prot_S-latissima_F_contig1079.658.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig1079.658.1
Unique Nameprot_S-latissima_F_contig1079.658.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length1171
Homology
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Match: A0A6H5L6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 1.890e-87
Identity = 490/1318 (37.18%), Postives = 587/1318 (44.54%), Query Frame = 0
Query:    1 FHCLFFSGECTITLWAFSAGAAXXXXXXXXQCRDDCPDSPAGEGTSMELVRERPAWAGDLRAMGGLTAGDGFIR-YGQSERRVQLNARVFGGGGDDGCVAGGG-----QDLLAVGTAMGAVLLLKV-------------VTSVAPCG--DSGGXXXXXXXXXXXXXXGAVFGVAGAAVEVLPFRRVLVSDHNPVSMLSFVFPREADGSGTGNGDDNREDNEAFSCLQPALAVVKGSYVTLFPLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAITAWPTTPAGITWAAHDHNISGVSTVPFPGPLSNSASKSRPPSXXXXXXXXXXXXXXXXPKPVPRPAGDNASPYGASRGG------------GLGGRG---------GVKXXXXXXXXXXXXXXXXXXXGVRGGRSEYRTVIYTCSMDGYCKEWEV--TVGEGGDTAGSG----PGARLRKTVGGGTWV-QSAACRNPPSLLGCCASPNGVMVASLEFLRPERSSRKALEHLARKGTHCRILVTPMVPAAAERAATLEGGQDSIWEFPRAPGALSTDWAWYLRAAALADAAVHSTRAGVISFSLVPTLRKALDAAIASAATQAASGGGSAAPSS-PRFAAPTAVSASISRPSSRGXXXXXXXXCVGGGTGGISSGSGVSSRMSKSGGTEPTPLLWNLLRLQHLLLATAASVAGYHASVRAVRQVGPDESDSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDNDNPETGGKGRAAAAXXXXXXXXXXXXGSEGREPAXXXXXXXXXXXXXSTPLPGKPTPLSSPASVSEARH--SAMTPPVDGKANNHSSDAPTPEKGKRAQQK--------------ERVHRLKTVADETSAA---------ASASRTRLVLMRAWEKHSAP-----------SPAXXXXXXXXXXXXXXXXXXXXXXXLQSDGGDRANGSGGDIGGGSGVLGAGDASXXXXXXXXXXXXXXXXXXERCLREACLLARARASASVGM------GFLAGPLATPPIDVPRKADVERAVL-----------RRQHG----DHNGXXXXXXXXXXXXXXXXXXXXXXISSEK-CGLCGAQIV--------------------------GFFSEGQVEGGSGXXXXXXXXXRGPXXXXXXAT-ARGAAGLGTPP---------------ELPGWAVCRLGHRLRRCMDSLLPSLVAEYRRCEVCRSVMEIPPSSDSGCDGGXXXXXXXXXXGCGLPQERCVCVFCNVLLASGSFAVCW 1168
            F  L  +G+  +TLW FS+              D+  +   G G S+ L+RERPAWAGDLR MG  + GDG +R        V        GG  +G  A        +D LA+G + GAVL+L V             V S A     D+GG                  G   AAV  +P RRV VSD +PV+ L+FV PR A                        LAV KG+ V+LFPLVT                            XXXX                      A T     PA +TW AHDHN++G+STVPF  P+S++AS    P XXXXXXXXXXXXXXXXP   P   G+        +GG            G  G G           +   XXXXXXXXXXXXXXX    GGR+    ++YTCSMDG C+EWEV   V  GGD  G G      ARLRKTV   T   + +  +NPP LLGC ASPNGV+VASLEF RPERS+RKA+++ ARKGTHCR+++TPM+P AAERAAT+ GG+DS W FP + G L TDWAWY+RAA L DA VHSTR  +  FSL+PT+R AL+ AI  AA  A  G  + A  S PR    T                                               P  LLW+LLRL H+ LATAASVAG  A V       P  +D+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      G+ + +    GKG     XXXXXX       +  R+ A              T  PG P                S   PP        + + P P + +R + +              +++ R K+ AD  SAA         ASA+R+RL LMRAWE+   P           +PA               XXXXXXXX                             XXXXXXXXX         ERCLR AC LA AR+ +++G       GFLAGPLATP ID+P + DV  A+L           R +HG       G                       + E+ C LCGA I+                          G  S   +  G G  XXXXXXX   XX     +   G     T                 ELPGW VCR GHR RR MD+L P     YRRCEVCR V  + PS     DG               P +   CVFCNV+LAS   AV W
Sbjct:  236 FTLLAMAGDFVVTLWTFSSETTPIG--------DEEGEEQEG-GRSLGLLRERPAWAGDLRRMG-TSGGDGNVRALAWCHESVSTPPS---GGYHNGAAASFSPPRPTRDFLAIGMSAGAVLVLAVDIGTNADAVAAAAVESPASLAHVDAGGGGSSAPARVRS-------GGITAAVTAVPLRRVCVSDGSPVTFLAFVVPRSA------------------------LAVAKGAMVSLFPLVTATASNIHNQQDNQHPATEPTTTARVTAAXXXXEGLAASGPAREATPSLPRRF--AATPDGRQPAAVTWRAHDHNVTGISTVPFAAPMSSTAS----PPXXXXXXXXXXXXXXXXPGAPPTAVGNGKHRQDGEKGGXXXXXXXXXXXXGDAGAGRDXXXXXXXAERARVXXXXXXXXXXXXXXXCRRSGGRAT--ALVYTCSMDGSCREWEVEVAVSPGGDRGGGGREGAAKARLRKTVSRMTKRGEQSPLKNPPPLLGCSASPNGVLVASLEFCRPERSTRKAVQNTARKGTHCRVVLTPMMPPAAERAATVTGGRDSSWNFPLSSGVLLTDWAWYIRAAILGDAVVHSTREDITPFSLIPTVRNALEDAILKAAEAARQGAPTGATRSRPRLKTTTEAXXXXXXXXXXNDVLPKASNXXXXXXXXXXXXXXXXXXXXXXSSRTPA-LLWDLLRLHHVFLATAASVAGCQADVHV-----PPVADNGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSEISGVGSRD----GKGVEXXXXXXXXXTAGSLDAASSRKAAP-------------TRKPGMPPXXXXXXXXXXXXXXSSKQVPPPKKNTTRFAGNCPAPSRPRRYRNESELDKKSAASMATVKKIKRRKSAADRVSAAEMAARASTAASAARSRLALMRAWEQVRLPPGDVTGGVGRATPAKVPKDVVSATPAADNXXXXXXXXXXX------------------XXXXXXXXXXXXXXXXXAVAKQRAAAERCLRAACGLASARSRSALGRTGGTAGGFLAGPLATPVIDLPLEQDVRAALLEPKGSGKMLDNRVRHGRDDVSRGGVEGVAGQAAAPVLIASSAGPHSSAGEETCLLCGAPILSDTAAAXXXXXXXXXXXXGADDPRARGTISIVSIPAGVGASXXXXXXXXXXXXDGKVGSRTAGEENASTSXXXXXXXXXXIVTGALELPGWVVCRRGHRFRRSMDTLAPIPGVGYRRCEVCRCVRALSPSCRDEGDGLGVGGSGGSTAELASPPDTSTCVFCNVMLASCGSAVSW 1460          
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Match: D7FKE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE4_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 6.740e-70
Identity = 237/591 (40.10%), Postives = 292/591 (49.41%), Query Frame = 0
Query:    1 FHCLFFSGECTITLWAFSAGAAXXXXXXXXQCRDDCPDSPAGEGTSMELVRERPAWAGDLRAMGGLTAGDGFIRYGQSERRVQLNARVFGGGGDDGCVAGGG------QDLLAVGTAMGAVLLLKV-------------VTSVAPCG--DSGGXXXXXXXXXXXXXXGAVFGVAGAAVEVLPFRRVLVSDHNPVSMLSFVFPREADGSGTGNGDDNREDNEAFSCLQPALAVVKGSYVTLFPLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAITAWPTTPAGITWAAHDHNISGVSTVPFPGPLSNSASKSRPPSXXXXXXXXXXXXXXXXPKPVP-------RPAGD-------------NASPYGASRGGGLGGRGGVKXXXXXXXXXXXXXXXXXXXGVRGGRSEYRTVIYTCSMDGYCKEWEVTVG---EGGDTAGSGPGA---RLRKTVGGGTWV-QSAACRNPPSLLGCCASPNGVMVASLEFLRPERSSRKALEHLARKGTHCRILVTPMVPAAAERAATLEGGQDSIWEFPRAPGALSTDWAWYLRAAALADAAV 543
            F  L  +G+  ITLW FS+           +  ++  +   G G S+ LVRERPAWAGDLR+MG    GDG +R   +      +      GG D   A         +D LA+G + G VL+L V             V S A     D+GG                  G   AAV  +P RRV VSD +PV+ L+FV PR     G G+ +     +   S  + ALAV KG+ V+LFPLVT                                                      A T     PA + W AHDHN++G+STVPF  P+SN+AS    PS     XXXXXXXXX    P         R  G+             +    GA R G   G    +   XXXXXXXXXXXXXXX    GGR+    V+YTCSMDG C+EWEV V    EG     +  GA   RLRKTV   T   Q +  +NPP LLGC ASPNGV+VASLEF RPERS+RKA+++ ARKGTHCR+++TPM+P AAERAAT+ GG+DS W FP + G L TDWAWY+RAA L DAAV
Sbjct:   28 FTLLAMAGDFVITLWTFSSETK--------RTGEEQGEEEEG-GRSLGLVRERPAWAGDLRSMG-TRGGDGNVR---ALAWCHESVSASPSGGYDNVTAASSSPPRPTRDFLAIGMSAGTVLVLAVDIGTDADAMAAAAVESPASLAHVDAGGGGSSAPARVRS-------GGITAAVTAVPLRRVCVSDGSPVTFLAFVVPRSGRW-GAGSSEQGDSGDSPPSSPRAALAVSKGAMVSLFPLVTATASNILDQQDNQLPATGPTATARATAGTTTAEGLAASGPAREATPSPTRRF--AATPDGRQPAAVAWRAHDHNVTGISTVPFAAPVSNTAST---PSLAGTSXXXXXXXXXGQAAPTTAVGNGKHRQGGEGXXXXXXXSDVATSVGDAGAGRDGSSRGXXXXRARVXXXXXXXXXXXXXXXCRRSGGRAT--AVMYTCSMDGSCREWEVEVAVSPEGXXXXXAREGAAKARLRKTVSRLTKRGQQSPLKNPPPLLGCSASPNGVLVASLEFCRPERSTRKAVQNTARKGTHCRVVLTPMIPPAAERAATVTGGRDSSWNFPLSSGVLLTDWAWYIRAAILGDAAV 590          
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Match: D7FKE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.580e-16
Identity = 93/291 (31.96%), Postives = 111/291 (38.14%), Query Frame = 0
Query:  945 ERCLREACLLARARASASVGM------GFLAGPLATPPIDVPRKADVERAVLRRQ-------HGDHNGXXXXXXXXXXXXXXXXXXXXXXISS---------EKCGLCGAQIVGFFSEGQVEGGSGXXXXXXXXXRGPXXXXXXATARGAAGLGTPP---------------------------------------------ELPGWAVCRLGHRLRRCMDSLLPSLVAEYRRCEVCRSVMEIPPSSDSGCDGGXXXXXXXXXXGCGLPQERCVCVFCNVLLASGSFAVCW 1168
            ERCLR AC LA AR+ +++G       GFLAGPLATP ID+P + DV  A+L  +       +G  +G                       SS         E C LCGA I+   +         XXXXXX     P      +     AG+G  P                                             ELPGW VCR GHR RR MD+L P     YRRCEVCR V  +  S     DG               P +   CVFCNV+LAS   AV W
Sbjct:  214 ERCLRAACGLASARSRSALGRTGGTAGGFLAGPLATPVIDLPLERDVRAALLEPEGSGKMHVNGVRHGRDDVSRGGVQGVAGQAATPALFSSSAGPHSSAGEETCLLCGAPILSDAAXXXXXXXXXXXXXXXADD--PRARGTSSIVSTPAGVGASPTXXXXXXXXXXXXXKVGSRTAGEENVSTSXXXXXXXEDRVVAGALELPGWVVCRRGHRFRRSMDTLAPIPGVGYRRCEVCRCVRSLSRSCRDEEDGLGVGGSGGSSAELASPPDGSTCVFCNVMLASSGSAVSW 502          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1079.658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6Y7_9PHAE1.890e-8737.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKE4_ECTSI6.740e-7040.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKE5_ECTSI7.580e-1631.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..1170
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.573

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1079contigS-latissima_F_contig1079:154693..163070 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1079.658.1mRNA_S-latissima_F_contig1079.658.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig1079 154693..163070 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig1079.658.1 ID=prot_S-latissima_F_contig1079.658.1|Name=mRNA_S-latissima_F_contig1079.658.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=1171bp
FHCLFFSGECTITLWAFSAGAAAAAAAAAAQCRDDCPDSPAGEGTSMELV
RERPAWAGDLRAMGGLTAGDGFIRYGQSERRVQLNARVFGGGGDDGCVAG
GGQDLLAVGTAMGAVLLLKVVTSVAPCGDSGGGGGGGGGGGSGRGRGAVF
GVAGAAVEVLPFRRVLVSDHNPVSMLSFVFPREADGSGTGNGDDNREDNE
AFSCLQPALAVVKGSYVTLFPLVTTTTPRNTTNTTTTTTTTPPNKTQRLS
SGSKTAAGTSGSAATTAATTTATTAAAAAITAWPTTPAGITWAAHDHNIS
GVSTVPFPGPLSNSASKSRPPSNSSPKSNSNASSTSSTPKPVPRPAGDNA
SPYGASRGGGLGGRGGVKRRREEDEKGGGGDTGRGGGGVRGGRSEYRTVI
YTCSMDGYCKEWEVTVGEGGDTAGSGPGARLRKTVGGGTWVQSAACRNPP
SLLGCCASPNGVMVASLEFLRPERSSRKALEHLARKGTHCRILVTPMVPA
AAERAATLEGGQDSIWEFPRAPGALSTDWAWYLRAAALADAAVHSTRAGV
ISFSLVPTLRKALDAAIASAATQAASGGGSAAPSSPRFAAPTAVSASISR
PSSRGRGSSRGRGCVGGGTGGISSGSGVSSRMSKSGGTEPTPLLWNLLRL
QHLLLATAASVAGYHASVRAVRQVGPDESDSDGDSEESDDGSGDGSGDRS
GNDKGKGNGNGTGDSSGTGNNSGNSSGNDSGNGIDNDNPETGGKGRAAAA
PKAKGSGKEAAAGSEGREPAPPPPLPPPPPPPPSTPLPGKPTPLSSPASV
SEARHSAMTPPVDGKANNHSSDAPTPEKGKRAQQKERVHRLKTVADETSA
AASASRTRLVLMRAWEKHSAPSPAAARGGATPTKPPPRPSPVPAPSPLQS
DGGDRANGSGGDIGGGSGVLGAGDASSAAAAAAAAAAAATAAARERCLRE
ACLLARARASASVGMGFLAGPLATPPIDVPRKADVERAVLRRQHGDHNGG
GGSSARAVSPSASSSSSSSSSISSEKCGLCGAQIVGFFSEGQVEGGSGGG
VSGGAAGRGPGGGEGGATARGAAGLGTPPELPGWAVCRLGHRLRRCMDSL
LPSLVAEYRRCEVCRSVMEIPPSSDSGCDGGGGSGGGGQGGGCGLPQERC
VCVFCNVLLASGSFAVCWLG*
back to top