mRNA_P-littoralis_Contig163.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig163.73.1
Unique NamemRNA_P-littoralis_Contig163.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.970e-30
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREV 387
            CC+++RP  M H  GF+ F+G LSP YV  T+   T    LD L + V+ +++  L+   + C  +G+ G F G Q DLT+  G E+ T TVS++ +G T++ R+ L  +AFPGTHTA D+ PWI E+
Sbjct:  214 CCINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEEL 341          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.030e-29
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREV 387
            CC+D+RP  +    GF+ F+G LSP YVT T+ KST +  LD L   V ++++  L+   +    +G+ GPF G Q DLT+  G E+ T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI ++
Sbjct:   21 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKL 148          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.230e-29
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREV 387
            CC+D+RP  +    GF+ F+G LSP YVT T+ KST +  LD L   V ++++  L+   +    +G+ GPF G Q DLT+  G E+ T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI ++
Sbjct:  216 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKL 343          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.740e-29
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIRE 384
            CC+D+RP  +    GF+ F+G LSP YVT T+ KST +  LD L   V ++++  L+   +    +G+ GPF G Q DLT+  G E+ T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI +
Sbjct: 1300 CCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.710e-29
Identity = 52/125 (41.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWI 378
            CC+++RP  M +  GF+ FVG LSP YV  T+  +T + +LD L   ++  ++  L+   + C  +G+GG F G Q DLT+  G E+ T  VS++ +G T++ R++L T+AFPG+HTA D+ PWI
Sbjct:   25 CCINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWI 149          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.270e-28
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWI 378
            CC++ RP  M +  GF+ FVG LSP YV  T+  +T + +LD L   V   ++  L+   + C  +G+GG F G Q DLT+  G E+ T  VS++ +G T++ R++L T+AFPG+HTA D+ PWI
Sbjct:   25 CCINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWI 149          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.040e-28
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    7 CVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREV 387
            C+++RP  M H  GF+ F+G LSP YV  T+   T    LD L   V  +++  L+   + C  +G+ G F G Q DLT+  G E+ T TVS++ +G T++ R+ L  +AFPGTHTA D+ PWI E+
Sbjct:  331 CINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYGKVNTSVVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWIEEL 457          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.720e-25
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIRE 384
            C ++MRP +M +  G++  +G L P YV  T+  +T ++IL  +  +    + T L+ H +SC KLG+ GPF G Q DLT+    E+ T +VS+I    T + R+ L T+AFPG+HTA+D++PWI +
Sbjct:  196 CAINMRPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEK 322          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.700e-24
Identity = 52/126 (41.27%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    4 CCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGHTE-MERLTLTTKAFPGTHTASDVDPWI 378
            CC+++RP  M +  GF+ FVG LSP YV  T+  +T + +LDAL   V+  ++  L+   +    +G+GG F G   DLT+    E+ T TVS++ +G T+ + R+ L T+AFPG+HTA D+ PWI
Sbjct:   21 CCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWI 146          
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-11
Identity = 51/173 (29.48%), Postives = 74/173 (42.77%), Query Frame = 1
Query:    1 MCCVD-MRPFSMAHRAGFQYFVGGLSPAY-------------------------VTETIHKS----TLSNILDALAADVRANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHG--------------TEFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREV 387
            MC +  + P S+    G + FVGGL+P Y                         VTE  + +    T + IL  L A VR  + + L+ H +SC++LGW GPF G+Q D T   G               E CT +VSF+      + RL +  + F G   +   + WIRE+
Sbjct:  137 MCALQTLDPGSLCSDLGHRLFVGGLAPGYGAGRRLARRRSGLAPSGSSYAASTAVTEGANGARAAGTANAILQDLCAGVRREVASALRAHSESCRRLGWSGPFVGLQVDSTGLPGGEGXXXXXXXXXXXEEVCTASVSFVSEDFGGLVRLAIGARCFRGRQMSHAKETWIREL 309          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig163.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE8.970e-3042.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.030e-2942.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.230e-2942.97Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE1.740e-2943.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE6.710e-2941.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.270e-2842.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE7.040e-2841.73Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KJ52_9PHAE8.720e-2540.16Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE1.700e-2441.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G031_ECTSI1.410e-1129.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig163contigP-littoralis_Contig163:465860..466246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size387
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789789.6139436-CDS-P-littoralis_Contig163:465859..4662461680789789.6139436-CDS-P-littoralis_Contig163:465859..466246Pylaiella littoralis U1_48CDSP-littoralis_Contig163 465860..466246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig163.73.1prot_P-littoralis_Contig163.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig163 465860..466246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig163.73.1

>prot_P-littoralis_Contig163.73.1 ID=prot_P-littoralis_Contig163.73.1|Name=mRNA_P-littoralis_Contig163.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MCCVDMRPFSMAHRAGFQYFVGGLSPAYVTETIHKSTLSNILDALAADVR
ANLITTLKDHVDSCKKLGWGGPFFGVQSDLTSTHGTEFCTLTVSFIPRGH
TEMERLTLTTKAFPGTHTASDVDPWIREV
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mRNA from alignment at P-littoralis_Contig163:465860..466246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig163.73.1 ID=mRNA_P-littoralis_Contig163.73.1|Name=mRNA_P-littoralis_Contig163.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig163:465860..466246+ (Pylaiella littoralis U1_48)
ATGTGCTGCGTCGACATGCGGCCGTTCTCGATGGCGCATCGGGCTGGGTT CCAGTACTTCGTCGGCGGCTTGAGCCCGGCGTACGTAACGGAGACGATAC ACAAGAGCACACTTTCAAACATTTTGGATGCCTTGGCCGCCGATGTTCGC GCCAACCTCATCACGACGCTGAAGGACCACGTAGATTCCTGCAAGAAACT CGGGTGGGGCGGGCCCTTCTTTGGCGTGCAGTCGGACCTAACCAGTACGC ACGGCACCGAGTTCTGCACTCTCACCGTTTCCTTCATCCCGCGGGGTCAC ACGGAGATGGAGCGACTGACGCTGACGACAAAGGCGTTCCCGGGTACGCA CACGGCAAGCGATGTGGACCCGTGGATCCGTGAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig163:465860..466246+

>mRNA_P-littoralis_Contig163.73.1 ID=mRNA_P-littoralis_Contig163.73.1|Name=mRNA_P-littoralis_Contig163.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig163:465860..466246+ (Pylaiella littoralis U1_48)
ATGTGCTGCGTCGACATGCGGCCGTTCTCGATGGCGCATCGGGCTGGGTT
CCAGTACTTCGTCGGCGGCTTGAGCCCGGCGTACGTAACGGAGACGATAC
ACAAGAGCACACTTTCAAACATTTTGGATGCCTTGGCCGCCGATGTTCGC
GCCAACCTCATCACGACGCTGAAGGACCACGTAGATTCCTGCAAGAAACT
CGGGTGGGGCGGGCCCTTCTTTGGCGTGCAGTCGGACCTAACCAGTACGC
ACGGCACCGAGTTCTGCACTCTCACCGTTTCCTTCATCCCGCGGGGTCAC
ACGGAGATGGAGCGACTGACGCTGACGACAAAGGCGTTCCCGGGTACGCA
CACGGCAAGCGATGTGGACCCGTGGATCCGTGAGGTG
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