mRNA_S-dermatodea_contig11085.710.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE) HSP 1 Score: 298 bits (763), Expect = 1.230e-98 Identity = 152/187 (81.28%), Postives = 163/187 (87.17%), Query Frame = 1
Query: 58 DRRFDERSNGSGPLGS----PTPYMSLPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMGH 606
+RR DE G GS P LPFF PW P+PAAGAA++MP PP L ESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQM+NGR+VPQAP RE ARLAYKQTA+RSLS+GRNFASFSAIFMGSECVIEKMRGK+DMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSA+MDK+MGH
Sbjct: 6 ERRHDECCKQQGTEGSRSLHPQLGSRLPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA) HSP 1 Score: 206 bits (523), Expect = 3.120e-62 Identity = 107/169 (63.31%), Postives = 123/169 (72.78%), Query Frame = 1
Query: 100 GSPTPYMSLPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMGH 606
G P LP K W + P PP+L ESCG +LIMGT GG GMG +FG+FLGAMGDMQP+Q++NGR+VPQAPL E AR AY T RSL + +NFASFSAIFM SECVIEKMRGK DMMNSVY GC TG AFG+K GP+ A GC+GMA FSAV+D +MGH
Sbjct: 34 GRPLLLKFLPTVKAWDMR---TGGTMPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.010e-44 Identity = 85/169 (50.30%), Postives = 109/169 (64.50%), Query Frame = 1
Query: 112 PYMS---LPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMGH 606
PY + LP+ PW P GA E P+ + ESCG K +G GGA MG + G+FLGAM DM P + ++NG++VPQAPL+E AR + T E+ + RNFA + +F GSEC++EK RGK D+ N V +GC TGAA KQGPQAA GC G A FS V+D +MGH
Sbjct: 53 PYFNTTRLPYLIPWMPT-FNGAQEPPPDFSFMTESCGIKSAIGLFGGAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A6U3RYY1_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RYY1_9STRA) HSP 1 Score: 155 bits (393), Expect = 6.280e-42 Identity = 81/162 (50.00%), Postives = 108/162 (66.67%), Query Frame = 1
Query: 121 SLPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMG 603
SLP+F+PW KP +G + P+ L ESCG K +G GG MG + G+FLGAM DM P + ++ G++VPQAPL+E R + TAE+S+ R FA + +F GSEC++EK RGK+D+ NSV +GC TGAA K GP +A FGC G A FS V+D +MG
Sbjct: 104 SLPYFQPW--KPTSGPEQLPPDFTFLSESCGGKAAIGVFGGGVMGLLMGVFLGAMSDMTPPVTVIGGKEVPQAPLKEQMRTTMRATAEKSMYWCRQFAFITGVFSGSECLVEKYRGKTDVWNSVLSGCVTGAAMQAKAGPSSAAFGCGGFAAFSLVIDSVMG 263
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A7S2AAN4_TRICV (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAN4_TRICV) HSP 1 Score: 152 bits (384), Expect = 1.150e-40 Identity = 80/165 (48.48%), Postives = 102/165 (61.82%), Query Frame = 1
Query: 121 SLPFFKPWFPKPAAGAAESMPNPPS--LQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMGH 606
SLP+ PW+P P A+ P P L ESCG K +G GGA G G+FLGAM DM P + ++NG++VPQAPL+E R + T E+ + RNFA + +F G+EC++EK RGK D+ NS GC TGAA KQGPQAA GC G A FS V+D + H
Sbjct: 96 SLPYLTPWYPIPGPNASAEGPPPDFSWLSESCGGKAAIGVFGGAVCGLFMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQMRTTVRATGEKCIYWSRNFAFITGVFGGTECLVEKYRGKHDVWNSALGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSVFPH 260
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO) HSP 1 Score: 152 bits (383), Expect = 1.740e-40 Identity = 83/163 (50.92%), Postives = 105/163 (64.42%), Query Frame = 1
Query: 121 SLPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMGH 606
SLP+ PW KP A E P+ L SC K+ +G +GGAGMG + GLFLGA+ D P +Q++ GR VPQAPLRE R+ + TAE+S NFA + +F GSEC++EK RGK+D+ NSV +GC TGAA K GPQ+A GC G A FS V+D M H
Sbjct: 103 SLPYPLPW--KPVASPTEPPPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA) HSP 1 Score: 151 bits (382), Expect = 3.110e-40 Identity = 82/163 (50.31%), Postives = 103/163 (63.19%), Query Frame = 1
Query: 121 SLPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMGH 606
SLP+F PW K + G E PN L + C K +G GG MG + G+FLGA+ D QP +Q+ G+ VPQAP +E AR + TAE+S+ RNFA + +F GSEC++EK RGK DM N V +GC TGAA GPQAA GC G A FS V+DKIMG+
Sbjct: 110 SLPYFMPW--KTSGGPTEIPPNYAWLMDGCAGKAAIGVFGGGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGN 270
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A7R9WDT6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDT6_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.190e-39 Identity = 85/178 (47.75%), Postives = 108/178 (60.67%), Query Frame = 1
Query: 79 SNGSGPLGSPTPYMSLPFFKPWFPKPAAGAAESMPNPPS----LQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKI 597
SN LG+ T S+P PW+P P G SM PP L ESCG K MG GGA G + G+FLGAM DM P + +++G++VPQAPL+E R + T E+ L RNFA + +F G+EC++EK RGK D+ N+ GC TGAA KQGPQAA GC G A FS V+D +
Sbjct: 72 SNPEFTLGTLT-RRSIPVLTPWYPVP--GPNSSMEGPPPDFSWLSESCGGKAAMGVFGGAVCGLLMGVFLGAMSDMTPPVTVIDGKEVPQAPLKEQVRTTLRATGEKCLYWSRNFAFITGVFGGTECLVEKYRGKHDVWNAAIGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSV 246
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: K0TBX0_THAOC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBX0_THAOC) HSP 1 Score: 149 bits (375), Expect = 1.680e-39 Identity = 81/161 (50.31%), Postives = 105/161 (65.22%), Query Frame = 1
Query: 124 LPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMG 603
LP+ +PW + A AE PN L ESCG K +G +GG MG V G+FLGA+ DM P + ++ G++VPQAPL+E R + TA++SL R FA + +F GSEC++EK RGK D+ NSV +GC TGAA KQGPQA+ GC G A FS V+D MG
Sbjct: 84 LPYPQPWA-RANASPAELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMG 243
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA) HSP 1 Score: 145 bits (366), Expect = 7.620e-39 Identity = 77/163 (47.24%), Postives = 98/163 (60.12%), Query Frame = 1
Query: 121 SLPFFKPWFPKPAAGAAESMPNPPSLQESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMVNGRQVPQAPLREHARLAYKQTAERSLSLGRNFASFSAIFMGSECVIEKMRGKSDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSAVMDKIMGH 606
S+P F P P P NP ESC + ++G+ G MG V G+FLGAMGD+ P + V G++ PQ PL E AR AY+ TAERS+ R+F + +A+F G+ECVIEK RG+ D N V +GCA GA GP AAC GC G A FSA + +MGH
Sbjct: 36 SVPIFTPATPHPGV-------NPGWAAESCVGRAVLGSFAGGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11085.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11085.710.1 >prot_S-dermatodea_contig11085.710.1 ID=prot_S-dermatodea_contig11085.710.1|Name=mRNA_S-dermatodea_contig11085.710.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=192bp MSDDNRPHDRRFDERSNGSGPLGSPTPYMSLPFFKPWFPKPAAGAAESMPback to top mRNA from alignment at S-dermatodea_contig11085:3234..6372+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11085.710.1 ID=mRNA_S-dermatodea_contig11085.710.1|Name=mRNA_S-dermatodea_contig11085.710.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3139bp|location=Sequence derived from alignment at S-dermatodea_contig11085:3234..6372+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11085:3234..6372+ >mRNA_S-dermatodea_contig11085.710.1 ID=mRNA_S-dermatodea_contig11085.710.1|Name=mRNA_S-dermatodea_contig11085.710.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at S-dermatodea_contig11085:3234..6372+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |