mRNA_S-dermatodea_contig11615.1030.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.300e-28 Identity = 71/146 (48.63%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 1 MRALGGEEDSAAASSASRPPLLITIGPQCAGKTTLLRKIAGGAGLAV-----------------------------GVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFA 351
M A+ G E ++ASRP LL+TIGPQCAGKT+LLR +A + A V D+ IDDHPSVY KIPT LL+ GCA G D ++ R+LSDRLG+PGCVETRLVA R+ G ISA EFA
Sbjct: 271 MGAVAGPE-----AAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFA 411
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI) HSP 1 Score: 102 bits (254), Expect = 5.820e-23 Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 1 MRALGGEEDSAAASSASRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFA 351
M A+ G E ++ +RP LL+TIGPQCAGKT+LLR +A + VY KIPT LL+ GCA GS D ++ R LSDRLG+PGCVETRLV R+ G ISA EFA
Sbjct: 1 MGAVAGAE-----AATNRPALLVTIGPQCAGKTSLLRALAAKS---------------EVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFA 97
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 5.080e-18 Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 49 SRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEF 348
S PLLITIGPQCAGKTT LRK+ GV D+AID+HP VY+++PT ++D + + D ++ GR LSDRL G LVA R+ G +S+A+F
Sbjct: 67 SEHPLLITIGPQCAGKTTTLRKM--------GVFDVAIDEHPDVYYELPTAYILDPTSTTLE-DVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKF 157
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.320e-14 Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 58 PLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFAD 354
PLLITIGPQCAGKTT L + G A + D+AIDDHP VY+K+PT +D + Q D + + +S+R+ + V LVA R+ G ++A EF +
Sbjct: 93 PLLITIGPQCAGKTTTLLALGQSLGGA-RICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFRE 190
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: B8C738_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C738_THAPS) HSP 1 Score: 75.5 bits (184), Expect = 2.150e-13 Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query: 40 SSASRPPLLITIGPQCAGKTTLLRKIAGGA--------GLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQ----GDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFAD 354
S+ S+ P+ IT+GPQC GKTT+L+++ G G + G +DI IDD VYF +P L + A S+ + S+ G+++ DR+ +P E +LV R+ G+++A +F +
Sbjct: 96 STQSKGPIYITVGPQCCGKTTILKRLFGTVFHNNEEEGGASTGGLDITIDDQELVYFPVPIQLFLPDAALPSEQRSTSNQSILGKSVRDRVVDPSNNELKLVIQRLAGKLTAGDFIE 212
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A7S2IEC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEC1_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.400e-10 Identity = 43/105 (40.95%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 55 PPLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGS---QGDP----SVSGRALSDRLGEPGCVETRLVALRVGGRISAAEF 348
PP+ ITIGPQCAGKTTLL + + DI IDD VY KIPT + S + DP + G++LS R+ + E RLV R+ I A EF
Sbjct: 107 PPIYITIGPQCAGKTTLLSTLPN-------LTDITIDDQEGVYIKIPTSYFLTNSPPPSPKQEPDPFLQQKILGKSLSHRIYDESNTEMRLVLQRLHNVIDATEF 204
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.880e-9 Identity = 40/95 (42.11%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 52 RPP-LLITIGPQCAGKTTLLRKI-AGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQG-------DPSVSGRALSDRLGEPGCVETRLV 309
RPP LLIT+GPQCAGKTTLL+ + A +VD+AIDD +Y +P L ++G D + GR LS R + VE+RLV
Sbjct: 85 RPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLV 179
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A7S4QIZ3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QIZ3_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 6.360e-7 Identity = 42/114 (36.84%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 49 SRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVV-DIAIDDHPSVYFKIPTGLLVDG-------CAAGSQGDP----SVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFAD 354
++ P+ ITIGPQCAGKTTLL K+A + + DI IDD VY KIPT + A +Q + + G++LS R+ E R V R+ I+A +F D
Sbjct: 149 AKAPIYITIGPQCAGKTTLLSKLASNSSHNNNKLKDITIDDQEGVYIKIPTFYFLSNRPPDTAPSADSNQINQFLAEKILGKSLSQRIYHFHNDEMRFVLQRLHNVITAQQFHD 262 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11615.1030.1 >prot_S-dermatodea_contig11615.1030.1 ID=prot_S-dermatodea_contig11615.1030.1|Name=mRNA_S-dermatodea_contig11615.1030.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp MRALGGEEDSAAASSASRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVVback to top mRNA from alignment at S-dermatodea_contig11615:3911..4924+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11615.1030.1 ID=mRNA_S-dermatodea_contig11615.1030.1|Name=mRNA_S-dermatodea_contig11615.1030.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1014bp|location=Sequence derived from alignment at S-dermatodea_contig11615:3911..4924+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11615:3911..4924+ >mRNA_S-dermatodea_contig11615.1030.1 ID=mRNA_S-dermatodea_contig11615.1030.1|Name=mRNA_S-dermatodea_contig11615.1030.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig11615:3911..4924+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |