mRNA_S-dermatodea_contig11614.1029.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11614.1029.1
Unique NamemRNA_S-dermatodea_contig11614.1029.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: D8LF39_ECTSI (Putative Translation Initiation Inhibitor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF39_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.330e-33
Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 SMIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            ++I   + A GDLDK+RLVKITGFV SAD FT QS VLNGASDL LEVFG EKGAHARSAVGVN+LPLGVCVEIEAI EV
Sbjct:  119 NLITTMKAAAGDLDKIRLVKITGFVRSADGFTGQSAVLNGASDLLLEVFGREKGAHARSAVGVNALPLGVCVEIEAIAEV 198          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A7S3M7I1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7I1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.740e-26
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   19 QGAVGDLDKLR-LVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            + AVGDLDK++ +VKITGFVNSA DFT+Q  VLNG SDL  E+FG E G HARSA+GVN LPLGV VEIEAI+EV
Sbjct:  111 KSAVGDLDKVKKIVKITGFVNSASDFTNQPAVLNGCSDLLGEIFGVEIGRHARSALGVNVLPLGVAVEIEAIIEV 185          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A812XST0_SYMMI (TCP17 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XST0_SYMMI)

HSP 1 Score: 100 bits (250), Expect = 1.160e-25
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 SMIIDNQGAVGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            ++I   + AVGDLDK+ R+VK+ GFV    DFT Q  V+NG SDL +EVFG EKG HARSAVG N+LPLGV VEIEAI+EV
Sbjct:   48 NLITTMKSAVGDLDKVKRIVKLVGFVQCEGDFTQQPAVVNGCSDLMVEVFGMEKGRHARSAVGTNALPLGVAVEIEAIIEV 128          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A7S3U393_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U393_9SPIT)

HSP 1 Score: 98.6 bits (244), Expect = 9.960e-25
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   19 QGAVGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEVGP 246
            +G VGDLD++ R+VKI GFVN ADDFT Q +V+NG S+L  ++FG E+GAHARSAVG NSLP  V VEIE I EV P
Sbjct:   51 KGHVGDLDRIVRIVKIVGFVNCADDFTQQPEVINGCSNLLGDIFGQERGAHARSAVGTNSLPRNVPVEIEMIAEVAP 127          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A254UMR1_9RHOB (YjgF_endoribonc domain-containing protein n=9 Tax=Thioclava TaxID=285107 RepID=A0A254UMR1_9RHOB)

HSP 1 Score: 99.0 bits (245), Expect = 1.210e-24
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 SMIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            ++I   + A+GDLDKLR+VK+ GFVNS  DFT Q +V+NG SDL +EVFG E G HARSAV   SLP+GV VEIEAI EV
Sbjct:   72 ALIAQAKAAIGDLDKLRVVKLVGFVNSTTDFTDQPKVINGCSDLMVEVFG-EAGRHARSAVSAASLPMGVAVEIEAIFEV 150          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: UPI001A8EDD9E (RidA family protein n=2 Tax=Roseibium limicola TaxID=2816037 RepID=UPI001A8EDD9E)

HSP 1 Score: 97.4 bits (241), Expect = 6.170e-24
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 SMIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            +++   + AVGDL K+RL+K+ GFVNS DDFT Q QV+NGASD  +EV G +KG HARSAV   SLP GV VEIEAI EV
Sbjct:   79 NLLAQAKAAVGDLAKVRLIKLVGFVNSTDDFTQQPQVINGASDFMVEVLG-DKGRHARSAVSAASLPFGVAVEIEAIFEV 157          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A1H1N076_9MICO (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=12 Tax=Brevibacterium TaxID=1696 RepID=A0A1H1N076_9MICO)

HSP 1 Score: 96.7 bits (239), Expect = 1.150e-23
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   22 GAVGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            G +GDLDK+ R+VK+TGFVNSADDFT Q  V+NG S+L+ E+FG ++G H RSAVGVN+LPLG  VE+E IVEV
Sbjct:   80 GVLGDLDKVVRVVKVTGFVNSADDFTQQPAVINGVSELYGEIFG-DRGQHTRSAVGVNTLPLGTPVEVEVIVEV 152          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A162YG94_9MICO (LysR family transcriptional regulator n=8 Tax=Bacteria TaxID=2 RepID=A0A162YG94_9MICO)

HSP 1 Score: 96.3 bits (238), Expect = 1.620e-23
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   28 VGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            +GDLDK+ R+VK+TGFVNS DDFT Q  V+NG S+L+ E+FG +KG HARSAVGVN+LPLG  VE+E +VEV
Sbjct:   82 IGDLDKVVRVVKVTGFVNSTDDFTQQPSVINGVSELYGEIFG-DKGQHARSAVGVNTLPLGTPVEVEVVVEV 152          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A536EQF5_9CHLR (RidA family protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536EQF5_9CHLR)

HSP 1 Score: 95.9 bits (237), Expect = 2.070e-23
Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query:   19 QGAVGDLDKLR-LVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
            + A+G LD++R +VK+TGFV+SA+ FT QS V+NGASDL ++VFGAE+G HAR+AVGV  LPLG  VE+EA++E+
Sbjct:   77 RAALGSLDRVRGVVKLTGFVSSAESFTDQSAVVNGASDLVVDVFGAERGTHARAAVGVAQLPLGAAVELEAVLEI 151          
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A835Z1E3_9STRA (Putative translation initiation inhibitor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.560e-23
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   28 VGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVE 237
            +GDLD++ R+VK+ GFVN  DDFT Q  V+NGASDLF+EVFG +KG HARSAVG N+LPLG+ VEIEA++E
Sbjct:  101 LGDLDRVTRIVKLVGFVNCTDDFTGQPGVINGASDLFVEVFG-KKGVHARSAVGTNALPLGIPVEIEAVIE 170          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF39_ECTSI1.330e-3378.75Putative Translation Initiation Inhibitor n=1 Tax=... [more]
A0A7S3M7I1_9STRA4.740e-2672.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812XST0_SYMMI1.160e-2564.20TCP17 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3U393_9SPIT9.960e-2564.94Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A254UMR1_9RHOB1.210e-2463.75YjgF_endoribonc domain-containing protein n=9 Tax=... [more]
UPI001A8EDD9E6.170e-2462.50RidA family protein n=2 Tax=Roseibium limicola Tax... [more]
A0A1H1N076_9MICO1.150e-2366.22Enamine deaminase RidA, house cleaning of reactive... [more]
A0A162YG94_9MICO1.620e-2366.67LysR family transcriptional regulator n=8 Tax=Bact... [more]
A0A536EQF5_9CHLR2.070e-2361.33RidA family protein n=2 Tax=Chloroflexi bacterium ... [more]
A0A835Z1E3_9STRA2.560e-2367.61Putative translation initiation inhibitor n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11614contigS-dermatodea_contig11614:7166..7414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog2880.D8LF39
EggNOG free text desc.YjgF/chorismate_mutase-like, putative endoribonuclease
EggNOG OGs2QS7E@2759,COG0251@1
Ec32 ortholog descriptionputative Translation Initiation Inhibitor
Ec32 orthologEc-06_001550.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.8578968-CDS-S-dermatodea_contig11614:7165..74111622924210.8578968-CDS-S-dermatodea_contig11614:7165..7411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11614 7166..7411 -
1694079095.6672437-CDS-S-dermatodea_contig11614:7165..74111694079095.6672437-CDS-S-dermatodea_contig11614:7165..7411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11614 7166..7411 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.8690665-UTR-S-dermatodea_contig11614:7411..74141622924210.8690665-UTR-S-dermatodea_contig11614:7411..7414Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11614 7412..7414 -
1694079095.6795402-UTR-S-dermatodea_contig11614:7411..74141694079095.6795402-UTR-S-dermatodea_contig11614:7411..7414Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11614 7412..7414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11614.1029.1prot_S-dermatodea_contig11614.1029.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11614 7166..7411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11614.1029.1

>prot_S-dermatodea_contig11614.1029.1 ID=prot_S-dermatodea_contig11614.1029.1|Name=mRNA_S-dermatodea_contig11614.1029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
MIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGA
EKGAHARSAVGVNSLPLGVCVEIEAIVEVGP*
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mRNA from alignment at S-dermatodea_contig11614:7166..7414-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11614.1029.1 ID=mRNA_S-dermatodea_contig11614.1029.1|Name=mRNA_S-dermatodea_contig11614.1029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at S-dermatodea_contig11614:7166..7414- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAATGATTATCGACAACCAAGGTGCGGTGGGGGACCTGGACAAGCTGCG ATTGGTCAAGATAACGGGGTTCGTTAACTCTGCGGACGACTTCACCAGCC AGTCGCAGGTGCTGAACGGCGCCAGCGACCTTTTCCTCGAGGTCTTTGGG GCAGAAAAGGGCGCACACGCCCGGTCAGCCGTCGGGGTTAACTCGCTGCC TCTCGGAGTTTGCGTGGAGATAGAGGCCATCGTAGAAGTTGGGCCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11614:7166..7414-

>mRNA_S-dermatodea_contig11614.1029.1 ID=mRNA_S-dermatodea_contig11614.1029.1|Name=mRNA_S-dermatodea_contig11614.1029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig11614:7166..7414- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTATCGACAACCAAGGTGCGGTGGGGGACCTGGACAAGCTGCGATT
GGTCAAGATAACGGGGTTCGTTAACTCTGCGGACGACTTCACCAGCCAGT
CGCAGGTGCTGAACGGCGCCAGCGACCTTTTCCTCGAGGTCTTTGGGGCA
GAAAAGGGCGCACACGCCCGGTCAGCCGTCGGGGTTAACTCGCTGCCTCT
CGGAGTTTGCGTGGAGATAGAGGCCATCGTAGAAGTTGGGCCGTGAATGA
TTATCGACAACCAAGGTGCGGTGGGGGACCTGGACAAGCTGCGATTGGTC
AAGATAACGGGGTTCGTTAACTCTGCGGACGACTTCACCAGCCAGTCGCA
GGTGCTGAACGGCGCCAGCGACCTTTTCCTCGAGGTCTTTGGGGCAGAAA
AGGGCGCACACGCCCGGTCAGCCGTCGGGGTTAACTCGCTGCCTCTCGGA
GTTTGCGTGGAGATAGAGGCCATCGTAGAAGTTGGGCCGTGA
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