mRNA_S-latissima_F_contig1076.641.1 (mRNA) Saccharina latissima SLPER63f female
|
Overview
Homology
BLAST of mRNA_S-latissima_F_contig1076.641.1 vs. uniprot
Match: A0A6H5L2Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Z5_9PHAE) HSP 1 Score: 551 bits (1419), Expect = 1.620e-174 Identity = 278/422 (65.88%), Postives = 330/422 (78.20%), Query Frame = 2
Query: 2 MKGGKMGKFAYKKRLREGLDAAYQN----RGMLFCMQEAILYMRGRDPICPAYRPRWWPH-PSTSPQLRAPLVGAWFEGRRIGAASLAPWQMRRNLFGRDVTAAAGAAAVAAAGEESRVRADGTRVPAMMVLPLEAVRRRLPEFDEGLAVPVSRIPKTAAVVWISHCWMGTPSRPDDQANSKAKAIYEGLRSLDRDEVYVWIDASCLPNNV------RPAREEEAVSAASKGLAVAEAVAAADAAEVQTEGQALEELGHRARTIRALPLYLLCCDFFLSLDELEPVYMCSPWTRLERAALREAITLTSGGGSTKTTRAGHPRMLGIKRDETVSIAGTSKRGTAMITHHNNLAALPKLELIPPFSQGSKAGASGMWAADVPAIRRSFELLQGLSMARANLARYPCMDVPRLAPDEELSDQPVL 1234
+KGGKM KF Y+KRLREGLDAAYQ+ RGMLFC+QEA+LY+RG+DPICP Y PRWWP P+TSPQ+RAPLVG+WFEGRR+GAASL PWQMR NLFG A G AG SRVRADGTRVP MMVLPL AV++RLP+FDEGL VPVS IP+ A VVW+SH W GTP+RPDDQ N+KAKAIYEGL +LDR +VYVW+D SCLP +V R + AV +G AVAEAVA + + QTE +ALEE+G RARTIRALPL+LLCCD+FLS+D+ EP+Y SPWTRLERAALRE +TLTSGGG+TKTTRAGHPRML + RDET S KR T +++H NNL+ LPKLE +PPF GSK+ ASG+WA+DVPA++RSF+LL GLS+ RA LARYP +D+PRL EE D P++
Sbjct: 1407 VKGGKMTKFPYQKRLREGLDAAYQSECGDRGMLFCLQEALLYVRGKDPICPGYSPRWWPSSPATSPQIRAPLVGSWFEGRRVGAASLLPWQMRHNLFGEGALADDGGTG---AGSPSRVRADGTRVPPMMVLPLSAVQKRLPDFDEGLTVPVSEIPRNAVVVWVSHYWGGTPARPDDQGNTKAKAIYEGLTNLDRGDVYVWVDVSCLPQSVQQPAGGRGGGGDAAVPTTPRGKAVAEAVAFSSSGRSQTEVEALEEVGQRARTIRALPLFLLCCDYFLSVDDREPIYTRSPWTRLERAALREVLTLTSGGGATKTTRAGHPRMLRMLRDETASFMDLPKRSTTVVSHLNNLSMLPKLEALPPFGPGSKSAASGIWASDVPAMQRSFQLLDGLSLMRAKLARYPAVDIPRLHLAEEGEDTPIV 1825
BLAST of mRNA_S-latissima_F_contig1076.641.1 vs. uniprot
Match: D7FQV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV9_ECTSI) HSP 1 Score: 531 bits (1367), Expect = 1.710e-168 Identity = 265/389 (68.12%), Postives = 313/389 (80.46%), Query Frame = 2
Query: 5 KGGKMGKFAYKKRLREGLDAAYQNRGMLFCMQEAILYMRGRDPICPAYRPRWWPH-PSTSPQLRAPLVGAWFEGRRIGAASLAPWQMRRNLFGRDVTAAAGAAAVAAAGEESRVRADGTRVPAMMVLPLEAVRRRLPEFDEGLAVPVSRIPKTAAVVWISHCWMGTPSRPDDQANSKAKAIYEGLRSLDRDEVYVWIDASCLPNNVR-PARE---EEAVSAASKGLAVAEAVAAADAAEVQTEGQALEELGHRARTIRALPLYLLCCDFFLSLDELEPVYMCSPWTRLERAALREAITLTSGGGSTKTTRAGHPRMLGIKRDETVSIAGTSKRGTAMITHHNNLAALPKLELIPPFSQGSKAGASGMWAADVPAIRRSFELLQGLSMAR 1156
KGGKM KF Y+KRLREGLDAAYQNRGMLFC+QEA+LY+RG+DPICP Y PRWWP P+TSPQ+RAPLVG+WFEGRR+GAASL PWQMR NLFG A G A AG SRVRADGTRVP MMVLPL AV++RLP+FDEGL VPVS IP+ A VVW+SH W GTP+RPDDQ N+KAKAIYEGL +LDR +VYVW+D SCLP + + PA + AV +G AVAEAVA + + QTE +ALEE+G RARTIRALPL+LLCCD+FLS+D+ EP+Y SPWTRLERAALRE +TLTSGGG+TKTTRAGHPRML + RDET S KR T +++H NNL+ LPKLE +PPF GSK+ ASG+WA+DVPA++RSF+LL GLS+ +
Sbjct: 1261 KGGKMTKFPYQKRLREGLDAAYQNRGMLFCLQEALLYVRGKDPICPGYSPRWWPSSPATSPQIRAPLVGSWFEGRRVGAASLLPWQMRHNLFGEGALANGGGAG---AGSPSRVRADGTRVPPMMVLPLSAVQKRLPDFDEGLTVPVSEIPRNAVVVWVSHYWGGTPARPDDQGNTKAKAIYEGLVNLDRGDVYVWVDVSCLPQSAQQPAGGGGGDAAVPTTPRGKAVAEAVAFSSSGRSQTEVEALEEVGQRARTIRALPLFLLCCDYFLSVDDREPIYTRSPWTRLERAALREVLTLTSGGGATKTTRAGHPRMLRMLRDETASFMDLPKRSTTVVSHMNNLSMLPKLEALPPFGPGSKSAASGIWASDVPAMQRSFQLLDGLSLGQ 1646 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1076.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1076.641.1 >prot_S-latissima_F_contig1076.641.1 ID=prot_S-latissima_F_contig1076.641.1|Name=mRNA_S-latissima_F_contig1076.641.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=448bp MKGGKMGKFAYKKRLREGLDAAYQNRGMLFCMQEAILYMRGRDPICPAYRback to top mRNA from alignment at S-latissima_F_contig1076:44182..49147+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1076.641.1 ID=mRNA_S-latissima_F_contig1076.641.1|Name=mRNA_S-latissima_F_contig1076.641.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=4966bp|location=Sequence derived from alignment at S-latissima_F_contig1076:44182..49147+ (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1076:44182..49147+ >mRNA_S-latissima_F_contig1076.641.1 ID=mRNA_S-latissima_F_contig1076.641.1|Name=mRNA_S-latissima_F_contig1076.641.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=2688bp|location=Sequence derived from alignment at S-latissima_F_contig1076:44182..49147+ (Saccharina latissima SLPER63f female)back to top |