mRNA_S-dermatodea_contig11300.840.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: A0A6H5KNW1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW1_9PHAE) HSP 1 Score: 303 bits (777), Expect = 1.740e-100 Identity = 151/178 (84.83%), Postives = 163/178 (91.57%), Query Frame = 1
Query: 1 EIDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
EID DV+ EMDRV GGAD D VK++GLRKVYP S GAKVAV +TSLGIPRGECFGLLGINGAGKSSTLAILSGELP TTGSA+LSGFDV KNPEEIHRLVGYCPQFDALFETLTGREHLALYA+IKGI +KR AAV++KIEEMGL+QY DRPAGGYSGGNKRKLSVA+A+IGDPQI
Sbjct: 61 EIDADVRAEMDRVAGGGADNDVVKVKGLRKVYPTSGGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSAYLSGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYASIKGIPADKRSAAVDQKIEEMGLKQYADRPAGGYSGGNKRKLSVAMAMIGDPQI 238
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI) HSP 1 Score: 306 bits (783), Expect = 4.680e-93 Identity = 152/178 (85.39%), Postives = 164/178 (92.13%), Query Frame = 1
Query: 1 EIDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
EIDEDV+ EMDRV GGAD D VK++GLRKVYP S GAKVAV +TSLGIPRGECFGLLGINGAGKSSTLAILSGELP TTGSA+LSGFDV KNPEEIHRLVGYCPQFDALFETLTGREHLALYA+IKGI +KR AAV++KIEEMGL+QY DRPAGGYSGGNKRKLSVA+A+IGDPQI
Sbjct: 1523 EIDEDVRAEMDRVAGGGADNDVVKVKGLRKVYPASGGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSAYLSGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYASIKGIPADKRSAAVDQKIEEMGLKQYADRPAGGYSGGNKRKLSVAMAMIGDPQI 1700
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE) HSP 1 Score: 294 bits (752), Expect = 2.930e-90 Identity = 147/177 (83.05%), Postives = 158/177 (89.27%), Query Frame = 1
Query: 4 IDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
IDEDV+ EMDRV G AD D VK+ GLRKVYPVS+GAKVAV +TSLGIPRGECFGLLGINGAGKSSTLAILSGELP TTGSA L GFDV KNPEEIHRLVGYCPQFDALFETLTGREHLALYA IKGI +KR AAV +KIEEMGL +Y +RPAGGYSGGNKRKLSVA+A+IGDPQ+
Sbjct: 627 IDEDVRAEMDRVATGAADNDVVKVAGLRKVYPVSNGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSALLGGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYAAIKGIPADKRSAAVNQKIEEMGLTRYAERPAGGYSGGNKRKLSVAMAMIGDPQV 803
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI) HSP 1 Score: 293 bits (749), Expect = 1.750e-88 Identity = 147/177 (83.05%), Postives = 158/177 (89.27%), Query Frame = 1
Query: 4 IDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
ID+DV+ EMDRV G AD D VK+ GLRKVYPVS+GAKVAV +TSLGIPRGECFGLLGINGAGKSSTLAILSGELP TTGSA L GFDV KNPEEIHRLVGYCPQFDALFETLTGREHLALYA IKGI +KR AAV +KIEEMGL +Y +RPAGGYSGGNKRKLSVA+A+IGDPQI
Sbjct: 1544 IDKDVRAEMDRVAAGAADNDVVKVAGLRKVYPVSNGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSALLGGFDVGKNPEEIHRLVGYCPQFDALFETLTGREHLALYAAIKGIPADKRSAAVNQKIEEMGLTRYAERPAGGYSGGNKRKLSVAMAMIGDPQI 1720
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI) HSP 1 Score: 246 bits (627), Expect = 4.500e-72 Identity = 123/177 (69.49%), Postives = 141/177 (79.66%), Query Frame = 1
Query: 4 IDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
+DEDV E +RV GG D DAVKIEG+ KVYP +GAKVAV +TSLGIP+G+CFGLLGINGAGKSS L+ILSG +PAT G+A L G DV K PE IHRL+GYCPQFDALFETLTGREHL LYA IKGI + + A I ++GL QY D+ AG YSGGNKRKLSVA+A+IGDPQI
Sbjct: 1546 LDEDVARETERVRQGGGDGDAVKIEGVTKVYPTHAGAKVAVKSTSLGIPKGQCFGLLGINGAGKSSLLSILSGGIPATAGAASLGGHDVGKEPEAIHRLMGYCPQFDALFETLTGREHLRLYAAIKGIPAAEVEEAASTMITDLGLGQYADKLAGSYSGGNKRKLSVAVAMIGDPQI 1722
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.130e-70 Identity = 119/177 (67.23%), Postives = 136/177 (76.84%), Query Frame = 1
Query: 4 IDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
+DEDV E +RV GG D DAVKIEG+ KVYP +GAKVAV +TSLGIP+G+CFGLLGINGAGKSS L+ILSG +PAT G+A L G DV K PE IHRL+GYCPQFDALFETLTGREHL LYA IK A I ++GL Y D+ AG YSGGNKRKLSVA+A+IG+PQI
Sbjct: 127 LDEDVAREAERVRQGGGDGDAVKIEGVTKVYPTHAGAKVAVKSTSLGIPKGQCFGLLGINGAGKSSLLSILSGGIPATAGAASLGGHDVGKEPEAIHRLMGYCPQFDALFETLTGREHLRLYAAIK---------AASTMITDLGLGHYADKLAGSYSGGNKRKLSVAVAMIGNPQI 294
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: UPI001EB1D55A (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001EB1D55A) HSP 1 Score: 198 bits (504), Expect = 8.520e-60 Identity = 102/178 (57.30%), Postives = 128/178 (71.91%), Query Frame = 1
Query: 1 EIDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
EIDEDV+ E RV GGAD DAVK+ GLRKVYP G K+AV N S G+ RGECFG LGINGAGK++T+ +L+G++ + G+A L GFD+ E+ R +GYCPQFDALF+ LT REHL L+ IKG+ N D V EKI ++ L + ++ AG SGGNKRKLSVAIA+IG+P I
Sbjct: 2 EIDEDVEREAQRVACGGADEDAVKLMGLRKVYP---GGKIAVRNLSFGLKRGECFGFLGINGAGKTTTMKMLTGDVHPSHGTATLGGFDILSQQIEVRRQIGYCPQFDALFDLLTVREHLELFGAIKGVPQNLLDRVVTEKIHQLNLTDFENKLAGSLSGGNKRKLSVAIAMIGNPAI 176
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: A0A2P4YAL6_9STRA (ABC transporter lipid exporter ABCA1 family (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAL6_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.960e-58 Identity = 102/178 (57.30%), Postives = 131/178 (73.60%), Query Frame = 1
Query: 1 EIDEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
+IDEDVK E DRV GGAD DAVK+ GLRKVYP G KVAV + S G+ RGECFG LGINGAGK++T+ +L+G++P ++G+A L GF++ E+ R +GYCPQFDALF+ LT REHL L+ IKG+ + D V EKI+++ L + + AG SGGNKRKLSVAIA+IG+P I
Sbjct: 150 DIDEDVKKEADRVASGGADGDAVKLMGLRKVYP---GGKVAVRDLSFGLQRGECFGFLGINGAGKTTTMKMLTGDVPPSSGTATLGGFNILTEQIEVRRQIGYCPQFDALFDLLTVREHLELFGAIKGVPQSSLDRVVMEKIQQLNLSDFEHKLAGSLSGGNKRKLSVAIAMIGNPAI 324
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK) HSP 1 Score: 206 bits (523), Expect = 4.370e-58 Identity = 103/181 (56.91%), Postives = 132/181 (72.93%), Query Frame = 1
Query: 1 EIDEDVKTEMDRVMHGGADRDAVKIEGLRKVYP---VSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNKRDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
E+D DV E DRV+ GGA+ D ++I +RK +P G K AV SLGIPRG+CFGLLGINGAGK++TL ILSGE P T G+A L+G ++++NPEE HRL+GYCPQFDA+F +LTGRE+L LY +KGI +E+ I+ M L +Y DR +G YSGGNKRKLSV IA+IG P++
Sbjct: 1532 EVDADVAEEEDRVLGGGAEGDVIRIHRIRKAFPDGPCGRGYKEAVRGLSLGIPRGQCFGLLGINGAGKTTTLTILSGEQPPTEGAAFLAGLNIAENPEEAHRLIGYCPQFDAIFGSLTGRENLWLYGRLKGIPKKYLGELIEQTIQMMSLTEYADRLSGTYSGGNKRKLSVGIAMIGGPEL 1712
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Match: A0A7R9U9S9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9S9_9STRA) HSP 1 Score: 205 bits (521), Expect = 5.370e-58 Identity = 105/177 (59.32%), Postives = 128/177 (72.32%), Query Frame = 1
Query: 7 DEDVKTEMDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGINGAGKSSTLAILSGELPATTGSAHLSGFDVSKNPEEIHRLVGYCPQFDALFETLTGREHLALYATIKGIFVNK-RDAAVEEKIEEMGLRQYCDRPAGGYSGGNKRKLSVAIAIIGDPQI 534
DEDV E +RV+ GGAD D V + LRKV+P G KVAV S GIPRGECFG LGINGAGKS+TL+ILSGE P T+G+A+++GFD+ N +I R +GYCPQFDAL E LT REHL LYA IKG+ + V+ K+++M L + D+ AG SGGNKRKLSVAIA+IG P I
Sbjct: 576 DEDVAAEANRVLDGGADGDVVCLRQLRKVFPTPVGPKVAVRKLSFGIPRGECFGFLGINGAGKSTTLSILSGEFPPTSGTAYIAGFDIQHNQGKIRRRIGYCPQFDALLELLTVREHLELYARIKGVPEGDLMERVVQGKLKQMDLNAFADKAAGSLSGGNKRKLSVAIAMIGGPSI 752 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11300.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11300.840.1 >prot_S-dermatodea_contig11300.840.1 ID=prot_S-dermatodea_contig11300.840.1|Name=mRNA_S-dermatodea_contig11300.840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp MDRVMHGGADRDAVKIEGLRKVYPVSSGAKVAVTNTSLGIPRGECFGLLGback to top mRNA from alignment at S-dermatodea_contig11300:1196..2451+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11300.840.1 ID=mRNA_S-dermatodea_contig11300.840.1|Name=mRNA_S-dermatodea_contig11300.840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1256bp|location=Sequence derived from alignment at S-dermatodea_contig11300:1196..2451+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11300:1196..2451+ >mRNA_S-dermatodea_contig11300.840.1 ID=mRNA_S-dermatodea_contig11300.840.1|Name=mRNA_S-dermatodea_contig11300.840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig11300:1196..2451+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |