mRNA_S-latissima_F_contig1079.658.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Match: A0A6H5L6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE) HSP 1 Score: 321 bits (823), Expect = 1.890e-87 Identity = 490/1318 (37.18%), Postives = 587/1318 (44.54%), Query Frame = 1
Query: 1 FHCLFFSGECTITLWAFSAGAAXXXXXXXXQCRDDCPDSPAGEGTSMELVRERPAWAGDLRAMGGLTAGDGFIR-YGQSERRVQLNARVFGGGGDDGCVAGGG-----QDLLAVGTAMGAVLLLKV-------------VTSVAPCG--DSGGXXXXXXXXXXXXXXGAVFGVAGAAVEVLPFRRVLVSDHNPVSMLSFVFPREADGSGTGNGDDNREDNEAFSCLQPALAVVKGSYVTLFPLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAITAWPTTPAGITWAAHDHNISGVSTVPFPGPLSNSASKSRPPSXXXXXXXXXXXXXXXXPKPVPRPAGDNASPYGASRGG------------GLGGRG---------GVKXXXXXXXXXXXXXXXXXXXGVRGGRSEYRTVIYTCSMDGYCKEWEV--TVGEGGDTAGSG----PGARLRKTVGGGTWV-QSAACRNPPSLLGCCASPNGVMVASLEFLRPERSSRKALEHLARKGTHCRILVTPMVPAAAERAATLEGGQDSIWEFPRAPGALSTDWAWYLRAAALADAAVHSTRAGVISFSLVPTLRKALDAAIASAATQAASGGGSAAPSS-PRFAAPTAVSASISRPSSRGXXXXXXXXCVGGGTGGISSGSGVSSRMSKSGGTEPTPLLWNLLRLQHLLLATAASVAGYHASVRAVRQVGPDESDSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDNDNPETGGKGRAAAAXXXXXXXXXXXXGSEGREPAXXXXXXXXXXXXXSTPLPGKPTPLSSPASVSEARH--SAMTPPVDGKANNHSSDAPTPEKGKRAQQK--------------ERVHRLKTVADETSAA---------ASASRTRLVLMRAWEKHSAP-----------SPAXXXXXXXXXXXXXXXXXXXXXXXLQSDGGDRANGSGGDIGGGSGVLGAGDASXXXXXXXXXXXXXXXXXXERCLREACLLARARASASVGM------GFLAGPLATPPIDVPRKADVERAVL-----------RRQHG----DHNGXXXXXXXXXXXXXXXXXXXXXXISSEK-CGLCGAQIV--------------------------GFFSEGQVEGGSGXXXXXXXXXRGPXXXXXXAT-ARGAAGLGTPP---------------ELPGWAVCRLGHRLRRCMDSLLPSLVAEYRRCEVCRSVMEIPPSSDSGCDGGXXXXXXXXXXGCGLPQERCVCVFCNVLLASGSFAVCW 3504
F L +G+ +TLW FS+ D+ + G G S+ L+RERPAWAGDLR MG + GDG +R V GG +G A +D LA+G + GAVL+L V V S A D+GG G AAV +P RRV VSD +PV+ L+FV PR A LAV KG+ V+LFPLVT XXXX A T PA +TW AHDHN++G+STVPF P+S++AS P XXXXXXXXXXXXXXXXP P G+ +GG G G G + XXXXXXXXXXXXXXX GGR+ ++YTCSMDG C+EWEV V GGD G G ARLRKTV T + + +NPP LLGC ASPNGV+VASLEF RPERS+RKA+++ ARKGTHCR+++TPM+P AAERAAT+ GG+DS W FP + G L TDWAWY+RAA L DA VHSTR + FSL+PT+R AL+ AI AA A G + A S PR T P LLW+LLRL H+ LATAASVAG A V P +D+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ + + GKG XXXXXX + R+ A T PG P S PP + + P P + +R + + +++ R K+ AD SAA ASA+R+RL LMRAWE+ P +PA XXXXXXXX XXXXXXXXX ERCLR AC LA AR+ +++G GFLAGPLATP ID+P + DV A+L R +HG G + E+ C LCGA I+ G S + G G XXXXXXX XX + G T ELPGW VCR GHR RR MD+L P YRRCEVCR V + PS DG P + CVFCNV+LAS AV W
Sbjct: 236 FTLLAMAGDFVVTLWTFSSETTPIG--------DEEGEEQEG-GRSLGLLRERPAWAGDLRRMG-TSGGDGNVRALAWCHESVSTPPS---GGYHNGAAASFSPPRPTRDFLAIGMSAGAVLVLAVDIGTNADAVAAAAVESPASLAHVDAGGGGSSAPARVRS-------GGITAAVTAVPLRRVCVSDGSPVTFLAFVVPRSA------------------------LAVAKGAMVSLFPLVTATASNIHNQQDNQHPATEPTTTARVTAAXXXXEGLAASGPAREATPSLPRRF--AATPDGRQPAAVTWRAHDHNVTGISTVPFAAPMSSTAS----PPXXXXXXXXXXXXXXXXPGAPPTAVGNGKHRQDGEKGGXXXXXXXXXXXXGDAGAGRDXXXXXXXAERARVXXXXXXXXXXXXXXXCRRSGGRAT--ALVYTCSMDGSCREWEVEVAVSPGGDRGGGGREGAAKARLRKTVSRMTKRGEQSPLKNPPPLLGCSASPNGVLVASLEFCRPERSTRKAVQNTARKGTHCRVVLTPMMPPAAERAATVTGGRDSSWNFPLSSGVLLTDWAWYIRAAILGDAVVHSTREDITPFSLIPTVRNALEDAILKAAEAARQGAPTGATRSRPRLKTTTEAXXXXXXXXXXNDVLPKASNXXXXXXXXXXXXXXXXXXXXXXSSRTPA-LLWDLLRLHHVFLATAASVAGCQADVHV-----PPVADNGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSEISGVGSRD----GKGVEXXXXXXXXXTAGSLDAASSRKAAP-------------TRKPGMPPXXXXXXXXXXXXXXSSKQVPPPKKNTTRFAGNCPAPSRPRRYRNESELDKKSAASMATVKKIKRRKSAADRVSAAEMAARASTAASAARSRLALMRAWEQVRLPPGDVTGGVGRATPAKVPKDVVSATPAADNXXXXXXXXXXX------------------XXXXXXXXXXXXXXXXXAVAKQRAAAERCLRAACGLASARSRSALGRTGGTAGGFLAGPLATPVIDLPLEQDVRAALLEPKGSGKMLDNRVRHGRDDVSRGGVEGVAGQAAAPVLIASSAGPHSSAGEETCLLCGAPILSDTAAAXXXXXXXXXXXXGADDPRARGTISIVSIPAGVGASXXXXXXXXXXXXDGKVGSRTAGEENASTSXXXXXXXXXXIVTGALELPGWVVCRRGHRFRRSMDTLAPIPGVGYRRCEVCRCVRALSPSCRDEGDGLGVGGSGGSTAELASPPDTSTCVFCNVMLASCGSAVSW 1460
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Match: D7FKE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE4_ECTSI) HSP 1 Score: 256 bits (653), Expect = 6.740e-70 Identity = 237/591 (40.10%), Postives = 292/591 (49.41%), Query Frame = 1
Query: 1 FHCLFFSGECTITLWAFSAGAAXXXXXXXXQCRDDCPDSPAGEGTSMELVRERPAWAGDLRAMGGLTAGDGFIRYGQSERRVQLNARVFGGGGDDGCVAGGG------QDLLAVGTAMGAVLLLKV-------------VTSVAPCG--DSGGXXXXXXXXXXXXXXGAVFGVAGAAVEVLPFRRVLVSDHNPVSMLSFVFPREADGSGTGNGDDNREDNEAFSCLQPALAVVKGSYVTLFPLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAITAWPTTPAGITWAAHDHNISGVSTVPFPGPLSNSASKSRPPSXXXXXXXXXXXXXXXXPKPVP-------RPAGD-------------NASPYGASRGGGLGGRGGVKXXXXXXXXXXXXXXXXXXXGVRGGRSEYRTVIYTCSMDGYCKEWEVTVG---EGGDTAGSGPGA---RLRKTVGGGTWV-QSAACRNPPSLLGCCASPNGVMVASLEFLRPERSSRKALEHLARKGTHCRILVTPMVPAAAERAATLEGGQDSIWEFPRAPGALSTDWAWYLRAAALADAAV 1629
F L +G+ ITLW FS+ + ++ + G G S+ LVRERPAWAGDLR+MG GDG +R + + GG D A +D LA+G + G VL+L V V S A D+GG G AAV +P RRV VSD +PV+ L+FV PR G G+ + + S + ALAV KG+ V+LFPLVT A T PA + W AHDHN++G+STVPF P+SN+AS PS XXXXXXXXX P R G+ + GA R G G + XXXXXXXXXXXXXXX GGR+ V+YTCSMDG C+EWEV V EG + GA RLRKTV T Q + +NPP LLGC ASPNGV+VASLEF RPERS+RKA+++ ARKGTHCR+++TPM+P AAERAAT+ GG+DS W FP + G L TDWAWY+RAA L DAAV
Sbjct: 28 FTLLAMAGDFVITLWTFSSETK--------RTGEEQGEEEEG-GRSLGLVRERPAWAGDLRSMG-TRGGDGNVR---ALAWCHESVSASPSGGYDNVTAASSSPPRPTRDFLAIGMSAGTVLVLAVDIGTDADAMAAAAVESPASLAHVDAGGGGSSAPARVRS-------GGITAAVTAVPLRRVCVSDGSPVTFLAFVVPRSGRW-GAGSSEQGDSGDSPPSSPRAALAVSKGAMVSLFPLVTATASNILDQQDNQLPATGPTATARATAGTTTAEGLAASGPAREATPSPTRRF--AATPDGRQPAAVAWRAHDHNVTGISTVPFAAPVSNTAST---PSLAGTSXXXXXXXXXGQAAPTTAVGNGKHRQGGEGXXXXXXXSDVATSVGDAGAGRDGSSRGXXXXRARVXXXXXXXXXXXXXXXCRRSGGRAT--AVMYTCSMDGSCREWEVEVAVSPEGXXXXXAREGAAKARLRKTVSRLTKRGQQSPLKNPPPLLGCSASPNGVLVASLEFCRPERSTRKAVQNTARKGTHCRVVLTPMIPPAAERAATVTGGRDSSWNFPLSSGVLLTDWAWYIRAAILGDAAV 590
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Match: D7FKE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE5_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 7.580e-16 Identity = 93/291 (31.96%), Postives = 111/291 (38.14%), Query Frame = 1
Query: 2833 ERCLREACLLARARASASVGM------GFLAGPLATPPIDVPRKADVERAVLRRQ-------HGDHNGXXXXXXXXXXXXXXXXXXXXXXISS---------EKCGLCGAQIVGFFSEGQVEGGSGXXXXXXXXXRGPXXXXXXATARGAAGLGTPP---------------------------------------------ELPGWAVCRLGHRLRRCMDSLLPSLVAEYRRCEVCRSVMEIPPSSDSGCDGGXXXXXXXXXXGCGLPQERCVCVFCNVLLASGSFAVCW 3504
ERCLR AC LA AR+ +++G GFLAGPLATP ID+P + DV A+L + +G +G SS E C LCGA I+ + XXXXXX P + AG+G P ELPGW VCR GHR RR MD+L P YRRCEVCR V + S DG P + CVFCNV+LAS AV W
Sbjct: 214 ERCLRAACGLASARSRSALGRTGGTAGGFLAGPLATPVIDLPLERDVRAALLEPEGSGKMHVNGVRHGRDDVSRGGVQGVAGQAATPALFSSSAGPHSSAGEETCLLCGAPILSDAAXXXXXXXXXXXXXXXADD--PRARGTSSIVSTPAGVGASPTXXXXXXXXXXXXXKVGSRTAGEENVSTSXXXXXXXEDRVVAGALELPGWVVCRRGHRFRRSMDTLAPIPGVGYRRCEVCRCVRSLSRSCRDEEDGLGVGGSGGSSAELASPPDGSTCVFCNVMLASSGSAVSW 502 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1079.658.1 >prot_S-latissima_F_contig1079.658.1 ID=prot_S-latissima_F_contig1079.658.1|Name=mRNA_S-latissima_F_contig1079.658.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=1171bp FHCLFFSGECTITLWAFSAGAAAAAAAAAAQCRDDCPDSPAGEGTSMELVback to top mRNA from alignment at S-latissima_F_contig1079:154693..163070- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1079.658.1 ID=mRNA_S-latissima_F_contig1079.658.1|Name=mRNA_S-latissima_F_contig1079.658.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=8378bp|location=Sequence derived from alignment at S-latissima_F_contig1079:154693..163070- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1079:154693..163070- >mRNA_S-latissima_F_contig1079.658.1 ID=mRNA_S-latissima_F_contig1079.658.1|Name=mRNA_S-latissima_F_contig1079.658.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=7026bp|location=Sequence derived from alignment at S-latissima_F_contig1079:154693..163070- (Saccharina latissima SLPER63f female)back to top |