mRNA_S-dermatodea_contig11615.1030.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11615.1030.1
Unique NamemRNA_S-dermatodea_contig11615.1030.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.300e-28
Identity = 71/146 (48.63%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    1 MRALGGEEDSAAASSASRPPLLITIGPQCAGKTTLLRKIAGGAGLAV-----------------------------GVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFA 351
            M A+ G E     ++ASRP LL+TIGPQCAGKT+LLR +A  +  A                               V D+ IDDHPSVY KIPT LL+ GCA G   D  ++ R+LSDRLG+PGCVETRLVA R+ G ISA EFA
Sbjct:  271 MGAVAGPE-----AAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFA 411          
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.820e-23
Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 MRALGGEEDSAAASSASRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFA 351
            M A+ G E     ++ +RP LL+TIGPQCAGKT+LLR +A  +                VY KIPT LL+ GCA GS  D  ++ R LSDRLG+PGCVETRLV  R+ G ISA EFA
Sbjct:    1 MGAVAGAE-----AATNRPALLVTIGPQCAGKTSLLRALAAKS---------------EVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFA 97          
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.080e-18
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   49 SRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEF 348
            S  PLLITIGPQCAGKTT LRK+        GV D+AID+HP VY+++PT  ++D  +   + D ++ GR LSDRL   G     LVA R+ G +S+A+F
Sbjct:   67 SEHPLLITIGPQCAGKTTTLRKM--------GVFDVAIDEHPDVYYELPTAYILDPTSTTLE-DVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKF 157          
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.320e-14
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   58 PLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFAD 354
            PLLITIGPQCAGKTT L  +    G A  + D+AIDDHP VY+K+PT   +D  +   Q D  +  + +S+R+ +   V   LVA R+ G ++A EF +
Sbjct:   93 PLLITIGPQCAGKTTTLLALGQSLGGA-RICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFRE 190          
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: B8C738_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C738_THAPS)

HSP 1 Score: 75.5 bits (184), Expect = 2.150e-13
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   40 SSASRPPLLITIGPQCAGKTTLLRKIAGGA--------GLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQ----GDPSVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFAD 354
            S+ S+ P+ IT+GPQC GKTT+L+++ G          G + G +DI IDD   VYF +P  L +   A  S+     + S+ G+++ DR+ +P   E +LV  R+ G+++A +F +
Sbjct:   96 STQSKGPIYITVGPQCCGKTTILKRLFGTVFHNNEEEGGASTGGLDITIDDQELVYFPVPIQLFLPDAALPSEQRSTSNQSILGKSVRDRVVDPSNNELKLVIQRLAGKLTAGDFIE 212          
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A7S2IEC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEC1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.400e-10
Identity = 43/105 (40.95%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   55 PPLLITIGPQCAGKTTLLRKIAGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGS---QGDP----SVSGRALSDRLGEPGCVETRLVALRVGGRISAAEF 348
            PP+ ITIGPQCAGKTTLL  +         + DI IDD   VY KIPT   +      S   + DP     + G++LS R+ +    E RLV  R+   I A EF
Sbjct:  107 PPIYITIGPQCAGKTTLLSTLPN-------LTDITIDDQEGVYIKIPTSYFLTNSPPPSPKQEPDPFLQQKILGKSLSHRIYDESNTEMRLVLQRLHNVIDATEF 204          
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.880e-9
Identity = 40/95 (42.11%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   52 RPP-LLITIGPQCAGKTTLLRKI-AGGAGLAVGVVDIAIDDHPSVYFKIPTGLLVDGCAAGSQG-------DPSVSGRALSDRLGEPGCVETRLV 309
            RPP LLIT+GPQCAGKTTLL+ +       A  +VD+AIDD   +Y  +P  L ++G              D  + GR LS R  +   VE+RLV
Sbjct:   85 RPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLV 179          
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Match: A0A7S4QIZ3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QIZ3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.360e-7
Identity = 42/114 (36.84%), Postives = 58/114 (50.88%), Query Frame = 1
Query:   49 SRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVV-DIAIDDHPSVYFKIPTGLLVDG-------CAAGSQGDP----SVSGRALSDRLGEPGCVETRLVALRVGGRISAAEFAD 354
            ++ P+ ITIGPQCAGKTTLL K+A  +      + DI IDD   VY KIPT   +          A  +Q +      + G++LS R+      E R V  R+   I+A +F D
Sbjct:  149 AKAPIYITIGPQCAGKTTLLSKLASNSSHNNNKLKDITIDDQEGVYIKIPTFYFLSNRPPDTAPSADSNQINQFLAEKILGKSLSQRIYHFHNDEMRFVLQRLHNVITAQQFHD 262          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11615.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JPA7_9PHAE1.300e-2848.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAX8_ECTSI5.820e-2351.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YGB3_9STRA5.080e-1849.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5Q0_9STRA1.320e-1444.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8C738_THAPS2.150e-1335.04Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2IEC1_9STRA3.400e-1040.95Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
W7TBP9_9STRA2.880e-942.11Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S4QIZ3_9STRA6.360e-736.84Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11615contigS-dermatodea_contig11615:3911..4924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue9e-20
Seed eggNOG ortholog2880.D8LAX8
EggNOG OGs2DZXI@1,2S7DW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size379
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.8938165-CDS-S-dermatodea_contig11615:3910..40871622924210.8938165-CDS-S-dermatodea_contig11615:3910..4087Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11615 3911..4087 +
1694079095.6892262-CDS-S-dermatodea_contig11615:3910..40871694079095.6892262-CDS-S-dermatodea_contig11615:3910..4087Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11615 3911..4087 +
1622924210.9025524-CDS-S-dermatodea_contig11615:4723..49241622924210.9025524-CDS-S-dermatodea_contig11615:4723..4924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11615 4724..4924 +
1694079095.7090948-CDS-S-dermatodea_contig11615:4723..49241694079095.7090948-CDS-S-dermatodea_contig11615:4723..4924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11615 4724..4924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11615.1030.1prot_S-dermatodea_contig11615.1030.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11615 3911..4924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11615.1030.1

>prot_S-dermatodea_contig11615.1030.1 ID=prot_S-dermatodea_contig11615.1030.1|Name=mRNA_S-dermatodea_contig11615.1030.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
MRALGGEEDSAAASSASRPPLLITIGPQCAGKTTLLRKIAGGAGLAVGVV
DIAIDDHPSVYFKIPTGLLVDGCAAGSQGDPSVSGRALSDRLGEPGCVET
RLVALRVGGRISAAEFADGIRGYGGQ
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mRNA from alignment at S-dermatodea_contig11615:3911..4924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11615.1030.1 ID=mRNA_S-dermatodea_contig11615.1030.1|Name=mRNA_S-dermatodea_contig11615.1030.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1014bp|location=Sequence derived from alignment at S-dermatodea_contig11615:3911..4924+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGCGCTCGGTGGGGAAGAGGACTCCGCCGCCGCGTCGTCTGCGTC TCGGCCGCCGCTGCTGATTACGATCGGCCCGCAATGCGCCGGGAAAACGA CCCTGCTGCGAAAGATAGCGGGCGGTGCCGGTTTGGCTGTGGGGGTGGTT GACATCGCGATCGACGACCATCCCTCGGTGAGGGGGGAATGGTACATACC TTTGTGTATTTTTGTTTTTTATAAATAAGATACACAGACCGGTTGGAGAG GAGATAGAAGTCGTGTCGGGTCAGCTGCGGTCCTTTGTCGTCTGGATTTA TTGTTGATATCGAAACCCTGGTGGCGTGCACGCGCGTGCGGGGAGGGGGG GGGGGTATGTGCACCAAAGATACATTACCAGGATATATCGTTCAGGACAA AGACTCTTGTACATACCATTGTAGCATCATACATGGAATGGCACCATGGC ACCGAGCCTCCAAGGTGTGTTTAACAGCTTGGACCATCTTCCCGCTTGAA AAGGTGGGACCCCAACTCTAAATCCTGTATGTTTTTGAAATCAAGTGGTG TTTTTTAGGGGTGTATGTGCGTACGATAATTCTCTGTATCCCTGGGTCGC TGCTGCAACCATACCTGCTGCGTACTTGTATGAACGTATGCGGCACCTCG CCCGCCGCCGAGCGCGCGCTGTATCTTTCTTGGATCGGCTACATGTACAA GCATAATGCAACCTGAAGTAGTGCGCACTGCAGCCTTTCAACGTGAAGCA ACCGCGCCTTGGAGCGCCGACCCTGAGTCGACGTTTCGTCCTCTCTCTCT CCTTTCTTGTCAGGTGTATTTCAAGATCCCCACTGGACTCCTGGTGGACG GCTGCGCGGCGGGCAGTCAGGGGGACCCTTCTGTCTCAGGTCGAGCGTTG AGCGATCGGCTGGGCGAGCCGGGATGCGTGGAGACACGACTCGTGGCGCT TCGGGTGGGAGGGAGGATATCTGCAGCGGAGTTCGCGGATGGCATCCGGG GGTACGGAGGCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11615:3911..4924+

>mRNA_S-dermatodea_contig11615.1030.1 ID=mRNA_S-dermatodea_contig11615.1030.1|Name=mRNA_S-dermatodea_contig11615.1030.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig11615:3911..4924+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGCGCTCGGTGGGGAAGAGGACTCCGCCGCCGCGTCGTCTGCGTC
TCGGCCGCCGCTGCTGATTACGATCGGCCCGCAATGCGCCGGGAAAACGA
CCCTGCTGCGAAAGATAGCGGGCGGTGCCGGTTTGGCTGTGGGGGTGGTT
GACATCGCGATCGACGACCATCCCTCGATGCGTGCGCTCGGTGGGGAAGA
GGACTCCGCCGCCGCGTCGTCTGCGTCTCGGCCGCCGCTGCTGATTACGA
TCGGCCCGCAATGCGCCGGGAAAACGACCCTGCTGCGAAAGATAGCGGGC
GGTGCCGGTTTGGCTGTGGGGGTGGTTGACATCGCGATCGACGACCATCC
CTCGGTGTATTTCAAGATCCCCACTGGACTCCTGGTGGACGGCTGCGCGG
CGGGCAGTCAGGGGGACCCTTCTGTCTCAGGTCGAGCGTTGAGCGATCGG
CTGGGCGAGCCGGGATGCGTGGAGACACGACTCGTGGCGCTTCGGGTGGG
AGGGAGGATATCTGCAGCGGAGTTCGCGGATGGCATCCGGGGGTACGGAG
GCCAGGTGTATTTCAAGATCCCCACTGGACTCCTGGTGGACGGCTGCGCG
GCGGGCAGTCAGGGGGACCCTTCTGTCTCAGGTCGAGCGTTGAGCGATCG
GCTGGGCGAGCCGGGATGCGTGGAGACACGACTCGTGGCGCTTCGGGTGG
GAGGGAGGATATCTGCAGCGGAGTTCGCGGATGGCATCCGGGGGTACGGA
GGCCAG
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