335..23871622924212.12919-UTR-S-dermatodea_contig11646:2335..2387Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11646 2336..2387 -
1694079096.5680761-UTR-S-dermatodea_contig11646:2335..23871694079096.5680761-UTR-S-dermatodea_contig11646:2335..2387Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11646 2336..2387 -
1622924212.1628928-UTR-S-dermatodea_contig11646:3038..32311622924212.1628928-UTR-S-dermatodea_contig11646:3038..3231Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11646 3039..3231 -
1694079096.6133888-UTR-S-dermatodea_contig11646:3038..32311694079096.6133888-UTR-S-dermatodea_contig11646:3038..3231Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11646 3039..3231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.138052-CDS-S-dermatodea_contig11646:2387..26061622924212.138052-CDS-S-dermatodea_contig11646:2387..2606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 2388..2606 -
1694079096.5891197-CDS-S-dermatodea_contig11646:2387..26061694079096.5891197-CDS-S-dermatodea_contig11646:2387..2606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 2388..2606 -
1622924212.1519225-CDS-S-dermatodea_contig11646:3035..30381622924212.1519225-CDS-S-dermatodea_contig11646:3035..3038Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 3036..3038 -
1694079096.6027246-CDS-S-dermatodea_contig11646:3035..30381694079096.6027246-CDS-S-dermatodea_contig11646:3035..3038Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 3036..3038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11646.1047.1

>prot_S-dermatodea_contig11646.1047.1 ID=prot_S-dermatodea_contig11646.1047.1|Name=mRNA_S-dermatodea_contig11646.1047.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=74bp
MVKGHHPFDPASEATDEEIMESIVNSEPDWDGLEPQASQLIRQMLARDPA
DRPSAREVLQNSWLRLPNLKQKL*
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mRNA from alignment at S-dermatodea_contig11646:2336..3231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11646.1047.1 ID=mRNA_S-dermatodea_contig11646.1047.1|Name=mRNA_S-dermatodea_contig11646.1047.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=896bp|location=Sequence derived from alignment at S-dermatodea_contig11646:2336..3231- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAGGGGGCTTGGGGAAGGTCCTCCTGGCGGATTTCGGGTCCAGCTTTC GGGTTAAGGAGGGCTCCGCGGAAGGCGGGAAGGGGTTTACCAAGGCGTAC ACCGCGGCGTACTCGGCGCCCGAGGTGGTGTCGAACAGCACCGCCGTGGA CCAGAAGGCGGACGTGTGGTCGCTGGGGGTGATCGCGTACGTCATGGTGA GAACGATCTCGATGGGTGTGCCTCTATTTTGATTTAGTTGATGGAGGGGT CGGTTTGGTTTCGAATGGTCGTGAATCGGTGGGGGTGTTTTGACTTCTTG GAGACGGCCTTGAGACGACTGAGCCACGCAGTCGCCGCGAGGTGTTCGCT ACAAGTATGCTTTCTCTGAGGTAGGGCGATGGGGGCGCTCCGCTCTGTGC GTCCGTGAGTTGCCTGTGCCATGCTTGACTGCAAGTGACTGGCATGGTCT CCATTGTGTACACAGTGTATCGTATGATGCACCCGTTCTCCCTCTCTTAC TGTATGTAGCCTCTGTTTGGTGAGGTTAGGCACCCAAACCGTTACGCAAG AGTATTCTGACGCCCCCCACCCCCGCCTGTTCTCGTCGCAACCGCGTGCA TCTCACTACCGGAAACGCCCAACAGGTCAAGGGCCACCACCCGTTTGATC CTGCCAGCGAGGCCACCGACGAAGAAATCATGGAGAGCATCGTGAACTCG GAGCCAGACTGGGACGGACTAGAGCCTCAGGCGTCTCAGCTCATCCGGCA GATGCTCGCGAGGGACCCCGCGGACAGGCCTTCCGCTCGTGAGGTCTTGC AGAACTCGTGGCTGCGGTTGCCAAACCTCAAGCAGAAATTATGATGACGT CTAAAGGGGGGTTTTAGCGTTGGCATCATTAGCGCGGGGCTGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11646:2336..3231-

>mRNA_S-dermatodea_contig11646.1047.1 ID=mRNA_S-dermatodea_contig11646.1047.1|Name=mRNA_S-dermatodea_contig11646.1047.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig11646:2336..3231- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGTCAAGGGCCACCACCCGTTTGATCCTGCCAGCGAGGCCACCGA
CGAAGAAATCATGGAGAGCATCGTGAACTCGGAGCCAGACTGGGACGGAC
TAGAGCCTCAGGCGTCTCAGCTCATCCGGCAGATGCTCGCGAGGGACCCC
GCGGACAGGCCTTCCGCTCGTGAGGTCTTGCAGAACTCGTGGCTGCGGTT
GCCAAACCTCAAGCAGAAATTATGAGTCAAGGGCCACCACCCGTTTGATC
CTGCCAGCGAGGCCACCGACGAAGAAATCATGGAGAGCATCGTGAACTCG
GAGCCAGACTGGGACGGACTAGAGCCTCAGGCGTCTCAGCTCATCCGGCA
GATGCTCGCGAGGGACCCCGCGGACAGGCCTTCCGCTCGTGAGGTCTTGC
AGAACTCGTGGCTGCGGTTGCCAAACCTCAAGCAGAAATTATGA
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