mRNA_S-latissima_F_contig104.360.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig104.360.1 vs. uniprot
Match: A0A6H5L2G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G6_9PHAE) HSP 1 Score: 151 bits (381), Expect = 6.640e-35 Identity = 143/416 (34.38%), Postives = 208/416 (50.00%), Query Frame = 1
Query: 6655 RREAAVLMQKNRRQLVARQAFLALRVASVKL----------QTCYRRRRATKTIQRAARLYLFNSGREKAANLLQTSYRLSTRTKKARRERRKIVAAAGALQRVARGWAVRRAVREVLEAQRRNDAAAVVQRSLGRYLAAQKIRRRRLAAAVTICGAVEIFSVKLSRSRLKRNTVAVTTVQSVYRGYRSRVTTGARL---AELKGAATKVQTLFRSRHQEERVSFI-----------------------LRRAQRRNEAAKNEQNLPETKPTRQNHPLATSSTGVVTPAVSSEGPGHAASSAKFEEKMTQVDLSSVCGEATGGK---RDDKNSPPPVATGEDRAARR---------RCREREALQSAVQAVARGMARQGAITPDDARGLAQTLSLGEDDPALEAALRRQLSGLQSA 7758
RREAA +QK RR+L R+A++ LR ASVK+ + C++RR A +Q+A+R ++FN+ R +AANLLQ++YR S R K R+ER+KI+ AA LQR AR W RR V E QRRN AAA +Q ++ R+L +K R+ +AAA+T+ + SV LSR R +R +VA T +Q+V R Y S V T L + + AAT++Q R R + ++ + ++ +RR A K + L H A++ + Q L V A K +D K P T E R + R +R +Q AV+++A+GM R+G + P A L+ TL+LG+DDP LE ALR+ LS L+ A
Sbjct: 11 RREAATTLQKYRRRLTLRRAYVLLRSASVKVGANYRRWRTQRDCFQRRLAVGILQKASRRFVFNTRRRRAANLLQSAYRSSARVKHGRKERKKILDAANVLQRSARAWVARRVVGWRREVQRRNRAAAALQHAMWRHLWRRKKHRQHVAAALTLWKFMGGLSVTLSRIRKRRKSVAATRIQAVARQYISLVKTREILDMHRKERAAATRIQAACRGRRYRKHLTTLQVEXXXXXXXXXXXXXXXXHISRVKTIKRRACALKIQTLL------------------------------HPRRKARYTSRREQGAL--VLQRAWRRKIIGQDAKTQDEPTTTSEQRRSSSATSPRPEPPRTLDRANVQLAVESLAKGMRRRGVLDPIIAENLSDTLALGQDDPVLEVALRQGLSNLEQA 394
BLAST of mRNA_S-latissima_F_contig104.360.1 vs. uniprot
Match: D8LDJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ1_ECTSI) HSP 1 Score: 136 bits (343), Expect = 5.720e-30 Identity = 138/421 (32.78%), Postives = 199/421 (47.27%), Query Frame = 1
Query: 6655 RREAAVLMQKNRRQLVARQAFLALRVASVKLQT----------CYRRRRATKTIQRAARLYLFNSGREKAANLLQTSYRLSTRTKKARRERRKIVAAAGALQRVARGWAVRRAVREVLEAQRRNDAAAVVQRSLGRYLAAQKIRRRRLAAAVTICGAVEIFSVKLSRSRLKRNTVAVTTVQSVYRGYRSRVTTGARL--------------AELKGAATKVQTLFRSRHQEE----------------RVSFILRRAQRRNEAAKNEQNLPETKPTRQNHPLATSSTGVVTPAVSSEGPGHAASSAKFEEKMTQVDLSSVCGEATGGKRDDKNSPPPVATGEDRAARR---------RCREREALQSAVQAVARGMARQGAITPDDARGLAQTLSLGEDDPALEAALRRQLSGLQSATDRS 7770
RREAA +QK RR+L R+A++ LR ASVK++ C++RR A +Q AAR ++FN+ R +AANLLQ++YR S R K R+ER+KI+ AA LQR AR W RR V + + +R+N AAA +Q ++ R+L +K R+ +AAA+T+ + SV LS R +R + A T +Q+V R Y S V T A L +G ++ Q+E RV I RA + + + AS + E + + L G+ D K P T E R + R +R +Q AV+A+A+GM R+G + P A L+ TL+LG+DDP LE ALR+ LS L+ A RS
Sbjct: 7 RREAATTLQKYRRRLALRRAYVLLRSASVKVEANYRRWRAQRNCFQRRLAVGILQEAARRFVFNTRRRRAANLLQSAYRSSVRVKHCRKERKKILDAANVLQRSARAWVARRVVGQRRKVRRQNRAAATLQYAMWRHLLRRKKHRQHVAAALTLWKFMGGLSVTLSAIRKRRKSAAATRIQAVARQYISLVKTRAILDMHRKEXXXXXXXXXACRGRRCRIHLSTLLLEQDECHXXXXXXXXXXXXXXRVKTIQHRA---------------------------CAVKIQIFLLQQRRKARFASRCEREREQGALVLQRAWRWRIIGQ-DAKTQDEPTTTSEQRRSSLATSPRPEPLRAVDRANVQLAVEALAKGMRRRGVLDPIIADNLSDTLALGQDDPVLEVALRQGLSNLEQALARS 399 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig104.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig104.360.1 >prot_S-latissima_F_contig104.360.1 ID=prot_S-latissima_F_contig104.360.1|Name=mRNA_S-latissima_F_contig104.360.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=2590bp LISVTPPYVRASLPSKPSGVDSIARTGPLHGPILTHAVFQANGRTREGESback to top mRNA from alignment at S-latissima_F_contig104:56729..79834+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig104.360.1 ID=mRNA_S-latissima_F_contig104.360.1|Name=mRNA_S-latissima_F_contig104.360.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=23106bp|location=Sequence derived from alignment at S-latissima_F_contig104:56729..79834+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig104:56729..79834+ >mRNA_S-latissima_F_contig104.360.1 ID=mRNA_S-latissima_F_contig104.360.1|Name=mRNA_S-latissima_F_contig104.360.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=15540bp|location=Sequence derived from alignment at S-latissima_F_contig104:56729..79834+ (Saccharina latissima SLPER63f female)back to top |