prot_S-latissima_F_contig104.360.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig104.360.1
Unique Nameprot_S-latissima_F_contig104.360.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length2590
Homology
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BLAST of mRNA_S-latissima_F_contig104.360.1 vs. uniprot
Match: A0A6H5L2G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 6.640e-35
Identity = 143/416 (34.38%), Postives = 208/416 (50.00%), Query Frame = 0 
Query: 2219 RREAAVLMQKNRRQLVARQAFLALRVASVKL----------QTCYRRRRATKTIQRAARLYLFNSGREKAANLLQTSYRLSTRTKKARRERRKIVAAAGALQRVARGWAVRRAVREVLEAQRRNDAAAVVQRSLGRYLAAQKIRRRRLAAAVTICGAVEIFSVKLSRSRLKRNTVAVTTVQSVYRGYRSRVTTGARL---AELKGAATKVQTLFRSRHQEERVSFI-----------------------LRRAQRRNEAAKNEQNLPETKPTRQNHPLATSSTGVVTPAVSSEGPGHAASSAKFEEKMTQVDLSSVCGEATGGK---RDDKNSPPPVATGEDRAARR---------RCREREALQSAVQAVARGMARQGAITPDDARGLAQTLSLGEDDPALEAALRRQLSGLQSA 2586
            RREAA  +QK RR+L  R+A++ LR ASVK+          + C++RR A   +Q+A+R ++FN+ R +AANLLQ++YR S R K  R+ER+KI+ AA  LQR AR W  RR V    E QRRN AAA +Q ++ R+L  +K  R+ +AAA+T+   +   SV LSR R +R +VA T +Q+V R Y S V T   L    + + AAT++Q   R R   + ++ +                       ++  +RR  A K +  L                              H    A++  +  Q  L  V   A   K   +D K    P  T E R +           R  +R  +Q AV+++A+GM R+G + P  A  L+ TL+LG+DDP LE ALR+ LS L+ A
Sbjct:   11 RREAATTLQKYRRRLTLRRAYVLLRSASVKVGANYRRWRTQRDCFQRRLAVGILQKASRRFVFNTRRRRAANLLQSAYRSSARVKHGRKERKKILDAANVLQRSARAWVARRVVGWRREVQRRNRAAAALQHAMWRHLWRRKKHRQHVAAALTLWKFMGGLSVTLSRIRKRRKSVAATRIQAVARQYISLVKTREILDMHRKERAAATRIQAACRGRRYRKHLTTLQVEXXXXXXXXXXXXXXXXHISRVKTIKRRACALKIQTLL------------------------------HPRRKARYTSRREQGAL--VLQRAWRRKIIGQDAKTQDEPTTTSEQRRSSSATSPRPEPPRTLDRANVQLAVESLAKGMRRRGVLDPIIAENLSDTLALGQDDPVLEVALRQGLSNLEQA 394
[Close]
BLAST of mRNA_S-latissima_F_contig104.360.1 vs. uniprot
Match: D8LDJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ1_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.720e-30
Identity = 138/421 (32.78%), Postives = 199/421 (47.27%), Query Frame = 0 
Query: 2219 RREAAVLMQKNRRQLVARQAFLALRVASVKLQT----------CYRRRRATKTIQRAARLYLFNSGREKAANLLQTSYRLSTRTKKARRERRKIVAAAGALQRVARGWAVRRAVREVLEAQRRNDAAAVVQRSLGRYLAAQKIRRRRLAAAVTICGAVEIFSVKLSRSRLKRNTVAVTTVQSVYRGYRSRVTTGARL--------------AELKGAATKVQTLFRSRHQEE----------------RVSFILRRAQRRNEAAKNEQNLPETKPTRQNHPLATSSTGVVTPAVSSEGPGHAASSAKFEEKMTQVDLSSVCGEATGGKRDDKNSPPPVATGEDRAARR---------RCREREALQSAVQAVARGMARQGAITPDDARGLAQTLSLGEDDPALEAALRRQLSGLQSATDRS 2590
            RREAA  +QK RR+L  R+A++ LR ASVK++           C++RR A   +Q AAR ++FN+ R +AANLLQ++YR S R K  R+ER+KI+ AA  LQR AR W  RR V +  + +R+N AAA +Q ++ R+L  +K  R+ +AAA+T+   +   SV LS  R +R + A T +Q+V R Y S V T A L                 +G   ++        Q+E                RV  I  RA                            +  +    +        AS  + E +   + L         G+ D K    P  T E R +           R  +R  +Q AV+A+A+GM R+G + P  A  L+ TL+LG+DDP LE ALR+ LS L+ A  RS
Sbjct:    7 RREAATTLQKYRRRLALRRAYVLLRSASVKVEANYRRWRAQRNCFQRRLAVGILQEAARRFVFNTRRRRAANLLQSAYRSSVRVKHCRKERKKILDAANVLQRSARAWVARRVVGQRRKVRRQNRAAATLQYAMWRHLLRRKKHRQHVAAALTLWKFMGGLSVTLSAIRKRRKSAAATRIQAVARQYISLVKTRAILDMHRKEXXXXXXXXXACRGRRCRIHLSTLLLEQDECHXXXXXXXXXXXXXXRVKTIQHRA---------------------------CAVKIQIFLLQQRRKARFASRCEREREQGALVLQRAWRWRIIGQ-DAKTQDEPTTTSEQRRSSLATSPRPEPLRAVDRANVQLAVEALAKGMRRRGVLDPIIADNLSDTLALGQDDPVLEVALRQGLSNLEQALARS 399
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig104.360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2G6_9PHAE6.640e-3534.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDJ1_ECTSI5.720e-3032.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2052..2072
IPR000048IQ motif, EF-hand binding siteSMARTSM00015iq_5coord: 2301..2323
e-value: 59.0
score: 7.3
coord: 2380..2402
e-value: 8.6
score: 14.2
coord: 2164..2186
e-value: 0.12
score: 21.5
coord: 2241..2263
e-value: 240.0
score: 2.2
coord: 2114..2136
e-value: 23.0
score: 10.6
coord: 2218..2240
e-value: 190.0
score: 3.1
coord: 2187..2209
e-value: 320.0
score: 1.2
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 2304..2331
score: 7.346
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 2188..2217
score: 6.998
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 2381..2410
score: 7.712
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 2165..2194
score: 7.236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig104contigS-latissima_F_contig104:56729..79834 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig104.360.1mRNA_S-latissima_F_contig104.360.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig104 56729..79834 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig104.360.1 ID=prot_S-latissima_F_contig104.360.1|Name=mRNA_S-latissima_F_contig104.360.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=2590bp
LISVTPPYVRASLPSKPSGVDSIARTGPLHGPILTHAVFQANGRTREGES
LTTPTANAVEYLSKEEDAGRHVSLSLGPAGMPLVSEGGFPPVLRLEIVGG
RSLGRCDLSLTEALRRPGSTLKQMKAPIWREEGKRQPNCRNRSSTDGGAA
GNGAKQNEAVCDGTRRFSTGQVHFDVGVRLTEQAQSSPPEVNTSTEPTVS
FVRVEAIGIRVAGARGGGPDSGIEQFDRIIGVSAELALGDETRLATIDPG
HLDVSGKNGGPTSAAHLGSQHRSAVLTSTCAEIDILVLRLERRPRKPQIG
ESTSTSRDPRDWDDGEDGKGNALSMPVSDINDCFCRRAQWVAVDGFREDA
PTKKVGNQNNTSGQEGSGGHHLEIQLRVTVTQASPTNQYSLGGTVSEDGQ
LVAGSVPRPGTCRFTGSPFDKNSAFGATNPDASWSAFEAWVLSRRNGCGQ
SHAIISATGSGEPPPRAGRTLKTVDGVRGSAGPGQGPGVLRLEVLAMHGQ
AVDLAETETGEGRRLSEPQRWWVRVTVSDGGGGSVTVDSPLGEVGEGVWQ
DGQNAAGGQAKCSIVVRWPAGNSSRAECAVHWTPRKRVLPTASLAIFRGK
MLTAESTLELPPIIMSSGRVLTFLHPCIASPAGDGSPFERSKFFLELRGM
FASSSSGHGSDEGYGSFNPRLAPGPRIARPAQSGGILCIQVLAVRRLHRA
VRSAVALPFLVVFSLPPDKKSCCSATSIPPTADENGRRGQQDVRTAYDKR
GDVASLRIEPCRLGSVTVLASLFGGYVSNTTGVNLPSGQDNVTEHLRLLG
STWLAMSDDVMKRGHLHDGWHPLRIGGSSAGAKACEMRLGVHFMPDFPST
AGTAEQPPGQESDDANYVSIILEEGRELSHPDMPVGPLDLFAEVCVHYQP
RGSERRSPTGGEPTRTVPGGASQRYERVVGPLPLREAPSNAAANSVGSAP
CWRHLLRVPLPPALLRILRSASPANRTGGSASATAVLAVEIKSASRRVVD
RRLPPGACSSCNIVPGSVAIQGEQVVERCLLIGVARLRLPSYTLQREHGR
EYSPISGWYVVKEENSGAHRGKVKLSVLPPNWSARVQTFGKQGNNNNTNR
RGVSCSDQRGTHRRGSVAPAKSARAKLQRASAAGCSNVGIDGSLSDSSVT
SEDSDKAVLAMLRQAGGARRGREEESGLLIVSVSCPTIRSSGKDKTPDGH
ASLLGATVSLQYKLDHNVPALTDRHLYSNSSRGEGPPSSLRTEPANFLGN
VNGKDPVTTRPLPLTHHQVRVKAPPRSHATYHGVTSLVPCFSSLGLEIQE
KRDLAREKVGSRGVHRRASSPSGSPALSAGGRSPSREEGRKGRAREATTF
CTVSVTTTYVPHTSGVLEVNPSELRLTPPSTEDINRWCAYTELRGATEPR
ASAARVPRASQDGGLACATRCVLLRVRVLPSGPWAFTRTFQANWPRPMEW
ARDTSNAGLTRIPAWAPVALEVDTSIHAKRRTSTSSTGAADVSSGGELEA
LTLEICLFDNLPSFPSSLLGRGTLPLTPSIAAGCNQNRHGQRKATSSQTP
KRDVSDVQADKEVALVDPVSGIKVASVALCVTFLHGGRASSGAAAHLRNL
ADADGGVSAVDASASAAAWSLKSKFYHLDHRNTGAVPLDALLDSISTSEW
SWGESRESYADGSMGPKEGQVNGHGAVLDRSKALGPRERRRFSDQSSTGV
NVDDGKRWIRRLLEPLVSPISKYDGVVPWEVWAALWEVLCHPRESAQITP
ASVWKRAAELQSATLCSSNCCSKEHESPIERHATERKPRTGRDSGAHASQ
GKTICGYNNNKRNSGPDEVPNGYDVVTFVADEGPLKNPARNEALVGGNVF
QATSPPTRPTAARRRLHRTLATSQRVWSRKHQPQPHLGPTNGVKRSVSPE
KCAIVESPLGGSNRASRPGVTEPNLRPATEPPRCRSNTNVAPSSSPARPA
SAEHRPPTAASEVAMGLDPSSSGREPPTWIGAWGTAAEGALTRVGAWGVA
AEGGVVGTERDTTAREMVMRRLELDNSQKETSSAKRKASRYKACMLEAQS
FLDEERRRIVLLEERALGFERQLLQRDRVRIHEAARARTRFLELEMNRTR
RSDRLIAKRTRERAEVVAATMLQLRAKGFVQRIRYKAQLVTIVALQRMVR
LRREARSRRRHRARRLSAALLLQSLWRGRLTRKLLAARATLTTKAQALVR
GGLQRARIRDALQAHLRRRREAAVLMQKNRRQLVARQAFLALRVASVKLQ
TCYRRRRATKTIQRAARLYLFNSGREKAANLLQTSYRLSTRTKKARRERR
KIVAAAGALQRVARGWAVRRAVREVLEAQRRNDAAAVVQRSLGRYLAAQK
IRRRRLAAAVTICGAVEIFSVKLSRSRLKRNTVAVTTVQSVYRGYRSRVT
TGARLAELKGAATKVQTLFRSRHQEERVSFILRRAQRRNEAAKNEQNLPE
TKPTRQNHPLATSSTGVVTPAVSSEGPGHAASSAKFEEKMTQVDLSSVCG
EATGGKRDDKNSPPPVATGEDRAARRRCREREALQSAVQAVARGMARQGA
ITPDDARGLAQTLSLGEDDPALEAALRRQLSGLQSATDRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS