mRNA_P-littoralis_Contig166.10.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE) HSP 1 Score: 376 bits (966), Expect = 5.320e-125 Identity = 184/221 (83.26%), Postives = 201/221 (90.95%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNIR 663
RSLVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++ MKEAIFLRYLW FI P DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVH R LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 356 RSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE) HSP 1 Score: 376 bits (966), Expect = 2.380e-122 Identity = 184/221 (83.26%), Postives = 201/221 (90.95%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNIR 663
RSLVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++ MKEAIFLRYLW FI P DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVH R LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 580 RSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE) HSP 1 Score: 366 bits (939), Expect = 4.280e-121 Identity = 181/221 (81.90%), Postives = 197/221 (89.14%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNIR 663
RSLVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLMYVR T+ GITFQRG GG+HMEL VDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++ M EAIFLRYLW I LDVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVH R LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 343 RSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGCGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE) HSP 1 Score: 368 bits (944), Expect = 2.550e-116 Identity = 181/221 (81.90%), Postives = 198/221 (89.59%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNIR 663
RSLVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKS TLSSTEAEYVA+++ MKEAIFLRYLW FI P DVGCT V EDNVGA++LASNPATTPNSK IDI+HHFIRERVARG F+VVH R LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 884 RSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSGTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1104
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE) HSP 1 Score: 376 bits (966), Expect = 2.820e-116 Identity = 184/221 (83.26%), Postives = 201/221 (90.95%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNIR 663
RSLVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLMYVR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++ MKEAIFLRYLW FI P DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVH R LQRADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 1656 RSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE) HSP 1 Score: 361 bits (927), Expect = 1.010e-114 Identity = 177/220 (80.45%), Postives = 197/220 (89.55%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNI 660
R LVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLM+VR T+ +GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAEYVA+++ MKEAIFLR+LW F+ P DVGCT V EDNVGA +LAS A+TPNSKHIDI+HHFIRERVARGEF+VVHAR LQRADFLTK LPK+ FCAHRDFVMNI
Sbjct: 772 RLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARGEFKVVHARSDLQRADFLTKPLPKETFCAHRDFVMNI 991
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE) HSP 1 Score: 340 bits (871), Expect = 8.690e-114 Identity = 162/220 (73.64%), Postives = 193/220 (87.73%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNI 660
RSLVGH+MWLAN+TRPDILNAVRAVARYS+A K VHW+AALH++MY+R T+ +GITFQRG GG +E++VDSD+ASKATDRRSVSG VVM AG+C+ + RTQKSVTLSSTEAEY A+A+ MKEAIFLRYLW+FI PD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+ LQ ADFLTK LPK+AF HR+FVMN+
Sbjct: 126 RSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHIVMYIRCTSAYGITFQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5KPR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR3_9PHAE) HSP 1 Score: 331 bits (848), Expect = 6.580e-112 Identity = 164/203 (80.79%), Postives = 180/203 (88.67%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTK 609
RSLVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLMYVR T+ +GITFQRG GG+HMEL VDSDFA+KATDRRSVSGA+VM AGAC+MYL R QKSVTLSSTEAEY+A+ + MKEAIFLRYLW FI P DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVH LQRADFLTK
Sbjct: 22 RSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMIAGACVMYLCRMQKSVTLSSTEAEYMAMFDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVPSDLQRADFLTK 224
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 335 bits (859), Expect = 6.600e-104 Identity = 161/220 (73.18%), Postives = 191/220 (86.82%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAEYVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHARPALQRADFLTKALPKDAFCAHRDFVMNI 660
RSLVGH+MWLAN+TRPDILNAVRAVARYS+A K VHW+AALH++MY+R T +GIT QRG GG +E++VDSD+ASKATDRRSVSG VVM AG+C+ + RTQKSVTLSSTEAEY A+A+ MKEAIFLRYLW+FI PD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+ LQ ADFLTK LPK+AF HR+FVMN+
Sbjct: 894 RSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMVMYIRCTRAYGITLQRGTAGGVSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE) HSP 1 Score: 301 bits (771), Expect = 2.880e-99 Identity = 153/197 (77.66%), Postives = 166/197 (84.26%), Query Frame = 1
Query: 1 RSLVGHMMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITFQRGVPGGEHMELFVDSDFASKATDRRSVSGAVVMFAGACLMYLPRTQKSVTLSSTEAE-------------YVALAERMKEAIFLRYLWNFILPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARG 552
RSLVGH+MWLAN+TRPDILNAVRAVARYSHA K +HW AALHVLMYVR T GITFQRG GG+HMELFVDSDFA+KATDRRSVSGA+VMFAGAC+MYL RTQKSVTLSSTEAE YVA+++ MKEAIFLRYLW FI P DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFI ERVARG
Sbjct: 101 RSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTRGNGITFQRGTEGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEXXXXXXXXXXXXEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIHERVARG 297 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig166.10.1 >prot_P-littoralis_Contig166.10.1 ID=prot_P-littoralis_Contig166.10.1|Name=mRNA_P-littoralis_Contig166.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp MMWLANETRPDILNAVRAVARYSHALKLVHWRAALHVLMYVRGTTDFGITback to top mRNA from alignment at P-littoralis_Contig166:88668..89482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig166.10.1 ID=mRNA_P-littoralis_Contig166.10.1|Name=mRNA_P-littoralis_Contig166.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=815bp|location=Sequence derived from alignment at P-littoralis_Contig166:88668..89482+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig166:88668..89482+ >mRNA_P-littoralis_Contig166.10.1 ID=mRNA_P-littoralis_Contig166.10.1|Name=mRNA_P-littoralis_Contig166.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig166:88668..89482+ (Pylaiella littoralis U1_48)back to top |