mRNA_P-littoralis_Contig1633.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1633.4.1
Unique NamemRNA_P-littoralis_Contig1633.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A6G6D7A3_ECTSI (Photosystem II CP47 reaction center protein n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7A3_ECTSI)

HSP 1 Score: 482 bits (1241), Expect = 8.320e-167
Identity = 230/236 (97.46%), Postives = 233/236 (98.73%), Query Frame = 3
Query:  219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            SLDLPKIFGIHLFLS LLCF FGAFHVTGFFGPGIWVSDAYGLTGQ+QPVAPSWGPSGFNPFNPGG+ASHHMAAG+FGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSES AWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP
Sbjct:  133 SLDLPKIFGIHLFLSGLLCFGFGAFHVTGFFGPGIWVSDAYGLTGQVQPVAPSWGPSGFNPFNPGGIASHHMAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESEAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 368          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A8CCR8_9STRA (Photosystem II P680 chlorophyll A apoprotein (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=A8CCR8_9STRA)

HSP 1 Score: 454 bits (1169), Expect = 1.360e-158
Identity = 211/238 (88.66%), Postives = 226/238 (94.96%), Query Frame = 3
Query:  213 NASLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
               LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSDAYGLTG++QPVAP+WGP GFNPFNPGGVASHH+AAGTFG+LAG FHLT+RPPQRLYRALRMGNIETVLSSSI+AVFFAAF+TSGTMWYG ATTPIELFGPTRYQWDSGYFQQEIERRVE SL++GLSES AWS +PDKLAFYDYIGNNPAKGGLFR+GPM+KGDGIAEAWLGHP+FRDREGREL+VRRMPAFFETFP
Sbjct:   11 ETGLDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGLTGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTFGILAGVFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGCATTPIELFGPTRYQWDSGYFQQEIERRVETSLSDGLSESEAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPVFRDREGRELTVRRMPAFFETFP 248          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A7S2V2W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W1_9STRA)

HSP 1 Score: 450 bits (1158), Expect = 3.120e-154
Identity = 214/242 (88.43%), Postives = 223/242 (92.15%), Query Frame = 3
Query:  207 PKNAS--LDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            PK+    LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSDAYGLTG++QP APSWGP GFNPFNPGGVA+HHMAAGT GVLAG FHL +RPPQRLYRAL MGNIETVLSSSIAAVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE SL   LSE+ AWS +PDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGREL+VRRMPAFFETFP
Sbjct:  126 PKSGDPGLDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGLTGKVQPAAPSWGPEGFNPFNPGGVAAHHMAAGTVGVLAGTFHLVVRPPQRLYRALSMGNIETVLSSSIAAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEASLTGNLSENEAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELTVRRMPAFFETFP 367          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A7S1TCG8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCG8_9RHOD)

HSP 1 Score: 446 bits (1146), Expect = 4.520e-154
Identity = 207/236 (87.71%), Postives = 222/236 (94.07%), Query Frame = 3
Query:  219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            +LDLPKIFGIHL L+SL+CF FGAFHVTG FGPGIWVSDAYG+TG++QPVAPSWGP GFNPFNPGG+ASHH+AAGT G+LAG FHLT+RPPQRLYRALRMGNIETVLSSSIAAVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE S+ EG S   AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIF D+EGRELSVRRMPAFFETFP
Sbjct:   19 ALDLPKIFGIHLLLASLICFGFGAFHVTGVFGPGIWVSDAYGITGKVQPVAPSWGPEGFNPFNPGGIASHHIAAGTVGILAGAFHLTVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSITEGASTVEAWSQIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFTDKEGRELSVRRMPAFFETFP 254          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A8CCS5_ISOGA (Photosystem II P680 chlorophyll A apoprotein (Fragment) n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A8CCS5_ISOGA)

HSP 1 Score: 442 bits (1137), Expect = 5.500e-154
Identity = 207/236 (87.71%), Postives = 224/236 (94.92%), Query Frame = 3
Query:  219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            +LDLPKIFGIHLFLSSLLCF FGAFHVTG FGPGIWVSDAYG+TG++Q VAP+WG  GFNPFNPGG+ASHH+AAG  G+LAG FHLT+RPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYG+ATTPIELFGPTRYQWDSGYFQQEIERRVE SL+EGLS S AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHP+F+D+EGREL+VRRMPAFFETFP
Sbjct:    9 ALDLPKIFGIHLFLSSLLCFGFGAFHVTGTFGPGIWVSDAYGVTGRVQAVAPAWGAEGFNPFNPGGIASHHIAAGILGLLAGVFHLTIRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGAATTPIELFGPTRYQWDSGYFQQEIERRVETSLSEGLSLSQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGRELTVRRMPAFFETFP 244          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A3G2QYB8_9STRA (Photosystem II CP47 reaction center protein n=14 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYB8_9STRA)

HSP 1 Score: 445 bits (1145), Expect = 2.920e-152
Identity = 206/236 (87.29%), Postives = 224/236 (94.92%), Query Frame = 3
Query:  219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            +LDLPKIFGIHL LS  LCF FGAFHVTG FGPGIWVSDA+GLTG++QPVAPSWGP GFNPFNPGG+ASHH+AAGT G++AG FHLT+RPPQRLYRALRMGNIETVLSSSI+AVF+AAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE S+++ LSE+ AWS +PDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGREL+VRRMPAFFETFP
Sbjct:  132 ALDLPKIFGIHLLLSGFLCFGFGAFHVTGLFGPGIWVSDAFGLTGRVQPVAPSWGPEGFNPFNPGGIASHHIAAGTLGIIAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFWAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSVSQNLSETDAWSQIPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELTVRRMPAFFETFP 367          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A1C9CDW4_PORSO (Photosystem II CP47 reaction center protein n=1 Tax=Porphyridium sordidum TaxID=28024 RepID=A0A1C9CDW4_PORSO)

HSP 1 Score: 443 bits (1140), Expect = 1.620e-151
Identity = 206/236 (87.29%), Postives = 226/236 (95.76%), Query Frame = 3
Query:  219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            +LDLPKIFGIHL L+S+LCF FGAFHVTG FGPGIWVSDAYG+TG++QPVAP+WGP GFNPFNPGGVASHH+AAGT G+LAG FHL++RPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIER+VE SL+EGLS + AWS +PDKLAFYDYIGNNPAKGGLFRSGPM+KGDGIAEAWLGHP+F+D+EGREL+VRRMPAFFETFP
Sbjct:  131 ALDLPKIFGIHLLLASILCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPAWGPEGFNPFNPGGVASHHIAAGTVGILAGVFHLSIRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERQVENSLSEGLSLNDAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMDKGDGIAEAWLGHPVFKDKEGRELTVRRMPAFFETFP 366          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: K9ZW94_9STRA (Photosystem II CP47 reaction center protein n=19 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZW94_9STRA)

HSP 1 Score: 443 bits (1140), Expect = 1.670e-151
Identity = 206/236 (87.29%), Postives = 223/236 (94.49%), Query Frame = 3
Query:  219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            SLDLPK+FGIHLFLS +LC  FGAFHVTGFFGPGIW+SDAYGLTG++Q VAPSWGP GFNPFNPGGVA+HH+AAGTFG+LAG FH+ +RPPQRLYR LRMGNIETVLSSSIAAVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE S+ EGLS+S AW+ +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIF DREGREL+VRRMPAFFETFP
Sbjct:  132 SLDLPKVFGIHLFLSGILCLGFGAFHVTGFFGPGIWLSDAYGLTGKVQGVAPSWGPDGFNPFNPGGVAAHHIAAGTFGILAGFFHIIVRPPQRLYRGLRMGNIETVLSSSIAAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSVAEGLSKSQAWARIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFTDREGRELTVRRMPAFFETFP 367          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: A0A7U0QGP2_OLILU (Photosystem II CP47 reaction center protein n=13 Tax=Ochrophyta TaxID=2696291 RepID=A0A7U0QGP2_OLILU)

HSP 1 Score: 443 bits (1139), Expect = 2.290e-151
Identity = 204/239 (85.36%), Postives = 223/239 (93.31%), Query Frame = 3
Query:  210 KNASLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            +  +LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSD+YGLTG++Q   PSWGP GFNPFNPGGVA+HH+AAGTFG+LAG FH+T+RPPQRLYRALRMGNIETVLSSSI+AVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERR+E SL + +S S AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIFRD+EGREL+VRRMPAFFETFP
Sbjct:  128 REPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDSYGLTGKVQAAIPSWGPEGFNPFNPGGVAAHHIAAGTFGILAGVFHITVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRIETSLEQNVSLSDAWSEIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKEGRELTVRRMPAFFETFP 366          
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Match: PSBB_TRICV (Photosystem II CP47 reaction center protein n=85 Tax=Sar TaxID=2698737 RepID=PSBB_TRICV)

HSP 1 Score: 443 bits (1139), Expect = 2.370e-151
Identity = 204/236 (86.44%), Postives = 224/236 (94.92%), Query Frame = 3
Query:  219 SLDLPKIFGIHLFLSSLLCFSFGAFHVTGFFGPGIWVSDAYGLTGQIQPVAPSWGPSGFNPFNPGGVASHHMAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAWSSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELSVRRMPAFFETFP 926
            +LDLPKIFGIHLFLS LLCF FGAFHVTG FGPGIWVSDAYG+TG++QPVAP+WG  GFNPFNPGG+A+HH+AAG FG+ AG FHLT+RPPQRLYRALRMGNIETVLSSSIAAVFFAAF+TSGTMWYG+A TPIELFGPTRYQWDSGYFQQEIER+VE S++EGLSES AWS +PDKLAFYDYIGNNPAKGGLFR+GPMNKGDGIAEAWLGHPIFRD++GREL+VRRMPAFFETFP
Sbjct:  132 ALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGVTGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKDGRELTVRRMPAFFETFP 367          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1633.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7A3_ECTSI8.320e-16797.46Photosystem II CP47 reaction center protein n=55 T... [more]
A8CCR8_9STRA1.360e-15888.66Photosystem II P680 chlorophyll A apoprotein (Frag... [more]
A0A7S2V2W1_9STRA3.120e-15488.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TCG8_9RHOD4.520e-15487.71Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A8CCS5_ISOGA5.500e-15487.71Photosystem II P680 chlorophyll A apoprotein (Frag... [more]
A0A3G2QYB8_9STRA2.920e-15287.29Photosystem II CP47 reaction center protein n=14 T... [more]
A0A1C9CDW4_PORSO1.620e-15187.29Photosystem II CP47 reaction center protein n=1 Ta... [more]
K9ZW94_9STRA1.670e-15187.29Photosystem II CP47 reaction center protein n=19 T... [more]
A0A7U0QGP2_OLILU2.290e-15185.36Photosystem II CP47 reaction center protein n=13 T... [more]
PSBB_TRICV2.370e-15186.44Photosystem II CP47 reaction center protein n=85 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1633contigP-littoralis_Contig1633:5496..6439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D1J718
Preferred namepsbB
PFAMsPSII
Model size944
Max annot lvl2759|Eukaryota
KEGG koko:K02704
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010207,GO:0010287,GO:0015979,GO:0016020,GO:0016043,GO:0019684,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
Exons1
Evalue2.02e-113
EggNOG OGs28JG1@1|root,2QRV6@2759|Eukaryota
Descriptionphotosynthetic electron transport in photosystem II
Cds size513
COG categoryS
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789790.2161093-UTR-P-littoralis_Contig1633:5495..59261680789790.2161093-UTR-P-littoralis_Contig1633:5495..5926Pylaiella littoralis U1_48UTRP-littoralis_Contig1633 5496..5926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789790.227869-CDS-P-littoralis_Contig1633:5926..64391680789790.227869-CDS-P-littoralis_Contig1633:5926..6439Pylaiella littoralis U1_48CDSP-littoralis_Contig1633 5927..6439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1633.4.1prot_P-littoralis_Contig1633.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1633 5927..6439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1633.4.1

>prot_P-littoralis_Contig1633.4.1 ID=prot_P-littoralis_Contig1633.4.1|Name=mRNA_P-littoralis_Contig1633.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
MAAGTFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFIT
SGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESAAW
SSLPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGR
ELSVRRMPAFFETFPTRNCY*
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mRNA from alignment at P-littoralis_Contig1633:5496..6439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1633.4.1 ID=mRNA_P-littoralis_Contig1633.4.1|Name=mRNA_P-littoralis_Contig1633.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=944bp|location=Sequence derived from alignment at P-littoralis_Contig1633:5496..6439+ (Pylaiella littoralis U1_48)
AAAGGTATGTTTGTTATGCCTTTTATGACAAGATTAGGTGTTTCTGATTC TTGGACAGGATGGGATATAGCTGGAGAAAGAGCTGAACCAATTGCAAGTT TATGGTGTTATGAAGGAGTAGCTTATACTCATATTATATTATCAGGTCTT TGTTTCTTAGCTGCTGTTTGGCATTGGGTTTACTGGGATCTTGAATTATT TCGTGACCCAAGAACGCTTCTTTGGATTTACCAAAAATTTTCGGTATACA TTTATTTTTATCTAGTTTATTATGTTTTTCTTTTGGGGCATTCCACGTTA CTGGGTTCTTTGGACCAGGGATTTGGGTTTCTGATGCATATGGTTTAACA GGGCAAATTCAACCAGTAGCACCTTCATGGGGTCCTTCAGGTTTTAATCC TTTCAACCCAGGTGGGGTAGCTTCACACCATATGGCAGCAGGTACTTTCG GAGTTTTAGCAGGTGGCTTTCATTTAACTTTAAGACCACCTCAACGCTTA TACCGAGCATTGAGAATGGGAAATATTGAAACAGTATTATCAAGTAGTAT TGCCGCTGTTTTCTTTGCAGCCTTTATTACTTCAGGAACTATGTGGTATG GTTCTGCAACTACACCAATTGAATTATTTGGACCGACAAGATACCAATGG GATAGTGGTTATTTTCAACAAGAAATTGAGCGCCGTGTCGAAGTTTCATT GAATGAGGGTTTATCAGAAAGTGCAGCTTGGTCAAGTCTTCCTGATAAAT TAGCCTTTTATGATTACATTGGTAATAATCCAGCGAAAGGTGGTTTATTT AGATCTGGTCCTATGAACAAAGGTGATGGTATAGCAGAAGCTTGGTTAGG TCACCCAATTTTTAGAGATCGCGAAGGTCGAGAATTATCAGTACGCCGTA TGCCTGCTTTCTTTGAAACATTCCCTACAAGAAATTGTTATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1633:5496..6439+

>mRNA_P-littoralis_Contig1633.4.1 ID=mRNA_P-littoralis_Contig1633.4.1|Name=mRNA_P-littoralis_Contig1633.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig1633:5496..6439+ (Pylaiella littoralis U1_48)
ATGGCAGCAGGTACTTTCGGAGTTTTAGCAGGTGGCTTTCATTTAACTTT
AAGACCACCTCAACGCTTATACCGAGCATTGAGAATGGGAAATATTGAAA
CAGTATTATCAAGTAGTATTGCCGCTGTTTTCTTTGCAGCCTTTATTACT
TCAGGAACTATGTGGTATGGTTCTGCAACTACACCAATTGAATTATTTGG
ACCGACAAGATACCAATGGGATAGTGGTTATTTTCAACAAGAAATTGAGC
GCCGTGTCGAAGTTTCATTGAATGAGGGTTTATCAGAAAGTGCAGCTTGG
TCAAGTCTTCCTGATAAATTAGCCTTTTATGATTACATTGGTAATAATCC
AGCGAAAGGTGGTTTATTTAGATCTGGTCCTATGAACAAAGGTGATGGTA
TAGCAGAAGCTTGGTTAGGTCACCCAATTTTTAGAGATCGCGAAGGTCGA
GAATTATCAGTACGCCGTATGCCTGCTTTCTTTGAAACATTCCCTACAAG
AAATTGTTATTGA
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