mRNA_P-littoralis_Contig1633.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A6G6D7A3_ECTSI (Photosystem II CP47 reaction center protein n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7A3_ECTSI) HSP 1 Score: 482 bits (1241), Expect = 8.320e-167 Identity = 230/236 (97.46%), Postives = 233/236 (98.73%), Query Frame = 3
Query: 219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
SLDLPKIFGIHLFLS LLCF FGAFHVTGFFGPGIWVSDAYGLTGQ+QPVAPSWGPSGFNPFNPGG+ASHHMAAG+FGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSES AWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP
Sbjct: 133 SLDLPKIFGIHLFLSGLLCFGFGAFHVTGFFGPGIWVSDAYGLTGQVQPVAPSWGPSGFNPFNPGGIASHHMAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESEAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 368
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A8CCR8_9STRA (Photosystem II P680 chlorophyll A apoprotein (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=A8CCR8_9STRA) HSP 1 Score: 454 bits (1169), Expect = 1.360e-158 Identity = 211/238 (88.66%), Postives = 226/238 (94.96%), Query Frame = 3
Query: 213 NASLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSDAYGLTG++QPVAP+WGP GFNPFNPGGVASHH+AAGTFG+LAG FHLT+RPPQRLYRALRMGNIETVLSSSI+AVFFAAF+TSGTMWYG ATTPIELFGPTRYQWDSGYFQQEIERRVE SL++GLSES AWS +PDKLAFYDYIGNNPAKGGLFR+GPM+KGDGIAEAWLGHP+FRDREGREL+VRRMPAFFETFP
Sbjct: 11 ETGLDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGLTGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTFGILAGVFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGCATTPIELFGPTRYQWDSGYFQQEIERRVETSLSDGLSESEAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPVFRDREGRELTVRRMPAFFETFP 248
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A7S2V2W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W1_9STRA) HSP 1 Score: 450 bits (1158), Expect = 3.120e-154 Identity = 214/242 (88.43%), Postives = 223/242 (92.15%), Query Frame = 3
Query: 207 PKNAS--LDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
PK+ LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSDAYGLTG++QP APSWGP GFNPFNPGGVA+HHMAAGT GVLAG FHL +RPPQRLYRAL MGNIETVLSSSIAAVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE SL LSE+ AWS +PDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGREL+VRRMPAFFETFP
Sbjct: 126 PKSGDPGLDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGLTGKVQPAAPSWGPEGFNPFNPGGVAAHHMAAGTVGVLAGTFHLVVRPPQRLYRALSMGNIETVLSSSIAAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEASLTGNLSENEAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELTVRRMPAFFETFP 367
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A7S1TCG8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCG8_9RHOD) HSP 1 Score: 446 bits (1146), Expect = 4.520e-154 Identity = 207/236 (87.71%), Postives = 222/236 (94.07%), Query Frame = 3
Query: 219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
+LDLPKIFGIHL L+SL+CF FGAFHVTG FGPGIWVSDAYG+TG++QPVAPSWGP GFNPFNPGG+ASHH+AAGT G+LAG FHLT+RPPQRLYRALRMGNIETVLSSSIAAVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE S+ EG S AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIF D+EGRELSVRRMPAFFETFP
Sbjct: 19 ALDLPKIFGIHLLLASLICFGFGAFHVTGVFGPGIWVSDAYGITGKVQPVAPSWGPEGFNPFNPGGIASHHIAAGTVGILAGAFHLTVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSITEGASTVEAWSQIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFTDKEGRELSVRRMPAFFETFP 254
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A8CCS5_ISOGA (Photosystem II P680 chlorophyll A apoprotein (Fragment) n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A8CCS5_ISOGA) HSP 1 Score: 442 bits (1137), Expect = 5.500e-154 Identity = 207/236 (87.71%), Postives = 224/236 (94.92%), Query Frame = 3
Query: 219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
+LDLPKIFGIHLFLSSLLCF FGAFHVTG FGPGIWVSDAYG+TG++Q VAP+WG GFNPFNPGG+ASHH+AAG G+LAG FHLT+RPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYG+ATTPIELFGPTRYQWDSGYFQQEIERRVE SL+EGLS S AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHP+F+D+EGREL+VRRMPAFFETFP
Sbjct: 9 ALDLPKIFGIHLFLSSLLCFGFGAFHVTGTFGPGIWVSDAYGVTGRVQAVAPAWGAEGFNPFNPGGIASHHIAAGILGLLAGVFHLTIRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGAATTPIELFGPTRYQWDSGYFQQEIERRVETSLSEGLSLSQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGRELTVRRMPAFFETFP 244
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A3G2QYB8_9STRA (Photosystem II CP47 reaction center protein n=14 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYB8_9STRA) HSP 1 Score: 445 bits (1145), Expect = 2.920e-152 Identity = 206/236 (87.29%), Postives = 224/236 (94.92%), Query Frame = 3
Query: 219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
+LDLPKIFGIHL LS LCF FGAFHVTG FGPGIWVSDA+GLTG++QPVAPSWGP GFNPFNPGG+ASHH+AAGT G++AG FHLT+RPPQRLYRALRMGNIETVLSSSI+AVF+AAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE S+++ LSE+ AWS +PDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGREL+VRRMPAFFETFP
Sbjct: 132 ALDLPKIFGIHLLLSGFLCFGFGAFHVTGLFGPGIWVSDAFGLTGRVQPVAPSWGPEGFNPFNPGGIASHHIAAGTLGIIAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFWAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSVSQNLSETDAWSQIPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELTVRRMPAFFETFP 367
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A1C9CDW4_PORSO (Photosystem II CP47 reaction center protein n=1 Tax=Porphyridium sordidum TaxID=28024 RepID=A0A1C9CDW4_PORSO) HSP 1 Score: 443 bits (1140), Expect = 1.620e-151 Identity = 206/236 (87.29%), Postives = 226/236 (95.76%), Query Frame = 3
Query: 219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
+LDLPKIFGIHL L+S+LCF FGAFHVTG FGPGIWVSDAYG+TG++QPVAP+WGP GFNPFNPGGVASHH+AAGT G+LAG FHL++RPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIER+VE SL+EGLS + AWS +PDKLAFYDYIGNNPAKGGLFRSGPM+KGDGIAEAWLGHP+F+D+EGREL+VRRMPAFFETFP
Sbjct: 131 ALDLPKIFGIHLLLASILCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPAWGPEGFNPFNPGGVASHHIAAGTVGILAGVFHLSIRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERQVENSLSEGLSLNDAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMDKGDGIAEAWLGHPVFKDKEGRELTVRRMPAFFETFP 366
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: K9ZW94_9STRA (Photosystem II CP47 reaction center protein n=19 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZW94_9STRA) HSP 1 Score: 443 bits (1140), Expect = 1.670e-151 Identity = 206/236 (87.29%), Postives = 223/236 (94.49%), Query Frame = 3
Query: 219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
SLDLPK+FGIHLFLS +LC FGAFHVTGFFGPGIW+SDAYGLTG++Q VAPSWGP GFNPFNPGGVA+HH+AAGTFG+LAG FH+ +RPPQRLYR LRMGNIETVLSSSIAAVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE S+ EGLS+S AW+ +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIF DREGREL+VRRMPAFFETFP
Sbjct: 132 SLDLPKVFGIHLFLSGILCLGFGAFHVTGFFGPGIWLSDAYGLTGKVQGVAPSWGPDGFNPFNPGGVAAHHIAAGTFGILAGFFHIIVRPPQRLYRGLRMGNIETVLSSSIAAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSVAEGLSKSQAWARIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFTDREGRELTVRRMPAFFETFP 367
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A7U0QGP2_OLILU (Photosystem II CP47 reaction center protein n=13 Tax=Ochrophyta TaxID=2696291 RepID=A0A7U0QGP2_OLILU) HSP 1 Score: 443 bits (1139), Expect = 2.290e-151 Identity = 204/239 (85.36%), Postives = 223/239 (93.31%), Query Frame = 3
Query: 210 KNASLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
+ +LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSD+YGLTG++Q PSWGP GFNPFNPGGVA+HH+AAGTFG+LAG FH+T+RPPQRLYRALRMGNIETVLSSSI+AVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERR+E SL + +S S AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIFRD+EGREL+VRRMPAFFETFP
Sbjct: 128 REPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDSYGLTGKVQAAIPSWGPEGFNPFNPGGVAAHHIAAGTFGILAGVFHITVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRIETSLEQNVSLSDAWSEIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKEGRELTVRRMPAFFETFP 366
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: PSBB_TRICV (Photosystem II CP47 reaction center protein n=85 Tax=Sar TaxID=2698737 RepID=PSBB_TRICV) HSP 1 Score: 443 bits (1139), Expect = 2.370e-151 Identity = 204/236 (86.44%), Postives = 224/236 (94.92%), Query Frame = 3
Query: 219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
+LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSDAYG+TG++QPVAP+WG GFNPFNPGG+A+HH+AAG FG+ AG FHLT+RPPQRLYRALRMGNIETVLSSSIAAVFFAAF+TSGTMWYG+A TPIELFGPTRYQWDSGYFQQEIER+VE S++EGLSES AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIFRD++GREL+VRRMPAFFETFP
Sbjct: 132 ALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGVTGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKDGRELTVRRMPAFFETFP 367 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1633.4.1 >prot_P-littoralis_Contig1633.4.1 ID=prot_P-littoralis_Contig1633.4.1|Name=mRNA_P-littoralis_Contig1633.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp MAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITback to top mRNA from alignment at P-littoralis_Contig1633:5496..6439+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1633.4.1 ID=mRNA_P-littoralis_Contig1633.4.1|Name=mRNA_P-littoralis_Contig1633.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=944bp|location=Sequence derived from alignment at P-littoralis_Contig1633:5496..6439+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1633:5496..6439+ >mRNA_P-littoralis_Contig1633.4.1 ID=mRNA_P-littoralis_Contig1633.4.1|Name=mRNA_P-littoralis_Contig1633.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig1633:5496..6439+ (Pylaiella littoralis U1_48)back to top |