prot_S-dermatodea_contig11188.766.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11188.766.1
Unique Nameprot_S-dermatodea_contig11188.766.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length116
Homology
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BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.320e-9
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0 
Query:   10 SCGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYVEELN 53
            SCGT VA LC + GCYDPG GDYDV IP D  PG+F L V+ ++
Sbjct:  267 SCGTLVAELCGEAGCYDPGPGDYDVRIPADTTPGTFKLQVKRVS 310
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BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 6.010e-9
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0 
Query:   10 SCGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYV 49
            SCGT VA LC + GCYDPG GDYDV IP D  PG+F L +
Sbjct:  175 SCGTLVAELCGEAGCYDPGPGDYDVRIPADTTPGTFKLQI 214
[Close]
BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.190e-6
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 0 
Query:   11 CGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYVEELNENGPWDCAAFDVSLTSSG--PSASPS 77
            CGTF  +     GCYDPGTGDYDV +P D   G + L V   ++     C A    +  +G  P+ SP+
Sbjct:  189 CGTFSTAXXXXXGCYDPGTGDYDVTVPADQAVGEYKLEVVSADDTDVSSCTASSFLVVEAGGAPAVSPT 257
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11188.766.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J745_9PHAE1.320e-961.36MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
D7G261_ECTSI6.010e-965.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G257_ECTSI1.190e-639.13Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11188contigS-dermatodea_contig11188:3476..4509 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11188.766.1mRNA_S-dermatodea_contig11188.766.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11188 3476..4509 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11188.766.1 ID=prot_S-dermatodea_contig11188.766.1|Name=mRNA_S-dermatodea_contig11188.766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
MVTVDENTPSCGTFVASLCDDDGCYDPGTGDYDVVIPEDVVPGSFSLYVE
ELNENGPWDCAAFDVSLTSSGPSASPSTLAPAVFSPTISSATSAPATSAH
APGAPGSPGVPPIPVP
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