mRNA_S-latissima_F_contig995.17645.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig995.17645.1
Unique NamemRNA_S-latissima_F_contig995.17645.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Match: D8LAU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU5_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 3.080e-140
Identity = 193/244 (79.10%), Postives = 217/244 (88.93%), Query Frame = 2 
Query:  173 SQASKEKQDFLDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGKDTQRSEGLNQLHGAISTARVIFRMQGTAEAVWELKHVSGAEGWDSPVIRVLARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCIIDMYMNVIKGKELKKREEGVRRKLRDCQESELSPLRQKLSEIAALRRHIALQQWRMVFYLPNAVHWAFYKPPAHPLLVAIFGLAEAAVGIVQAFPP 904
            S  S+  +DFLDR VTFVAGTYRNDKCIKLLGYS ST++QIIRYRNGGKDT+RSEGLNQL+GA+STARVIFRMQGTAEAVWELKH+SGA+GWD   IR LARLQA+TN+FYHP+E+VALA  +APKL  VD+AWWWARSDWAWLAFCIIDMYMNV+KG+EL++REEGVRRKLRDC ESE + LRQ LS+IAA +R +ALQQ RMVFYLPNAVHWAF KPP HPL+VA  GL EAAVG VQAFPP
Sbjct:    3 SSQSEGAKDFLDRFVTFVAGTYRNDKCIKLLGYSLSTIAQIIRYRNGGKDTRRSEGLNQLYGALSTARVIFRMQGTAEAVWELKHLSGADGWDDVRIRPLARLQALTNVFYHPMEEVALAGGIAPKLFPVDQAWWWARSDWAWLAFCIIDMYMNVLKGRELRRREEGVRRKLRDCAESETAGLRQALSQIAASKRQVALQQLRMVFYLPNAVHWAFIKPPVHPLVVAALGLGEAAVGAVQAFPP 246
[Close]
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Match: A0A835YVI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI8_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.770e-50
Identity = 88/234 (37.61%), Postives = 140/234 (59.83%), Query Frame = 2 
Query:  203 LDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGKDTQRSEGLNQLHGAISTARVIFRMQGTAEAVWELKHVSGAEGWDSPVIRVLARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCIIDMYMNVIKGKELKKREEGVRRKLRDCQESELSPLRQK-LSEIAALRRHIALQQWRMVFYLPNAVHWAFYKPPAHPLLVAIFGLAEAAVGIVQAFP 901
            LD+ V + +  + +DK +K  GY+ S+++ ++R  NGGK T  +EGL++L+G +   R + R  GT +A+  +++ S    W    IR L + QA T + YHP+E V   A + PKLV ++  WW+A++ + W+A+ + D+Y++++K KELK+ +     +L    + E     Q  ++   A RR + LQ WR +FYLPNA+HW+F KP      VA  GLAEA VG+ Q FP
Sbjct:   11 LDKYVGYTSAYFYHDKVLKTGGYTCSSLAAVLRVLNGGKSTTLTEGLDKLYGEVGMTRCLTRFIGTTDALEAIRNDSWVGDWKDRRIRNLVKFQAWTMLIYHPMEHVGYLAYIVPKLVPLNGDWWFAKACYWWVAYVVADLYISLLKFKELKRSDAAAALQLEQAADDEARAAAQAAVAANQAKRRIVRLQVWRAIFYLPNAIHWSFVKPVLPKGAVAALGLAEAIVGLKQTFP 244
[Close]
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Match: A0A7S0M254_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M254_9CRYP)

HSP 1 Score: 56.2 bits (134), Expect = 4.970e-6
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 2 
Query:  170 MSQASKEKQDFLDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGKDTQRSEGLNQLHGAISTARVIFRMQGTAEAVW-ELKHV---SGAEGWDSPVIRVLARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCIIDMYMNVIK 643
            MS  +      L ++V F +  +  DK +K   Y+F   S       G K    +EGL QL   +S  R+  R+ G    V  EL+++   S   GW+   I+     Q+VT + Y+PLE++A A  +AP+L  V+       S   W+ + +ID+Y   ++
Sbjct:    1 MSSVNSAPVQLLMQVVDFHSSVFGWDKTMKNFCYAFGLASCAASQIYGPKSAL-AEGLKQLGSNLSMYRMCTRIGGGPFGVPPELENMINHSWYGGWEDKRIKWCVWWQSVTMLGYYPLENLAWAGYIAPRLFPVNADKLCQASCVFWVLWILIDIYATRLR 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LAU5_ECTSI3.080e-14079.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVI8_9STRA4.770e-5037.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0M254_9CRYP4.970e-629.01Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig995contigS-latissima_F_contig995:34534..43326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog112098.XP_008607189.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peroxisomal biogenesis factor 11 (PEX11)
EggNOG OGs2CXQZ@1,2RZ56@2759
Ec32 ortholog descriptionPeroxisomal biogenesis factor 11
Ec32 orthologEc-27_006350.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size937
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig995.17645.1prot_S-latissima_F_contig995.17645.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig995 34555..43157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817394.2011492-UTR-S-latissima_F_contig995:34533..345541622817394.2011492-UTR-S-latissima_F_contig995:34533..34554Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig995 34534..34554 -
1693926533.3445742-UTR-S-latissima_F_contig995:34533..345541693926533.3445742-UTR-S-latissima_F_contig995:34533..34554Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig995 34534..34554 -
1622817394.2799876-UTR-S-latissima_F_contig995:43157..433261622817394.2799876-UTR-S-latissima_F_contig995:43157..43326Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig995 43158..43326 -
1693926533.4113753-UTR-S-latissima_F_contig995:43157..433261693926533.4113753-UTR-S-latissima_F_contig995:43157..43326Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig995 43158..43326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817394.213045-CDS-S-latissima_F_contig995:34554..347691622817394.213045-CDS-S-latissima_F_contig995:34554..34769Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 34555..34769 -
1693926533.3548703-CDS-S-latissima_F_contig995:34554..347691693926533.3548703-CDS-S-latissima_F_contig995:34554..34769Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 34555..34769 -
1622817394.2243803-CDS-S-latissima_F_contig995:35352..354521622817394.2243803-CDS-S-latissima_F_contig995:35352..35452Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 35353..35452 -
1693926533.3633726-CDS-S-latissima_F_contig995:35352..354521693926533.3633726-CDS-S-latissima_F_contig995:35352..35452Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 35353..35452 -
1622817394.235252-CDS-S-latissima_F_contig995:36023..361471622817394.235252-CDS-S-latissima_F_contig995:36023..36147Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 36024..36147 -
1693926533.3722775-CDS-S-latissima_F_contig995:36023..361471693926533.3722775-CDS-S-latissima_F_contig995:36023..36147Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 36024..36147 -
1622817394.247891-CDS-S-latissima_F_contig995:37632..377711622817394.247891-CDS-S-latissima_F_contig995:37632..37771Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 37633..37771 -
1693926533.3815098-CDS-S-latissima_F_contig995:37632..377711693926533.3815098-CDS-S-latissima_F_contig995:37632..37771Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 37633..37771 -
1622817394.2580423-CDS-S-latissima_F_contig995:38454..385251622817394.2580423-CDS-S-latissima_F_contig995:38454..38525Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 38455..38525 -
1693926533.3945138-CDS-S-latissima_F_contig995:38454..385251693926533.3945138-CDS-S-latissima_F_contig995:38454..38525Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 38455..38525 -
1622817394.2688503-CDS-S-latissima_F_contig995:43059..431571622817394.2688503-CDS-S-latissima_F_contig995:43059..43157Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 43060..43157 -
1693926533.4030533-CDS-S-latissima_F_contig995:43059..431571693926533.4030533-CDS-S-latissima_F_contig995:43059..43157Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig995 43060..43157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig995.17645.1

>prot_S-latissima_F_contig995.17645.1 ID=prot_S-latissima_F_contig995.17645.1|Name=mRNA_S-latissima_F_contig995.17645.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=249bp
MSQASKEKQDFLDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGK
DTQRSEGLNQLHGAISTARVIFRMQGTAEAVWELKHVSGAEGWDSPVIRV
LARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCII
DMYMNVIKGKELKKREEGVRRKLRDCQESELSPLRQKLSEIAALRRHIAL
QQWRMVFYLPNAVHWAFYKPPAHPLLVAIFGLAEAAVGIVQAFPPPES*
back to top

mRNA from alignment at S-latissima_F_contig995:34534..43326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig995.17645.1 ID=mRNA_S-latissima_F_contig995.17645.1|Name=mRNA_S-latissima_F_contig995.17645.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=8793bp|location=Sequence derived from alignment at S-latissima_F_contig995:34534..43326- (Saccharina latissima SLPER63f female)
CGAACACATATCGTATGCATGCTCAGTGGGACATCCACCGATCCCTCCTC
ACCAGCTCGGCCTCCTGCGTGCCGAAGACTCTACCGTTTATCTCTGCGGG
GGTTGCCTTCTTCTGTCGCTCAGGACAGAGCTCGGCAAAAGACGTCCAGG
CGAAACTTGGCGGCGAAACATGTCTCAAGCTTCGAAAGAAAAACAGGACT
TCCTGGACCGATTGGTGACCTTCGTCGCGGGCACCTATCGCAACGATAAG
TGTATCAAGCTGCTGGGGTGAGTTACGGCTGCGTCTTGCCAGCATGCGCC
TCGTCATCCACCATGCCCCCACGGGAACGGAGGCTACTGCGACTGCCCTG
TCTGAACTCTGAACCCGATGCCTGGGCATTCTTCCGTTCATGCAAGTGTT
CCGCTTTGATTCACGTAAGCTTCAACTCGCGAAACGTTTACCTCAGAGGT
GCCAAAGACAACGCTACCGGAGAACCGACTCGCCCTCTCGATCTGTGGAT
GTGTCCTGGTACTGGGGCTCTATGGCACCAGGCATGCCCTCTGTCTTGCA
TTGGCCGCAGCTTTTCGCATACAATGTAATAGCATGGCAAGCGCTGGTCG
TCGATGGCCTACGGGTCTTTTTAAACAGCACGACTACTCGAACAAGTACG
AGAGGCGGGGTGTTTTTGTTCCGGGCTAAATAGCCAACAAACAACAAACA
AGTTGTATGTACTCGTATACATACCTGCTGTGGTACCTGGTAGCGAGACG
CGAGACAGATCAAATCAAATCGAACCGACGTATGATACGAGTACCGTACG
TACTCACGTACTCTTATGAGGTCAGCCTCGAAGGTCTACTGCACGAGCTG
CCACGAATACCTTCAGATCTATATACCAGGTACTGCAAATTCAGTGGCCG
GTGGGACCTGGGACGCTGATGTGCGGCGGTATCGTAGAATATGTGCCCGT
ATCATATGATGGAGTACTGCTGTACCAGGTATAGCAGAGCATACTGGTAC
GCCGGTATACACGGGACACGGGCATACCTACAACAGCAGTATTTAATAGT
ATATAGCTTTCATTCCAGTCGGTTTTCGGTTATGCCATTTGGCCGGGACA
GATCCGTACCCAAGGATTTTGCGAGCGATCGAGGGGGGAAATCGTGTGAG
CACGTGGGCACGGCAGACGAGGCGCTTATTTTCGAAGCTGGAGTTACTTG
AAACGGCGCACGTATATATAAACGTAGTAACTTTAATTGTTTACTTACAT
TTTTCAAGAAGGCCTTATTCTCCCAGTGCTCCCACTTGATTGCTAGTCTG
ACCGTAAATATAAGCAACTTCCTGACATAGCAAAAAATATAGAAGGTAAT
ACTGTGGAATCTGATGGCCGCAGTTCGATTCCCAGCATCGTCACTATCTC
CCTTTTTTTGGCACTATTTTGTTTTTCATTTTTTTTTTTTTTGCTTTGTG
TATGTCGACCCAACGAAGTAGCACTCGGACCTGATTATTTGTTTCTGCCG
GTTGTGAGCAATGCTGTATGATAATACTTGCAACGAGCAGTTCTTTACAT
GGCCAGAAGTACCAAAAATACGATAGCAAAAACCAATGTAAAAAAAGTCG
ATTTTTCGGCTTGGGAGAGCTCAGTAATTCTCAGAAAAAATCCTTACTGG
AAAAATTGCGCGAAATCCCAGGTATGGGGGGGGGGGGTGATATCTAACCA
TCCCCGGGTCAACTGATGAAAATTTGGAACCCTCTAGACTACATGATGAT
ACGAATGTTAACGATTCTGAGGTTCACCATTACAGTACCCCATGGGCTCT
ATTTAGGATGTTGCCTATATTTCACACCCTGGACAATTGACAATAGTCTA
ATTTCCTATTAATAGTTTCCTATTACAATTGACTGGCAATTGTGGTCGCC
AATTCCAATTAATTGGAACGCATCGAGCTCTATGGTACAGACAATTCCTA
TTAACAGACACCCACTAGGCCCTATCGTCCACCCAATTTATGCTAATATA
CACCCATCTACATTAATGGTTGAAGTAATTGTTATTACTCGTAGCAGTAA
CCACCGAAATCCCATTGCTGAACCCATAGTCTATTGAAATATAATATCCC
ATTCTATTGTAACGCTAATGGACAATTGCAGCATATTTTCGGTGCCAATT
GTGCTGGCAATTCCATTTAATTAATATTCTCCTAAATAAATTGTGCTGGC
AATTCTATTTAATTGACACCCCTCTAAATAAATTGTGCTGGCAATTCCAT
TCAATTGACACCCTCCCAAATAAATTGTGCTGGCAATTGCATTTAATTGG
CATCCTTCTAAATCAATTGTCCTGGCAATTCCATTTAATAGACATCCTTC
TCAACCAATTGTGCTGGCAATTCCATTTAATTGACATCTTTCTAAATTAA
TTGCGCGGGCAATTCCATTTAGTTGGCATCTTTCTATATAATTGTCCTGG
CAATTTCATTTATTTGGCAGGCTTCGAAAACAAATGTCCAGACAATCAGG
CATTTCCATTTCATCGACAATAATATGTTACCGGTCAATTGATTCCGGAC
GCTGCAATAGGAATTTGACACATCAATGTATGCATGAGGAAGCTATTTCT
TAAAGTTGCAAAGGCAAACGATTCATGAAGCAGTCTATTAATTGGAATCG
ACCAGACAACATATTTTTTCGGAGGATGCCCATTAAAATAAATATCTCGG
ACAAAATGTTTGGCGGCCGATTAATCACTAGGATTTTTTTTACATTCCCT
TTCTGCTTAAGCCTTGGACAATAGGCATCGCAATAGACTATTGCGCCTAC
AATTGACCCACCGAAAAGTCTATTAAATGAAATGAGGCGGACAATTGATT
CTTACCATATTGCTGCAATTGGAATTGCAAAGACAACAACATATTGTAGC
CCACCTACTAATTGGAATTGCTTAAGCAATTGTTTTAGAGCTCTGTTAAT
TAACTGGAATTGTCTCCTGCAACTTTTTCGCTCCGGAGACTCCAATACTC
CATTACTTCTTCAATAGGATATGGGACCTACCCGCAATGGACTATTGCTT
TTACAGTAGATCTTCCGGAAGTCCATTTAAATGGAATTGGTCGAGATGCT
GCTTTCGTGGTGCATCTATTAATAGGAATGGTTCGGCCAATAGATTTGTG
TCCTGGCCTTCTAATAGATATTGTTTCAGCAAATATTTTCTGGTCTTGTC
TCACAATTGGAATGGTTCAATCAAACCGTTTCTGCTCTCACCTTCCAATT
GGAATTGTTTCAATAATTTCTTTCTGTTCCTTTCTGTTAATAGGAATGGT
CGGATCAATAGGTTTCTGCCCTGACCTTCCAATTGAAATTGTTTCAACAA
TTAGTTTCAGGTCTTGCCTATCAATAGGAGTGGTTTGGTCAATAGGTTTC
TGTGCTGACTTTCCAAATTTAATTGTTGGTTGGGTCGATAGGCTTTGTCC
TGACCTTCCAATTGTTAGTGTTCGATCTTTTTTTCTGACCTCGACAATTC
CAATTAATAGACCGTACTTGAAATCATTTGGTTGGACAGTTTCAATTGGT
AGACAACACTCGAAACAAATTGGCTATACAAATCCGACTGATATAACTCA
CTCGGAATAATTTGACTGGGCAATTCCAATTAATAGAAATCACTCGAAAT
CATTTAGTTGGACAATTGCATTTAATAGATAGCATTTGAAACCAAGTGTC
TCGGCAATTCCAATTAACAGCCAGCACCCGATATCAATTGTAGGCACAAT
TCCAATTAGTAGGCAGCACCCAAAATCAGTTGCCCGGGCAATTTCAATTA
GTATACTACAATTGAAATCATTTGGTTGGGCAAATCCAATTAATAGACAG
CATCCGAAATCAGTTGTAGCCACAATAGACTATTTTGATAGGAATGGTCC
AAATAATTGTGCAGGCCATTCCAATTAATTGACAGCACCCAAAATCAGTT
GTCTGGACAATTCCAATTAGTAGGCAGCATCCAAAATAAATTACCCGGAC
AATTCAAATTAATATACTGCAATCAAAATCATTTGGTTGGGCAATTCCAA
TTAATAGACTACACCCAAAAATAATTATAGACACAATAGACTATTGAAAT
AGGAATTGTCCAGGGTGTGCGATATTTACGGTTTTCCTAAAGTTGCTTAT
ATTTACGGTCAGACGGGTATTAAATAGTGTCACCATCGTATGTATGCGCC
CCCTTTTCGTCGTTTCGTGTGCTGCCGGTTTGCCGTCCGCCCTGTACCTC
TCCAATGGTTGTGACTACAATGGTTGTGGTTACAACGGTTGTGGCTTCAA
CAATTGTGTCTACAATGGTTTGTGTCCCCCATGGTTTCGGCTCCGATTGT
CTTGGATTCAATTGTCGTGGATGCAATGGTTATGTCTTCAATGGTTATGT
CTCCAATGATGTTGTCTCCAATGGTTTTGCATCCAACAACTGTTTAGGGT
TGGGCACTGGCACAGTATGTACTGGCAGTAGTAATCTACTGATTGACCCG
GCCGGTATATCCGCCAGTAGTTTTTTTCTTACGTACGTCCAAGAAATACG
CCATAGTATAGTACGGAAACCCACCAAATGCGTTTCGGAAGGAGAGAGGA
GAAAAGAGAGACAGCAGTATACTGCTGCGATCCAGTATACTGATTAATTT
TGACGACAGTATATTCGCTACTGACTGAGGCAGCCAGTGCCCATCTGATG
GTAATTGTTCCTCGTAAATTTTTTTTAATGGTTGTGTCTCCAATGGCTGT
GCCTCTACTGACTGTGTCTCCGACTGTTGTGGATTCCGATGGTTGTGGCA
GATACTCCTTCTCGACGGTCTCGCAAATCATTCGCTACCGCAACGGAGGC
AAGGACACGCAAAGATCTGAGGGTGAGCAAAAAGAGGGGCGAGGAGTCTG
TTACGTAGTCAAGATGTTTCAACCGTGGGCGACACCGACCCTTGCGCTTT
GCGAGGGGAGACAGAGATCTCTTTTTTTTCAAGTACCAGTTATTCCGTTA
CCGATGAGTCAACAACTTTTACAGCTGCGGCACAAAGAAGAGCATCGATC
GGGTACGTATTTCCCCGACGCTTGACAAGACACTTGCTCCACTCGCAGCA
GCTTCATCGGCAACAAAAACAATGTTTCTCGAGGTTACCCACCCCCGCTT
ATGATGCGCCCGCTGCCGAACGCATCACTGACCATGTCCCTTGGCGCTCA
CCAACTACTCAGGCACGGGGATCTTCCAGTTCGTGGTGCATTAGTTTCAA
TGCATCCTTGTAAGGCTAATGTGCAGAACGTTCCTGCAGATGTCGAGGAA
CGTTGATTTCCGCCCCTTCCGAAGTCCACCGACGGTTACAAACGGTTACA
GGCGACCGAAATAAACTATTGATGAAACGTACCATCAGCCGACGACATGT
AAGACCCCAAGCAATTTGCGGAGGGAAAGACAGCTCTCCCGACTCCCTCC
CACGAGGTTACAAGACCAACTACCGACGGAGCTCAAGAAATTGAACAAGC
AAGTTACCCTTCCTCCCGCCTATCCCCTACCCCCCCCCCCCCCCTCGTGA
TGCAGGCTTGAACCAATTGCATGGAGCCATATCCACTGCTCGAGTTATCT
TCCGGATGCAGGGCACTGCCGAGGCCGTTTGGGAGCTGAAGCACGTATCG
GGCGCAGAGGGTTGGGATAGCCCTGTGATCCGGGTGTTGGCACGGTGAGC
AGCCCGCGCTGTCGAAGCACAACCATATTATTGAATCACCCACACGAATG
AGAGATGCATCGACCGCCTTGCCTTGTTTTTACTGGGGGGGGGGGGGGGG
GGGGGCGTACTCATTTGTTGCTTGCCTTAGTCATTTGACCATTGACCACG
CATCCCTTTCGAGACGGAGCACCGTTCCTACTCCTAATAGAGACACCTCC
AACACTTGGGCGCTCATTACGTTGTTTCCATATATTACAAAGAAACTTTT
TGCTAATCTTATCCCCTTCCTGTTTCGCCGCCTGTGGCCACCATCTATCT
CCTAAGATAGCGATCGTTTTCTCGCTACTATTTAGTGTGCCAAACTGCTC
CATGTCACACTCGTCTATTTTTCTCATCTCCTCCTCGAACACATCCCTTT
CCTCCTTGTACCTATCACATTCTCCCACTATGTGAATTCTACTCTCTATG
GCCTTGCCACATGGGCACATCTGTGCATCTACTTCCTCCTCCTCCCGGCT
ACTGGTATACCTCCTTCTTCTTTCTGGCAGGTCCAGGTCCCCTACTCGAA
ATCGCAGTTTCAGCTTTTTCGCGAAGTCCATTGGGCCGTGCAGATACCTT
TTCATTCCTATTCCTTCTCTCAACCCCCCGTATATCTCTAAGTGTTCTTC
CCCTTCCACTTTCTTTCTTAGCGCTAGCCTTTCCCTTCTTTCTATCCTTT
CTTTTACTTCTGTCTTGTATCCGCTAAATTTCTCTATGGCCAGCATCTCT
TTTTGGTTTCCTATATCCTTCCATACTTTGGTTGCGGGTGGGAGAGGGGG
GGGGGGAGGGACCAAAGTAGATGAGGCCGGGGTGAGGGGGGGGTGGGGTG
GTGGAAAGGGGGTGGGATAGGAGGGTTGGGAGGGGGTGAGGGGGGTGGGG
GAATTGTGTCGACAAAGCCAAACGCTTGCCGTCTGTGGTAGGGGAAAATA
TTGCAGGCTTTCACTGCTGTCGGAAGGAGGTTTCGTTTAGACTGCGAGGA
GGGTGGGCCAATCGGCGCTCTTCGCTCTGAGCGGCGCTGGCCAATCGGCG
CGCTTCGCTTTCCTCGTCCTCCACCACGGCGCGACATTCTGACTGCGCCT
TTCCGTTGCTGCCGCGTGCCGATGACGCTAGAGAACCCGTAGCTTCAACG
TCCATCTGTGTTTCGATTTCCTCGACACGGTTTCAACTTGGGAACCTCAA
CACGTGACCCACTGCTAAAAAGCAAACATCCAGTCAATTTTCAAGTATTT
TGTTCCCGAAATGTGGGGGCAGTTCTAAAGCGGCTAACCTTTGCTTCAAG
CTTTGCGAGTCATTCCGCGCCCAGGCGATGTGCGTTGAGACAATCGAACC
CTAGCCACGCGTATCTCGTTTTTCATGGCTTGGGAGGCAGCGATTTCCCC
ACTACGTATGCAAATAACCCGCTCCGCCTCCTCCCCTGCCCCCCCCGCGT
CTTCCCGTACGTACCGCGGGCGCGCTTAGGCTGCAAGCGGTAACGAACAT
TTTCTACCACCCTTTGGAGGATGTTGCGTTGGCAGCGAGCGTCGCGCCGA
AGCTGGTTCGGGTGGATGAGGCATGGTGGTGGGCGCGATCCGACTGGGCA
TGGGTGAGAGAGTGCCTTCACAACATTTTGCGCTGTCTGTGGTTGTTGTT
GCTGCTGTTGCTGTTGTGCTGTTTCTCTTGCCGGTGGTGGTGGTGGTAGT
GGTGGTGTTGGTGATGTGTTCGCTATTTTCTCGCCGATCGTGGGAGAGGT
TCGTCGATCATAACGTCCCGTTTTTTAGCAAGCGGGCGTAGGGCAAGGCA
TCGGTTATGCGGTATAAGGCGGACGGGTTGGTGGTTGGATGGTCTCTTAC
CTACGGCTTGCCGTGCGGCATGGAACCAGCTACGATTTTCGGGGCTAGAT
GGCGCCAGCGAAAGATAAGGAGAACGATGGAGGAGCTACTCCCACTACCT
TGCAGCACTGTTAGCGCCGACGAAAGACTACCGTACGTATGTAGGAGTTT
CGTTGCGATGAACAGAAGCAGCGACGAAGGAGGTAGGTCCTACGCTTGCA
CACAAAATCTTCTAGTAGTACATATTATATAGCAGTCCGGGAAGCTCCCG
CGTGTCCTAGTGGCACAGTCTAAGAAGCGCCGTCCATCCCGCCCGCCCCC
TGTCGACCTGCTCGGTTTTTGCAGCTTGCCTTCTGCATCATCGACATGTA
TATGAACGTCATCAAGGGGAAGGAGCTCAAAAAGCGGGAAGAAGGCGTCC
GGAGAAAACTGAGGGACTGCCAGGGTGAGGGAACGAGTCTCCGCTTTTTT
TTGTGCCTTCTTGCTATTGATAGCGTTGAATCTTATTTTTTTTATGAAAG
TTTGTTTGATCATCAGTTTGTTCAATTCCCATATTTTCAAGCTGCGCATG
ATACTTGCGCATGATGCTATACTTGAAACTAATACATATGTATGTATTCA
CTTCGTGAAGTATTTAGCCCGTTTCCCTTCAAACCCCTTGAGCGCTTTGC
TCTTATTGTTGCATCGCACTTTACCTCAAAGAAGATCTCCCTTCCCCCTC
ATCCTCCCTCTCCCCTTTCTAATTAATGCCTCGGTTTTTACCGCGCGAAC
ATGCACGGCATAGCAGCCTCGCCCGCCATTAGCAGGTCTGATAACGTTAC
ATAACGACACATGGCGCAGCCCGTACGCCGGGAGCGACCGTCACGCGCAT
GCTGTTTTTTTAACTTTTTTTTACTACTGCAAAAACTATCCCATACTAAT
TCCAAGTAATTTGCCCAAAATACTCGTTGTTGTTGCGGTTCCAAAGTGAT
TATAATCACAGCCCCCTTCCCCCCGCGCGCCTTCGCCTCCGTCACACGCG
CGCGCAGAATCTGAGTTGTCTCCGCTGCGCCAAAAGCTGTCCGAGATCGC
CGCGCTGCGCCGACATATCGCGCTGCAGCAGTGGCGGATGGTGTTCTACC
TCCCGAACGCGGTGCATTGGGCGTTCTACAAACCGCCGGCCCACCCCCTC
CTCGTCGCAATCTTCGGCCTCGCGGAAGCCGCGGTGGGCATCGTTCAGGC
CTTCCCGCCTCCCGAATCTTAACGAAACCAAGCGGCGGGGTTT
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig995:34534..43326-

>mRNA_S-latissima_F_contig995.17645.1 ID=mRNA_S-latissima_F_contig995.17645.1|Name=mRNA_S-latissima_F_contig995.17645.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1494bp|location=Sequence derived from alignment at S-latissima_F_contig995:34534..43326- (Saccharina latissima SLPER63f female)
ATGTCTCAAGCTTCGAAAGAAAAACAGGACTTCCTGGACCGATTGGTGAC
CTTCGTCGCGGGCACCTATCGCAACGATAAGTGTATCAAGCTGCTGGGAT
GTCTCAAGCTTCGAAAGAAAAACAGGACTTCCTGGACCGATTGGTGACCT
TCGTCGCGGGCACCTATCGCAACGATAAGTGTATCAAGCTGCTGGGATAC
TCCTTCTCGACGGTCTCGCAAATCATTCGCTACCGCAACGGAGGCAAGGA
CACGCAAAGATCTGAGGATACTCCTTCTCGACGGTCTCGCAAATCATTCG
CTACCGCAACGGAGGCAAGGACACGCAAAGATCTGAGGGCTTGAACCAAT
TGCATGGAGCCATATCCACTGCTCGAGTTATCTTCCGGATGCAGGGCACT
GCCGAGGCCGTTTGGGAGCTGAAGCACGTATCGGGCGCAGAGGGTTGGGA
TAGCCCTGTGATCCGGGTGTTGGCACGGCTTGAACCAATTGCATGGAGCC
ATATCCACTGCTCGAGTTATCTTCCGGATGCAGGGCACTGCCGAGGCCGT
TTGGGAGCTGAAGCACGTATCGGGCGCAGAGGGTTGGGATAGCCCTGTGA
TCCGGGTGTTGGCACGGCTGCAAGCGGTAACGAACATTTTCTACCACCCT
TTGGAGGATGTTGCGTTGGCAGCGAGCGTCGCGCCGAAGCTGGTTCGGGT
GGATGAGGCATGGTGGTGGGCGCGATCCGACTGGGCATGGGCTGCAAGCG
GTAACGAACATTTTCTACCACCCTTTGGAGGATGTTGCGTTGGCAGCGAG
CGTCGCGCCGAAGCTGGTTCGGGTGGATGAGGCATGGTGGTGGGCGCGAT
CCGACTGGGCATGGCTTGCCTTCTGCATCATCGACATGTATATGAACGTC
ATCAAGGGGAAGGAGCTCAAAAAGCGGGAAGAAGGCGTCCGGAGAAAACT
GAGGGACTGCCAGGCTTGCCTTCTGCATCATCGACATGTATATGAACGTC
ATCAAGGGGAAGGAGCTCAAAAAGCGGGAAGAAGGCGTCCGGAGAAAACT
GAGGGACTGCCAGGAATCTGAGTTGTCTCCGCTGCGCCAAAAGCTGTCCG
AGATCGCCGCGCTGCGCCGACATATCGCGCTGCAGCAGTGGCGGATGGTG
TTCTACCTCCCGAACGCGGTGCATTGGGCGTTCTACAAACCGCCGGCCCA
CCCCCTCCTCGTCGCAATCTTCGGCCTCGCGGAAGCCGCGGTGGGCATCG
TTCAGGCCTTCCCGCCTCCCGAATCTTAAAATCTGAGTTGTCTCCGCTGC
GCCAAAAGCTGTCCGAGATCGCCGCGCTGCGCCGACATATCGCGCTGCAG
CAGTGGCGGATGGTGTTCTACCTCCCGAACGCGGTGCATTGGGCGTTCTA
CAAACCGCCGGCCCACCCCCTCCTCGTCGCAATCTTCGGCCTCGCGGAAG
CCGCGGTGGGCATCGTTCAGGCCTTCCCGCCTCCCGAATCTTAA
back to top