mRNA_S-dermatodea_contig11088.712.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11088.712.1
Unique NamemRNA_S-dermatodea_contig11088.712.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11088.712.1 vs. uniprot
Match: D7G271_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G271_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 6.710e-31
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:   49 MADVDMKDASASATAAAEAGEKQAQSPRAITVADIAKNAELFVKAVETTQTRITTRAISRNTPIRRRVQADVLCDALKQMLPDDCPNKAELLLLLAKLPSK 351
            M DVDMKDASA+ATAA E GE  A  P++I V DI +NAEL VK V+    R+TTRAISRNTPIRRRVQADVLC+AL ++LPDDCP+KAEL  LLAKLPS+
Sbjct:    1 MTDVDMKDASAAATAAGEKGEVAAV-PKSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCEALAKLLPDDCPDKAELTRLLAKLPSE 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11088.712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G271_ECTSI6.710e-3170.30PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11088contigS-dermatodea_contig11088:2413..4677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.6e-26
Seed eggNOG ortholog2880.D7G271
Preferred namePSMD3
KEGG koko:K03033,ko:K03126
KEGG Pathwayko03022,ko03050,ko05169,map03022,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0008541,GO:0009056,GO:0009057,GO:0009506,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046903,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.regulation of protein catabolic process
EggNOG OGsKOG2581@1,KOG2581@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03036,ko03051
Hectar predicted targeting categoryother localisation
Exons2
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.7519417-CDS-S-dermatodea_contig11088:2412..26391622924186.7519417-CDS-S-dermatodea_contig11088:2412..2639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11088 2413..2639 +
1694079077.6424894-CDS-S-dermatodea_contig11088:2412..26391694079077.6424894-CDS-S-dermatodea_contig11088:2412..2639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11088 2413..2639 +
1622924186.7653594-CDS-S-dermatodea_contig11088:4552..46761622924186.7653594-CDS-S-dermatodea_contig11088:4552..4676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11088 4553..4676 +
1694079077.6558235-CDS-S-dermatodea_contig11088:4552..46761694079077.6558235-CDS-S-dermatodea_contig11088:4552..4676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11088 4553..4676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11088.712.1prot_S-dermatodea_contig11088.712.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11088 2413..4676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11088.712.1

>prot_S-dermatodea_contig11088.712.1 ID=prot_S-dermatodea_contig11088.712.1|Name=mRNA_S-dermatodea_contig11088.712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
RETKASACVAISKARPMADVDMKDASASATAAAEAGEKQAQSPRAITVAD
IAKNAELFVKAVETTQTRITTRAISRNTPIRRRVQADVLCDALKQMLPDD
CPNKAELLLLLAKLPSK
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mRNA from alignment at S-dermatodea_contig11088:2413..4677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11088.712.1 ID=mRNA_S-dermatodea_contig11088.712.1|Name=mRNA_S-dermatodea_contig11088.712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2265bp|location=Sequence derived from alignment at S-dermatodea_contig11088:2413..4677+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGAGACCAAAGCATCCGCGTGCGTCGCTATCAGCAAAGCTCGCCCGAT
GGCCGACGTAGACATGAAGGATGCCTCGGCATCAGCCACGGCGGCGGCGG
AGGCAGGAGAGAAGCAGGCACAGTCTCCCAGGGCTATCACGGTGGCTGAC
ATCGCGAAAAACGCGGAGCTCTTCGTGAAGGCAGTCGAGACGACCCAGAC
TCGAATCACGACGCGCGCAATCAGCAGGTACTTGTACAACAGGAGTAGGT
TCCTTGTTTATGTCGAGGGGGGGAGGGTGTGCTTTTGGTAAATATATGTC
GTGCCCAGACGGGCGTAAGACCACGCGTCCCAACTGAGATCCTGACTACA
CAAATTATCAAGGCATTATTGCAATAACGGGTACTGCTGTAGACACCCAC
AAATGCAGGGTGTAATTTTTCGCGGTGGAGAGTATAGCCACCATTCGGGT
ACAGTATAATATTAATATTAATAGTAGACATCGTACAGGTACAGCAGTGT
CAAAACACATACTTGTATGCTTGGCAGAAAGCTCCGAAAGGCGGAGTCGC
TCGCGAAAGGCTGATTTATTTGACGGATGTATCGTCTGTTCCTTGGAGGG
CTGTTGGGCGCTCTGGGGTCAGTAGTCACAATCGGGAGCGGGGGAGGGCA
CCAATATTTCACCAAACACGTTGTATGATGCTCTGCTTTTTTGCCTTGTA
TCGATAAAGCTCTTGAACCTACAAAAGTAATTACATACCGGTATTATACA
GCGGTCGCAGCTAATCCCGGGAGCTCACCGGGAGGCCCTTCGTTCAGGGG
GAGTCGGTGGAGCAAGGTATACAAAATCGTGTTCGCACGCACACGCGCAC
GCCGCTTTAGCGCTAGTCTCCTTGCAAGTATACCAGTGTCGTAAATATGT
AAGAATAGATACTGTAAGGTGCCACTGGAGCCTCAAGTCAACACTGCATA
CTTATAGTGCATAGAGCAGTTGTAACGAAACCGGCTCGGCCGCTGGACGA
GCTCGATCCTGTAGGGTATCACTTATACATGTAACCGACTCGGCCTGATC
CATATGCCGTCGGTACTGTCGCAATCATAAGCATCCTATGATATATCTCC
CCAGTACAACTGTAGTACAAGCCATCGTTTTTTTGTTGGGCGTTGGGCCT
CATTCAGGGTTCATTCAGCGACAACGGTTCATGCCTTACACTGCACGGAT
ATCGAACTGTCCCGTGACAAGTGTGTGCGATCCTGTCCAACCCAGGCAGA
GAAGCACGCGAACCTACAACTACTCTGCACCACACGCCGGAGCGCGTGGA
CTATGCATGCACAGCAGCAGAAGCAGCAGCGGTGTAAGAGTCAGACAAAT
TCCCAGAGGATCGCTGCGTAAAGAAAACGCGTAACAATTAAGAGTATTTT
AATACAACAGTAGTACCGCTGTTTTTCGCCGTGAAAAATGCGGCACGTTC
ATGCGCGAAACGGGTGTAAACGGCAAATAGACACCTGTACATTTGTAATC
CCCCCCAGCACATATGACTTACTGAGAGAGTAAAGGACGTACCTACTTTC
AGTTTCCCCTGAACCAGTGTGCTTGTGAGTTAGGGATGTACATGGGAACT
AGATTTTGTTTTTTTATAAACCAAAGACGACTCTGATGAAACTCAACGTC
GGTGGTATTAATTCCTGGTACATCACAGACAGCAGTAGAGCTCTTATTAC
ACTGTCGCCATTCTGAACGATTTTTTCATTAACCAACGAGCAGCCCACCC
ATCATCCTATCATGCCCCGCGTTTCCCTCCCCGCCCTGCCCCGCCCCGCC
CCGTCCCGGTGCTGTTGGCGTGCGTGGTCCTTTTATCATATCTAAGTTTG
GGGAAGACGCCCGTTAAACATATGTTCCCCCCCCCCCCCCCCCCACCCTC
GGGAACGGTTGGCTATCGGCCTTGGGGGGAGAAATTCCCCGCCCTCCAGG
GGACGCGGGGTCAATGGCCGAACACCTAAGACACGCAAAACTTGCCCCCC
CCCCCCCCCCCCTCCTTGCTTGGTTGGGTGCGACATGCGTTAAACGTAAG
TACCCCCTCCCCCCCCCCACCCCCCCTCGCTGTCGCCCCCTCGCTTCACC
ATCTGACTGCTCTTGTACTCGTCGACGCCGTCGAGAGCAGGAATACCCCT
ATCCGACGCAGGGTGCAGGCGGACGTGCTATGCGACGCGCTGAAGCAGAT
GCTTCCGGACGACTGCCCCAACAAGGCGGAGCTGCTGCTGCTGCTTGCGA
AGCTGCCCAGCAAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11088:2413..4677+

>mRNA_S-dermatodea_contig11088.712.1 ID=mRNA_S-dermatodea_contig11088.712.1|Name=mRNA_S-dermatodea_contig11088.712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig11088:2413..4677+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGAGACCAAAGCATCCGCGTGCGTCGCTATCAGCAAAGCTCGCCCGAT
GGCCGACGTAGACATGAAGGATGCCTCGGCATCAGCCACGGCGGCGGCGG
AGGCAGGAGAGAAGCAGGCACAGTCTCCCAGGGCTATCACGGTGGCTGAC
ATCGCGAAAAACGCGGAGCTCTTCGTGAAGGCAGTCGAGACGACCCAGAC
TCGAATCACGACGCGCGCAATCAGCAGAGAGAGACCAAAGCATCCGCGTG
CGTCGCTATCAGCAAAGCTCGCCCGATGGCCGACGTAGACATGAAGGATG
CCTCGGCATCAGCCACGGCGGCGGCGGAGGCAGGAGAGAAGCAGGCACAG
TCTCCCAGGGCTATCACGGTGGCTGACATCGCGAAAAACGCGGAGCTCTT
CGTGAAGGCAGTCGAGACGACCCAGACTCGAATCACGACGCGCGCAATCA
GCAGGAATACCCCTATCCGACGCAGGGTGCAGGCGGACGTGCTATGCGAC
GCGCTGAAGCAGATGCTTCCGGACGACTGCCCCAACAAGGCGGAGCTGCT
GCTGCTGCTTGCGAAGCTGCCCAGCAAAGAATACCCCTATCCGACGCAGG
GTGCAGGCGGACGTGCTATGCGACGCGCTGAAGCAGATGCTTCCGGACGA
CTGCCCCAACAAGGCGGAGCTGCTGCTGCTGCTTGCGAAGCTGCCCAGCA
AA
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