mRNA_S-dermatodea_contig11614.1029.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: D8LF39_ECTSI (Putative Translation Initiation Inhibitor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF39_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.330e-33 Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 1 SMIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
++I + A GDLDK+RLVKITGFV SAD FT QS VLNGASDL LEVFG EKGAHARSAVGVN+LPLGVCVEIEAI EV
Sbjct: 119 NLITTMKAAAGDLDKIRLVKITGFVRSADGFTGQSAVLNGASDLLLEVFGREKGAHARSAVGVNALPLGVCVEIEAIAEV 198
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A7S3M7I1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7I1_9STRA) HSP 1 Score: 103 bits (257), Expect = 4.740e-26 Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 19 QGAVGDLDKLR-LVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
+ AVGDLDK++ +VKITGFVNSA DFT+Q VLNG SDL E+FG E G HARSA+GVN LPLGV VEIEAI+EV
Sbjct: 111 KSAVGDLDKVKKIVKITGFVNSASDFTNQPAVLNGCSDLLGEIFGVEIGRHARSALGVNVLPLGVAVEIEAIIEV 185
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A812XST0_SYMMI (TCP17 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XST0_SYMMI) HSP 1 Score: 100 bits (250), Expect = 1.160e-25 Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1 SMIIDNQGAVGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
++I + AVGDLDK+ R+VK+ GFV DFT Q V+NG SDL +EVFG EKG HARSAVG N+LPLGV VEIEAI+EV
Sbjct: 48 NLITTMKSAVGDLDKVKRIVKLVGFVQCEGDFTQQPAVVNGCSDLMVEVFGMEKGRHARSAVGTNALPLGVAVEIEAIIEV 128
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A7S3U393_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U393_9SPIT) HSP 1 Score: 98.6 bits (244), Expect = 9.960e-25 Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 1
Query: 19 QGAVGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEVGP 246
+G VGDLD++ R+VKI GFVN ADDFT Q +V+NG S+L ++FG E+GAHARSAVG NSLP V VEIE I EV P
Sbjct: 51 KGHVGDLDRIVRIVKIVGFVNCADDFTQQPEVINGCSNLLGDIFGQERGAHARSAVGTNSLPRNVPVEIEMIAEVAP 127
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A254UMR1_9RHOB (YjgF_endoribonc domain-containing protein n=9 Tax=Thioclava TaxID=285107 RepID=A0A254UMR1_9RHOB) HSP 1 Score: 99.0 bits (245), Expect = 1.210e-24 Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 1 SMIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
++I + A+GDLDKLR+VK+ GFVNS DFT Q +V+NG SDL +EVFG E G HARSAV SLP+GV VEIEAI EV
Sbjct: 72 ALIAQAKAAIGDLDKLRVVKLVGFVNSTTDFTDQPKVINGCSDLMVEVFG-EAGRHARSAVSAASLPMGVAVEIEAIFEV 150
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: UPI001A8EDD9E (RidA family protein n=2 Tax=Roseibium limicola TaxID=2816037 RepID=UPI001A8EDD9E) HSP 1 Score: 97.4 bits (241), Expect = 6.170e-24 Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 1 SMIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
+++ + AVGDL K+RL+K+ GFVNS DDFT Q QV+NGASD +EV G +KG HARSAV SLP GV VEIEAI EV
Sbjct: 79 NLLAQAKAAVGDLAKVRLIKLVGFVNSTDDFTQQPQVINGASDFMVEVLG-DKGRHARSAVSAASLPFGVAVEIEAIFEV 157
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A1H1N076_9MICO (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=12 Tax=Brevibacterium TaxID=1696 RepID=A0A1H1N076_9MICO) HSP 1 Score: 96.7 bits (239), Expect = 1.150e-23 Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 22 GAVGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
G +GDLDK+ R+VK+TGFVNSADDFT Q V+NG S+L+ E+FG ++G H RSAVGVN+LPLG VE+E IVEV
Sbjct: 80 GVLGDLDKVVRVVKVTGFVNSADDFTQQPAVINGVSELYGEIFG-DRGQHTRSAVGVNTLPLGTPVEVEVIVEV 152
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A162YG94_9MICO (LysR family transcriptional regulator n=8 Tax=Bacteria TaxID=2 RepID=A0A162YG94_9MICO) HSP 1 Score: 96.3 bits (238), Expect = 1.620e-23 Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 28 VGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
+GDLDK+ R+VK+TGFVNS DDFT Q V+NG S+L+ E+FG +KG HARSAVGVN+LPLG VE+E +VEV
Sbjct: 82 IGDLDKVVRVVKVTGFVNSTDDFTQQPSVINGVSELYGEIFG-DKGQHARSAVGVNTLPLGTPVEVEVVVEV 152
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A536EQF5_9CHLR (RidA family protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536EQF5_9CHLR) HSP 1 Score: 95.9 bits (237), Expect = 2.070e-23 Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query: 19 QGAVGDLDKLR-LVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVEV 240
+ A+G LD++R +VK+TGFV+SA+ FT QS V+NGASDL ++VFGAE+G HAR+AVGV LPLG VE+EA++E+
Sbjct: 77 RAALGSLDRVRGVVKLTGFVSSAESFTDQSAVVNGASDLVVDVFGAERGTHARAAVGVAQLPLGAAVELEAVLEI 151
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Match: A0A835Z1E3_9STRA (Putative translation initiation inhibitor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E3_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.560e-23 Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 28 VGDLDKL-RLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAEKGAHARSAVGVNSLPLGVCVEIEAIVE 237
+GDLD++ R+VK+ GFVN DDFT Q V+NGASDLF+EVFG +KG HARSAVG N+LPLG+ VEIEA++E
Sbjct: 101 LGDLDRVTRIVKLVGFVNCTDDFTGQPGVINGASDLFVEVFG-KKGVHARSAVGTNALPLGIPVEIEAVIE 170 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11614.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11614.1029.1 >prot_S-dermatodea_contig11614.1029.1 ID=prot_S-dermatodea_contig11614.1029.1|Name=mRNA_S-dermatodea_contig11614.1029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp MIIDNQGAVGDLDKLRLVKITGFVNSADDFTSQSQVLNGASDLFLEVFGAback to top mRNA from alignment at S-dermatodea_contig11614:7166..7414- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11614.1029.1 ID=mRNA_S-dermatodea_contig11614.1029.1|Name=mRNA_S-dermatodea_contig11614.1029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at S-dermatodea_contig11614:7166..7414- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11614:7166..7414- >mRNA_S-dermatodea_contig11614.1029.1 ID=mRNA_S-dermatodea_contig11614.1029.1|Name=mRNA_S-dermatodea_contig11614.1029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig11614:7166..7414- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |