mRNA_S-dermatodea_contig10965.636.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10965.636.1
Unique NamemRNA_S-dermatodea_contig10965.636.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10965.636.1 vs. uniprot
Match: D7FI24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI24_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 9.620e-56
Identity = 145/376 (38.56%), Postives = 180/376 (47.87%), Query Frame = 1 
Query:    1 WESAPECGGKANAGRHGRDSRWRSRGAA-------------GRRPVSRDAFRQLHVSERLYHMAGVFARKRESARKRRDDLQKAREAQVTSGRLSLCSKTRELTDNLPRYTYGRRSDKVEVNAEGDRWKGGGGGY------------------------------QDAGDRLYSEWQAERER--------KSRRRDLEAAREAASPGAWSCPKCGSDNRAQDGTCQTVTGIAVPAQETRPDTWHHESSEQLGRAAAAKTAAGAG----------------------------------DDRNNRNNVKGRIGDDGLKRCARPRPPMFKPTPLARP-GQDTFRMRPKGELLFDDLYRNPPTPSRRRTKRILDAETKA 870
            W SAPE G   + G   R +R    G A             GRRP SR+A RQL VSER++ +    A+++                   SGRL+LCSKTRELTDN P+Y Y R + +   +                                           + AGDRLYSEW A R+R        K+      A+RE ASP  W+CP+CG+DNRAQD TCQT TG+AV AQ+ RPDTW  ES E LGR AA                                          D   +R     R+G+DG++RC R RP MF+PTP+ARP G    R RPKGELLFD+LYRNPPTPSRRR K++L A+T+A
Sbjct:  321 WRSAPEVG---HGGGSYRANRQGFGGGAVGGXXXXXXXXXLGRRPASREAARQLRVSERMHRLGRAMAKRKXXXXXXXXXXXXXXXXXACSGRLNLCSKTRELTDNQPKYVYRRPTGRSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGDRLYSEWMASRKRNASLLAKTKAAXXXXXASRENASPEGWTCPECGADNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSGSR-----RVGEDGVRRCGRRRPEMFRPTPVARPSGDGAVRARPKGELLFDNLYRNPPTPSRRRAKQVLQADTRA 688
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BLAST of mRNA_S-dermatodea_contig10965.636.1 vs. uniprot
Match: A0A6H5JGR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.650e-29
Identity = 78/172 (45.35%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:  373 AGDRLYSEWQAERERKS----RRRDLEAAREAASPGAWSCPKCGSDNRAQDGTCQTVTGIAVPAQETRPDTWHHESSEQLGRAAAA--------------------KTAAGAGDDRNNRNNVK---------GRIGDDGLKRCARPRPPMFKPTPLARP-GQDTFRMRPKGE 786
            AGDRLYSEW A R+R +    + +   A RE ASP  W+CP+CG+ NRAQD TCQT TG+AV AQ+ RPDTW  ES E LGR AA                     K     GD R   +  +          R+G+DG++RC R RP MF+PTP+ARP      R RPKGE
Sbjct:  654 AGDRLYSEWMATRKRNASLLAKAKSAAAEREDASPEGWTCPECGAGNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAATASXXXXXXXXXXXXXRSTAVKPGGATGDQRGPESRRRYGXXXSSDSRRVGEDGVRRCGRRRPEMFRPTPVARPLDHGVVRARPKGE 825
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10965.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI24_ECTSI9.620e-5638.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGR6_9PHAE1.650e-2945.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10965contigS-dermatodea_contig10965:1993..3860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size871
Cds size870
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10965.636.1prot_S-dermatodea_contig10965.636.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10965 1993..3859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.7608364-CDS-S-dermatodea_contig10965:1992..22081622924181.7608364-CDS-S-dermatodea_contig10965:1992..2208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 1993..2208 +
1694079074.2071147-CDS-S-dermatodea_contig10965:1992..22081694079074.2071147-CDS-S-dermatodea_contig10965:1992..2208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 1993..2208 +
1622924181.7691998-CDS-S-dermatodea_contig10965:2573..28601622924181.7691998-CDS-S-dermatodea_contig10965:2573..2860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 2574..2860 +
1694079074.2153783-CDS-S-dermatodea_contig10965:2573..28601694079074.2153783-CDS-S-dermatodea_contig10965:2573..2860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 2574..2860 +
1622924181.780855-CDS-S-dermatodea_contig10965:3214..34971622924181.780855-CDS-S-dermatodea_contig10965:3214..3497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 3215..3497 +
1694079074.2277975-CDS-S-dermatodea_contig10965:3214..34971694079074.2277975-CDS-S-dermatodea_contig10965:3214..3497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 3215..3497 +
1622924181.7938097-CDS-S-dermatodea_contig10965:3775..38591622924181.7938097-CDS-S-dermatodea_contig10965:3775..3859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 3776..3859 +
1694079074.236651-CDS-S-dermatodea_contig10965:3775..38591694079074.236651-CDS-S-dermatodea_contig10965:3775..3859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 3776..3859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10965.636.1

>prot_S-dermatodea_contig10965.636.1 ID=prot_S-dermatodea_contig10965.636.1|Name=mRNA_S-dermatodea_contig10965.636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=290bp
WESAPECGGKANAGRHGRDSRWRSRGAAGRRPVSRDAFRQLHVSERLYHM
AGVFARKRESARKRRDDLQKAREAQVTSGRLSLCSKTRELTDNLPRYTYG
RRSDKVEVNAEGDRWKGGGGGYQDAGDRLYSEWQAERERKSRRRDLEAAR
EAASPGAWSCPKCGSDNRAQDGTCQTVTGIAVPAQETRPDTWHHESSEQL
GRAAAAKTAAGAGDDRNNRNNVKGRIGDDGLKRCARPRPPMFKPTPLARP
GQDTFRMRPKGELLFDDLYRNPPTPSRRRTKRILDAETKA
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mRNA from alignment at S-dermatodea_contig10965:1993..3860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10965.636.1 ID=mRNA_S-dermatodea_contig10965.636.1|Name=mRNA_S-dermatodea_contig10965.636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1868bp|location=Sequence derived from alignment at S-dermatodea_contig10965:1993..3860+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGAGTCGGCCCCGGAGTGCGGTGGCAAGGCAAACGCGGGGCGACATGG
AAGGGATTCGAGATGGCGCAGTAGAGGAGCCGCGGGTAGAAGGCCGGTGT
CGAGGGATGCTTTCCGGCAGCTTCATGTGTCGGAAAGGCTGTACCATATG
GCGGGGGTCTTCGCGAGGAAGAGGGAGAGCGCGAGAAAGCGTCGAGACGA
CCTGCAGAAAGCAAGGGTAAGTGATGTAGTGGCATTTCAGGCCTCGTTGC
TCTGCACAAGAAGCGCGATGCGCTGCCGTTTAACGTCTTTGGGAGTAGGT
GGAAACGTAATGGAAATACAATATCGCGCGAAATCGAACATCTTGGATGA
CGACTAAGTATTTTACGGACGCGCCAACGAAGGCGGGGGAAGAGGGTACA
GGCACGCAAGCTTTCGTCCGATTCGACGTATTTAGGCCAAACTATAGACG
CCACCGCGCTGCAAGCGCGTTGTGACTTGCTGAGATAGCCATAGCCTGGT
CGATCATAAAGTCATGGCGGCCTTCCCGAACAAGCGCGCTTTTGTCTTTC
TATTCCCCCTGCCCGCCGATTCGGCAAACAGGAGGCTCAGGTGACCTCGG
GCCGCCTTAGTCTGTGCTCGAAGACACGGGAGCTAACGGACAATCTTCCC
AGGTACACCTACGGTCGACGAAGTGACAAGGTCGAAGTGAACGCGGAGGG
AGACAGATGGAAGGGGGGCGGGGGCGGTTACCAGGACGCCGGTGACAGGC
TTTACTCTGAATGGCAGGCGGAGCGGGAGAGAAAATCTCGCCGTCGGGAC
TTGGAGGCGGCCCGAGAAGCGGCTTCGCCCGGAGCCTGGAGCTGCCCTAA
GTGTGGGAGCGACAACAGGTGAGAAGCTTTTCAGAGGCAGTTGGTGTGTA
GGATCGCTCTCTCTATTCAATAGTCAAGAGAGGCCTGGACAAATCTCAAC
GATTATTGTGCATGTGCATGGTGTTCCGCGAAACAGGGCGTGACTGAAAG
GGCGTACATCTCTCTCTCTCTTTATCTCTCTCTGCCTCAACCAAGCCATG
CGGTCGTGCGAGAGCCTATCGGTAAGGTATCTATGAGTGAAAAAACGCCC
CCTTCACGGCTACCTGCCTGTTCCCTGTCACATCAAAGCGCCGAATACTA
GTCGATTGTCGCAGAATCCCACACATTGTTGTGCGTGATAGACGCAGCCC
ACGTTCCACTCGACACATACAGGGCGCAAGACGGCACTTGCCAGACGGTA
ACAGGGATTGCCGTCCCCGCCCAAGAAACTCGACCAGACACGTGGCACCA
CGAGAGTTCCGAGCAACTAGGCAGGGCGGCAGCTGCCAAAACGGCGGCGG
GGGCGGGTGACGACAGAAACAATAGAAATAACGTGAAAGGCCGGATAGGA
GATGACGGGCTAAAGCGATGCGCGAGGCCGAGGCCGCCGATGTTCAAACC
CACCCCGTTGGCAAGACCGGGCCAAGACACCTTCCGTATGAGACCTAAGG
GCGAGGTGGGAAAGCCCCCCTCGGTTTGGATCAGGGCAGAGGCTAGCTAG
CTGATTTTTTGCTTGCCCGCCGAAAGGGAGGGCGCAAGGGATTTGTAATG
CTGCTCGTCTACCGTCTCCGCAGATCTAGAACTCAACTTGTTTAGTTAGT
CTACTGTCGAATTTAACTCGTTGAACCTTGCCTTTTCGCTTTGCGGCTGC
TTGACCCCCATCGATTTCGCCAATACTTATTTCTCTCTATATTTCTCTGT
CGCTCCGATGCATCTGGCGTGTACGGAGGGCAGCTTCTGTTCGACGATCT
ATATCGAAATCCACCAACACCAAGTCGGAGGAGGACCAAGCGAATTCTCG
ACGCTGAGACGAAGGCAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10965:1993..3860+

>mRNA_S-dermatodea_contig10965.636.1 ID=mRNA_S-dermatodea_contig10965.636.1|Name=mRNA_S-dermatodea_contig10965.636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at S-dermatodea_contig10965:1993..3860+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGAGTCGGCCCCGGAGTGCGGTGGCAAGGCAAACGCGGGGCGACATGG
AAGGGATTCGAGATGGCGCAGTAGAGGAGCCGCGGGTAGAAGGCCGGTGT
CGAGGGATGCTTTCCGGCAGCTTCATGTGTCGGAAAGGCTGTACCATATG
GCGGGGGTCTTCGCGAGGAAGAGGGAGAGCGCGAGAAAGCGTCGAGACGA
CCTGCAGAAAGCAAGGTGGGAGTCGGCCCCGGAGTGCGGTGGCAAGGCAA
ACGCGGGGCGACATGGAAGGGATTCGAGATGGCGCAGTAGAGGAGCCGCG
GGTAGAAGGCCGGTGTCGAGGGATGCTTTCCGGCAGCTTCATGTGTCGGA
AAGGCTGTACCATATGGCGGGGGTCTTCGCGAGGAAGAGGGAGAGCGCGA
GAAAGCGTCGAGACGACCTGCAGAAAGCAAGGGAGGCTCAGGTGACCTCG
GGCCGCCTTAGTCTGTGCTCGAAGACACGGGAGCTAACGGACAATCTTCC
CAGGTACACCTACGGTCGACGAAGTGACAAGGTCGAAGTGAACGCGGAGG
GAGACAGATGGAAGGGGGGCGGGGGCGGTTACCAGGACGCCGGTGACAGG
CTTTACTCTGAATGGCAGGCGGAGCGGGAGAGAAAATCTCGCCGTCGGGA
CTTGGAGGCGGCCCGAGAAGCGGCTTCGCCCGGAGCCTGGAGCTGCCCTA
AGTGTGGGAGCGACAACAGGAGGCTCAGGTGACCTCGGGCCGCCTTAGTC
TGTGCTCGAAGACACGGGAGCTAACGGACAATCTTCCCAGGTACACCTAC
GGTCGACGAAGTGACAAGGTCGAAGTGAACGCGGAGGGAGACAGATGGAA
GGGGGGCGGGGGCGGTTACCAGGACGCCGGTGACAGGCTTTACTCTGAAT
GGCAGGCGGAGCGGGAGAGAAAATCTCGCCGTCGGGACTTGGAGGCGGCC
CGAGAAGCGGCTTCGCCCGGAGCCTGGAGCTGCCCTAAGTGTGGGAGCGA
CAACAGGGCGCAAGACGGCACTTGCCAGACGGTAACAGGGATTGCCGTCC
CCGCCCAAGAAACTCGACCAGACACGTGGCACCACGAGAGTTCCGAGCAA
CTAGGCAGGGCGGCAGCTGCCAAAACGGCGGCGGGGGCGGGTGACGACAG
AAACAATAGAAATAACGTGAAAGGCCGGATAGGAGATGACGGGCTAAAGC
GATGCGCGAGGCCGAGGCCGCCGATGTTCAAACCCACCCCGTTGGCAAGA
CCGGGCCAAGACACCTTCCGTATGAGACCTAAGGGCGAGGGCGCAAGACG
GCACTTGCCAGACGGTAACAGGGATTGCCGTCCCCGCCCAAGAAACTCGA
CCAGACACGTGGCACCACGAGAGTTCCGAGCAACTAGGCAGGGCGGCAGC
TGCCAAAACGGCGGCGGGGGCGGGTGACGACAGAAACAATAGAAATAACG
TGAAAGGCCGGATAGGAGATGACGGGCTAAAGCGATGCGCGAGGCCGAGG
CCGCCGATGTTCAAACCCACCCCGTTGGCAAGACCGGGCCAAGACACCTT
CCGTATGAGACCTAAGGGCGAGCTTCTGTTCGACGATCTATATCGAAATC
CACCAACACCAAGTCGGAGGAGGACCAAGCGAATTCTCGACGCTGAGACG
AAGGCACTTCTGTTCGACGATCTATATCGAAATCCACCAACACCAAGTCG
GAGGAGGACCAAGCGAATTCTCGACGCTGAGACGAAGGCA
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