mRNA_S-dermatodea_contig11188.766.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11188.766.1
Unique NamemRNA_S-dermatodea_contig11188.766.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.320e-9
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   28 SCGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYVEELN 159
            SCGT VA LC + GCYDPG GDYDV IP D  PG+F L V+ ++
Sbjct:  267 SCGTLVAELCGEAGCYDPGPGDYDVRIPADTTPGTFKLQVKRVS 310
[Close]
BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 6.010e-9
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   28 SCGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYV 147
            SCGT VA LC + GCYDPG GDYDV IP D  PG+F L +
Sbjct:  175 SCGTLVAELCGEAGCYDPGPGDYDVRIPADTTPGTFKLQI 214
[Close]
BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.190e-6
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 1 
Query:   31 CGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYVEELNENGPWDCAAFDVSLTSSG--PSASPS 231
            CGTF  +     GCYDPGTGDYDV +P D   G + L V   ++     C A    +  +G  P+ SP+
Sbjct:  189 CGTFSTAXXXXXGCYDPGTGDYDVTVPADQAVGEYKLEVVSADDTDVSSCTASSFLVVEAGGAPAVSPT 257
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J745_9PHAE1.320e-961.36MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
D7G261_ECTSI6.010e-965.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G257_ECTSI1.190e-639.13Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11188contigS-dermatodea_contig11188:3476..4509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size350
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.789031-CDS-S-dermatodea_contig11188:3475..36121622924190.789031-CDS-S-dermatodea_contig11188:3475..3612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 3476..3612 -
1694079080.5670474-CDS-S-dermatodea_contig11188:3475..36121694079080.5670474-CDS-S-dermatodea_contig11188:3475..3612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 3476..3612 -
1622924190.8043861-CDS-S-dermatodea_contig11188:4298..45091622924190.8043861-CDS-S-dermatodea_contig11188:4298..4509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 4299..4509 -
1694079080.5809028-CDS-S-dermatodea_contig11188:4298..45091694079080.5809028-CDS-S-dermatodea_contig11188:4298..4509Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11188 4299..4509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11188.766.1prot_S-dermatodea_contig11188.766.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11188 3476..4509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11188.766.1

>prot_S-dermatodea_contig11188.766.1 ID=prot_S-dermatodea_contig11188.766.1|Name=mRNA_S-dermatodea_contig11188.766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
MVTVDENTPSCGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYVE
ELNENGPWDCAAFDVSLTSSGPSASPSTLAPAVFSPTISSATSAPATSAH
APGAPGSPGVPPIPVP
back to top

mRNA from alignment at S-dermatodea_contig11188:3476..4509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11188.766.1 ID=mRNA_S-dermatodea_contig11188.766.1|Name=mRNA_S-dermatodea_contig11188.766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1034bp|location=Sequence derived from alignment at S-dermatodea_contig11188:3476..4509- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAACGGTCGACGAAAATACTCCCAGCTGCGGGACATTTGTCGCGTC
TCTGTGCGATGACGATGGGTGCTACGACCCAGGGACGGGCGATTACGACG
TGGTCATTCCGGAGGATGTCGTGCCAGGGTCGTTCAGCTTGTACGTGGAA
GAGCTGAACGAGAACGGTCCCTGGGACTGCGCGGCGTTCGACGTGTCGTT
AACCTCTTCAGGTGATGGGATATTCGAAATGCCCCTTAGCTAAATGATGC
CGCTTGGTATTTTTTGTGTGGGTGGGGTGTTGTGTGTGTGTGTTGCGTGC
GTGCATTTCATTGCCATCTGATACGTCCGCCTTCTGCGGTGTATAACCGA
CCTCCATTCCCCCCCCGTTGCACACAGACGGAATGATTGCTCCCTCCCGT
ACATATTGTTTTAAAAGGACGCCGAATCATCCCACACTTACCTCCACCAG
TTTTGAAGCCGCCCGATTCCCTTCCCTCCCTGGCGGAGAGGTGCGCAAGC
GCATTCGGTCGATCCGACAAAACACAGAGGATACCGATTTTGCTTCACTG
GCATGGTTTACTGGGTCCCTTTTCCGGCACGTTCACACTCACCGCGGAGT
GTGGCGCAACGTAAGCATAAACATGTACAGTACCAATACCACGCACTTAA
GAACGCAGGCCGGCGTGTGTGTGCGTGTGTTTGCGTTTGCGACCTTTCAA
AGCCCACCCTGACCCCCCCCCGTAAAAAAACGCACGTACATATATATCAT
TGTCAGAATCAGAATCAGTCAAAGTACAGACGCGGGCGAGACGAAAGGCA
GTCCTCTCGTTGACCGCCCACTCCACCCCACCCTACACCCCACCCCAACC
GGTCCGCCGATCCGTCTCCTCGCACTCTTACCACCACCGCCATCCAGGTC
CGTCCGCCTCCCCATCAACGCTCGCACCTGCAGTATTTTCCCCGACAATA
TCGTCCGCGACATCTGCTCCGGCCACCTCCGCCCACGCCCCCGGGGCGCC
CGGGTCTCCCGGGGTGCCCCCGATCCCCGTTCCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11188:3476..4509-

>mRNA_S-dermatodea_contig11188.766.1 ID=mRNA_S-dermatodea_contig11188.766.1|Name=mRNA_S-dermatodea_contig11188.766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig11188:3476..4509- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAACGGTCGACGAAAATACTCCCAGCTGCGGGACATTTGTCGCGTC
TCTGTGCGATGACGATGGGTGCTACGACCCAGGGACGGGCGATTACGACG
TGGTCATTCCGGAGGATGTCGTGCCAGGGTCGTTCAGCTTGTACGTGGAA
GAGCTGAACGAGAACGGTCCCTGGGACTGCGCGGCGTTCGACGTGTCGTT
AACCTCTTCAGATGGTAACGGTCGACGAAAATACTCCCAGCTGCGGGACA
TTTGTCGCGTCTCTGTGCGATGACGATGGGTGCTACGACCCAGGGACGGG
CGATTACGACGTGGTCATTCCGGAGGATGTCGTGCCAGGGTCGTTCAGCT
TGTACGTGGAAGAGCTGAACGAGAACGGTCCCTGGGACTGCGCGGCGTTC
GACGTGTCGTTAACCTCTTCAGGTCCGTCCGCCTCCCCATCAACGCTCGC
ACCTGCAGTATTTTCCCCGACAATATCGTCCGCGACATCTGCTCCGGCCA
CCTCCGCCCACGCCCCCGGGGCGCCCGGGTCTCCCGGGGTGCCCCCGATC
CCCGTTCCGGTCCGTCCGCCTCCCCATCAACGCTCGCACCTGCAGTATTT
TCCCCGACAATATCGTCCGCGACATCTGCTCCGGCCACCTCCGCCCACGC
CCCCGGGGCGCCCGGGTCTCCCGGGGTGCCCCCGATCCCCGTTCCG
back to top