mRNA_S-latissima_F_contig1034.310.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1034.310.1 vs. uniprot
Match: D7FHX5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX5_ECTSI) HSP 1 Score: 257 bits (657), Expect = 8.530e-71 Identity = 276/844 (32.70%), Postives = 362/844 (42.89%), Query Frame = 1
Query: 1 MHTAAGAGTLESMELLISAGLSPKTKDQGGRTPLHHAS---AHGSAECVSFLCVIAGSTLLSRDKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---ARTVGDETLWRALQDGDRRRHYALTNDGFLCSRYRSDERATRSGAGRAVDVGRIMAVWERFFENAA-------------LVAVGSSLAGGSDGYSDDDEGRQYEPRAAMKGLERENNKGVCGLNGNGATVEAVGTHRRLAPARKGWVCGGGGXXXXXKG-------GGEC-RADDRRHLQSQEIQGPEMPGALATPRTRFCAWDVV--TDDNALDHNNFPY---LPPNELTSQRAG---DLRTQF-VGDTNETPCS-DDADL--FQTPNGGSGDWMWPTDDDRQGEAQPSFE--LPPKRETMDTEEATF-GCFPAHQGWTTCWDAASGSLYYWDPESGSSTWDV----TTVPAGAN---FSSEVWDPQQEAFFTVDGSGASRWL--SQSSPA--SFAARSDELWKGASAVNVSAAVDAEDHYSSAISQAAVPRPSQELEMAVS------SSSE-----DNDSFHAALSEEDVYGSGESWAGEGNREGL-------DCCAVKQSHPNARKLDENQGRYN---DVCGFLYAEEQSSYHVST---SQAEVA-EYGWQP-NGDIDRAGNSV---------------GAQFSPKSVTSTPNMGFEENVDGVGFFDSNNG-----EGHEQIELEGTIGDISKPEVQGEEESAPNTIGAES---TLARLPKWLLWCA-QPHGAI-----PYYVNEVTGASSWMLPPEAVVSSGGWLRAWSEEHQAGFYANHWTGRVTWE 2208
MHTAAG G +ES+ELL+SAGLSP+T+D GRTPLHHA G+A CVSFLCV+AGST+LSRD+ A + A GD+ + AL DGDRRRH +N G L R+ E G VD RIMAVWERFFENAA + AVG+ GG G Q +G+ + G G + R + GGGG G GG C D R +S+ P LA + A D+ T L+ + + P + +R G DL Q VG++ T S DDADL F TP GG G + G + E P ++T EA + H W CWDAAS S+YYWD SG +W+ T + G F S VWDPQ+EAFFT+D GAS WL S SSP + GA S V + ++ S+ + S + +A+ SSSE D D+ + +++ D +W G+ GL D AV+Q PN + ++ N D+ GF A+E+ + S SQA E +P +GD G + A +S +T G DG FD+ + H+ + G V+G S + AE+ L RLP W+ WC+ PH PY+VNE TG SSW+LPP+AV S GWLRAWSEEHQA F+AN WTG VTW+
Sbjct: 1 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACLFPGSGAARCVSFLCVVAGSTVLSRDRTAGDTPLHFAVRARHGVCVEVLLSFAEGTSDILREANAKGETPLDLAAALSGDDGIVLALLDGDRRRHQPRSNGGKLSYLGRNVE-------GGTVDFQRIMAVWERFFENAARADLGGKKSSPDVISAVGTVGRGGYGGVE------QLVNTDETRGVGKLAEDGRWLGRGQPRATQTFDRDRHFVTTSE---LGGGGVGESQTGDRNGRWDGGWCVDTADSRTFRSRRTW---RPSGLADTSSIATAQDLARGTPPQHLERDGEDEHVDVAPLQSPHRRQGAKEDLGVQVGVGESGTTLLSSDDADLHLFHTPRGGDGVEAVRLPERIHGNIDSTLEPSTPASKDTNAAAEAAADNPYRRHGAWIACWDAASESIYYWDSNSGELSWNAPAPSTAIERGERLNGFPSPVWDPQREAFFTIDKDGASHWLVDSPSSPTWTTPVVEHRAATDGADGDIASLVVQDYTYDRTSASEESTTFSSWQQGLAIGAAAPEWSSSEVERDRDRDALNNTVNQVDEV---LAWDGQQLLAGLPYSFPMLDRQAVQQL-PNTCGDEYSKDDINGNDDLHGFFDAQEEHATRRSAPSFSQAGAGQECAVEPIDGDARADGRVLHLASGEEQQRCLRANAAAVVSESTQNTTTAGKGNQPDGNDVFDTEEQPSYLRDSHQDTDQNGLGA------VEGGTRSHDESAVAEAYDPALTRLPLWVQWCSYSPHDGDDTNNQPYFVNEETGESSWVLPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWD 815
BLAST of mRNA_S-latissima_F_contig1034.310.1 vs. uniprot
Match: A0A6H5KHS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS3_9PHAE) HSP 1 Score: 226 bits (577), Expect = 1.180e-59 Identity = 250/828 (30.19%), Postives = 341/828 (41.18%), Query Frame = 1
Query: 1 MHTAAGAGTLESMELLISAGLSPKTKDQGGRTPLHHAS---AHGSAECVSFLCVIAGSTLLSRDKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---ARTVGDETLWRALQDGDRRRHYALTNDGFLCSRYRSDERATRSGAGRAVDVGRIMAVWERFFENAALVAVGSSLAGGSDGYSDDDEGR-QYEPRAAMKGLERENNKGVCGLNGNG---ATVEAVGTHRRLAPARKGWVCGGGGXXXXXKG-------GGEC-RADDRRHLQSQEIQGPEMPGALAT-PRTRFCAWDVVTDDNALDHNNFPYLPPNELTSQRA-GDLRTQF-VGDTNETPCS-DDADL--FQTPNGGSGDWMWPTDDDRQGEAQPSFE--LPPKRETMDTEEATF-GCFPAHQGWTTCWDAASGSLYYWDPESGSSTWDV----TTVPAGANFS---SEVWDPQQEAFFTVDGSGASRWLSQSSPASFAARSDELWKGASAVNVSAAVDAEDHYSSAISQAAVP-RPSQELEMAVSSSSEDNDSFHAA------------------------LSEEDVYGSGESWAGEGNREGLDCCAVKQSHPNA---RKLDENQGRYNDVCGFLYAEEQSSYHVSTSQAEVAEYGWQP-----NGDIDRAGNSVGAQFSPKS---------------VTSTPNMGFEENVDGVGFFD-----SNNGEGHEQIELEGTIGDISKPEVQGEEESAPNTIGAESTLARLPKWLLWCA-QPHGA----IPYYVNEVTGASSWMLPPEAVVSSGGWLRAWSEEHQAGFYANHWTGRVTWE 2208
MHTAAG G +ES+ELL+SAGLSP+T+D GRTPLHHA +A CVSFLC +AGST+LSRD+ A + A GD+ + AL + D RR +N G L R+ E G VD RIMAVWERFFENAA +G + + GR +Y + + G +G A T R GGGG G GG C D R+L+S+ LA P + D +D +D P LP + Q DL Q VG++ T S DDADL F TP GG G + G + E PP + T EA + H W CWDAAS S+YYWD SG +W+ T + G + S +WDPQ+EAFFT+D GAS WL S W V AA+D D ++++ Q P R + E +S + + AA + E+ + + AG + + Q+ PN + +++ +D+ F A+E+ + ST + A G + +GD V P+ +T G DG+ D S+ + H+ + G +G + +E S + + RLP W+ WC+ PH + Y+VNE TG SSW+LPP+AV S GWL AWSEEHQA F+AN WTG VTW+
Sbjct: 37 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACLFPGSAAARCVSFLCAVAGSTVLSRDRTAGDTPLHFAVRARQGVCVEVLLSFAAGTNDILREANANGETPLDLAAALSGDDVILLALLEADGRRRQPRSNGGNLSYLGRNVE-------GDTVDFQRIMAVWERFFENAARADLGRKKSSPDVISAVGTVGRGEYGGVEQLVNTDETRAAGKLAKDGRWLGRGQPRATQTLDRDISFVTTSELGGGGGGESQSGDRNGRWDGGWCVDTADSRNLRSRSTSSVATARDLARGPPPQHLERDG--EDAHVDVA--PLLPVGPMRRQGVKDDLSVQVGVGESGTTLLSSDDADLHLFHTPRGGDGVEAVRLPERIHGNIDSTLEPSTPPIKATNAAAEAAADNPYRRHGTWIACWDAASESVYYWDSNSGELSWNAPGPSTAIERGNRLNGIPSPLWDPQREAFFTIDEDGASHWL-------VGYPSSPTWT-TPVVEHRAAMDGADGDTASLVQEYNPDRTTVSKESTTYTSWQQGSAVAAAAPEPSSSEVECDRDRGILGTTANQVEEDPAWDRQQPLAGFSHSLRMVDRQSIQTLPNTCGEKYTEDDVNGNDDLHEFFDAQEEHAARCSTPSSSHAGAGQECAVEPIDGDAGADNRVVHLASGPEQQRCLRANAAAVVSEYTQNTTTAGKGNQSDGIDLSDTDEQPSSGRDSHQDTDQNG-LGAVEGGTRFHDESSVVEAD--DLAMIRLPLWVQWCSYSPHDDDDTNLSYFVNEETGESSWVLPPDAVAESRGWLLAWSEEHQAHFFANQWTGNVTWD 842 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1034.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1034.310.1 >prot_S-latissima_F_contig1034.310.1 ID=prot_S-latissima_F_contig1034.310.1|Name=mRNA_S-latissima_F_contig1034.310.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=746bp MHTAAGAGTLESMELLISAGLSPKTKDQGGRTPLHHASAHGSAECVSFLCback to top mRNA from alignment at S-latissima_F_contig1034:112814..115253- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1034.310.1 ID=mRNA_S-latissima_F_contig1034.310.1|Name=mRNA_S-latissima_F_contig1034.310.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=2440bp|location=Sequence derived from alignment at S-latissima_F_contig1034:112814..115253- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1034:112814..115253- >mRNA_S-latissima_F_contig1034.310.1 ID=mRNA_S-latissima_F_contig1034.310.1|Name=mRNA_S-latissima_F_contig1034.310.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=4476bp|location=Sequence derived from alignment at S-latissima_F_contig1034:112814..115253- (Saccharina latissima SLPER63f female)back to top |