prot_S-latissima_F_contig995.17645.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig995.17645.1
Unique Nameprot_S-latissima_F_contig995.17645.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length249
Homology
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Match: D8LAU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU5_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 6.480e-142
Identity = 193/244 (79.10%), Postives = 217/244 (88.93%), Query Frame = 0
Query:    2 SQASKEKQDFLDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGKDTQRSEGLNQLHGAISTARVIFRMQGTAEAVWELKHVSGAEGWDSPVIRVLARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCIIDMYMNVIKGKELKKREEGVRRKLRDCQESELSPLRQKLSEIAALRRHIALQQWRMVFYLPNAVHWAFYKPPAHPLLVAIFGLAEAAVGIVQAFPP 245
            S  S+  +DFLDR VTFVAGTYRNDKCIKLLGYS ST++QIIRYRNGGKDT+RSEGLNQL+GA+STARVIFRMQGTAEAVWELKH+SGA+GWD   IR LARLQA+TN+FYHP+E+VALA  +APKL  VD+AWWWARSDWAWLAFCIIDMYMNV+KG+EL++REEGVRRKLRDC ESE + LRQ LS+IAA +R +ALQQ RMVFYLPNAVHWAF KPP HPL+VA  GL EAAVG VQAFPP
Sbjct:    3 SSQSEGAKDFLDRFVTFVAGTYRNDKCIKLLGYSLSTIAQIIRYRNGGKDTRRSEGLNQLYGALSTARVIFRMQGTAEAVWELKHLSGADGWDDVRIRPLARLQALTNVFYHPMEEVALAGGIAPKLFPVDQAWWWARSDWAWLAFCIIDMYMNVLKGRELRRREEGVRRKLRDCAESETAGLRQALSQIAASKRQVALQQLRMVFYLPNAVHWAFIKPPVHPLVVAALGLGEAAVGAVQAFPP 246          
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Match: A0A835YVI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI8_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.640e-51
Identity = 89/242 (36.78%), Postives = 143/242 (59.09%), Query Frame = 0
Query:    4 ASKEKQDFLDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGKDTQRSEGLNQLHGAISTARVIFRMQGTAEAVWELKHVSGAEGWDSPVIRVLARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCIIDMYMNVIKGKELKKREEGVRRKLRDCQESELSPLRQK-LSEIAALRRHIALQQWRMVFYLPNAVHWAFYKPPAHPLLVAIFGLAEAAVGIVQAFP 244
            + K  +  LD+ V + +  + +DK +K  GY+ S+++ ++R  NGGK T  +EGL++L+G +   R + R  GT +A+  +++ S    W    IR L + QA T + YHP+E V   A + PKLV ++  WW+A++ + W+A+ + D+Y++++K KELK+ +     +L    + E     Q  ++   A RR + LQ WR +FYLPNA+HW+F KP      VA  GLAEA VG+ Q FP
Sbjct:    3 SQKGGRTLLDKYVGYTSAYFYHDKVLKTGGYTCSSLAAVLRVLNGGKSTTLTEGLDKLYGEVGMTRCLTRFIGTTDALEAIRNDSWVGDWKDRRIRNLVKFQAWTMLIYHPMEHVGYLAYIVPKLVPLNGDWWFAKACYWWVAYVVADLYISLLKFKELKRSDAAAALQLEQAADDEARAAAQAAVAANQAKRRIVRLQVWRAIFYLPNAIHWSFVKPVLPKGAVAALGLAEAIVGLKQTFP 244          
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Match: A0A7S0M254_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M254_9CRYP)

HSP 1 Score: 57.0 bits (136), Expect = 1.560e-6
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 0
Query:    1 MSQASKEKQDFLDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGKDTQRSEGLNQLHGAISTARVIFRMQGTAEAVW-ELKHV---SGAEGWDSPVIRVLARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCIIDMYMNVIK 158
            MS  +      L ++V F +  +  DK +K   Y+F   S       G K    +EGL QL   +S  R+  R+ G    V  EL+++   S   GW+   I+     Q+VT + Y+PLE++A A  +AP+L  V+       S   W+ + +ID+Y   ++
Sbjct:    1 MSSVNSAPVQLLMQVVDFHSSVFGWDKTMKNFCYAFGLASCAASQIYGPKSAL-AEGLKQLGSNLSMYRMCTRIGGGPFGVPPELENMINHSWYGGWEDKRIKWCVWWQSVTMLGYYPLENLAWAGYIAPRLFPVNADKLCQASCVFWVLWILIDIYATRLR 161          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig995.17645.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LAU5_ECTSI6.480e-14279.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVI8_9STRA1.640e-5136.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0M254_9CRYP1.560e-629.01Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008733Peroxisomal biogenesis factor 11PFAMPF05648PEX11coord: 12..242
e-value: 7.1E-18
score: 64.9
NoneNo IPR availablePANTHERPTHR12652PEROXISOMAL BIOGENESIS FACTOR 11coord: 2..242
NoneNo IPR availablePANTHERPTHR12652:SF25coord: 2..242

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig995contigS-latissima_F_contig995:34555..43157 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig995.17645.1mRNA_S-latissima_F_contig995.17645.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig995 34534..43326 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig995.17645.1 ID=prot_S-latissima_F_contig995.17645.1|Name=mRNA_S-latissima_F_contig995.17645.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=249bp
MSQASKEKQDFLDRLVTFVAGTYRNDKCIKLLGYSFSTVSQIIRYRNGGK
DTQRSEGLNQLHGAISTARVIFRMQGTAEAVWELKHVSGAEGWDSPVIRV
LARLQAVTNIFYHPLEDVALAASVAPKLVRVDEAWWWARSDWAWLAFCII
DMYMNVIKGKELKKREEGVRRKLRDCQESELSPLRQKLSEIAALRRHIAL
QQWRMVFYLPNAVHWAFYKPPAHPLLVAIFGLAEAAVGIVQAFPPPES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008733PEX11