mRNA_P-littoralis_Contig1622.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1622.1.1
Unique NamemRNA_P-littoralis_Contig1622.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: Q94YZ5_PYLLI (Cytochrome-c oxidase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94YZ5_PYLLI)

HSP 1 Score: 318 bits (816), Expect = 1.100e-96
Identity = 167/190 (87.89%), Postives = 173/190 (91.05%), Query Frame = 3
Query:  129 KISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN 698
            K+  K++ K +     +      G IFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRA+DILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQV LMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN
Sbjct:  856 KLVLKRAEKALTSARLKDTNGYSGLIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRATDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVILMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN 1045          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: D1H013_ECTSI (Cytochrome oxidase 2 (Fragment) n=9 Tax=Ectocarpus TaxID=2879 RepID=D1H013_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.840e-58
Identity = 105/191 (54.97%), Postives = 138/191 (72.25%), Query Frame = 3
Query:  126 FKISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN 698
            FK+   ++ KG++           G +F      I S  LI  YA+SCL +TK +LD AE DY++A  IL+K + +L+ V+++L+K+Y+N  L+TLR LHK T+LSL  RIEQ+NL RLE SPLDIKL PGLLQS+SY+EVLLAK+ELANIKWL ARV+KTLDIPL +E KPFNVQFS+LK ++   D+ N
Sbjct:   76 FKLILDRAEKGLSDAMVNSKTCYLGSVFENSSNDIDSNKLIKDYAQSCLISTKEQLDSAEADYAKAYGILNKSKVILEKVTLNLSKEYDNPYLETLRELHKNTLLSLKSRIEQLNLTRLEFSPLDIKLNPGLLQSRSYKEVLLAKSELANIKWLSARVSKTLDIPLSNEVKPFNVQFSHLKDDNSAIDNDN 266          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: D1H001_9PHAE (Cytochrome oxidase 2 (Fragment) n=3 Tax=Ectocarpus fasciculatus TaxID=43935 RepID=D1H001_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.920e-58
Identity = 108/190 (56.84%), Postives = 135/190 (71.05%), Query Frame = 3
Query:  129 KISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN 698
            K+   ++ KG++           G +F      I S  LI  YAESCL +TK +LDGAE DY++A DIL+K + +L  V++DL+KDY+N  L TLR LHK T+LSL  RIEQ+NL R E SPLDIKL PGLLQS+SY+EVL+AK+ELANIKWL ARVAKTLDIPL +E KPFNVQFS+LK ++  S   N
Sbjct:   77 KLVLDRAEKGLSDAMLNSKTCYLGSVFENSSNEIDSDKLITDYAESCLISTKEQLDGAEADYAKAFDILNKSKVILDKVTLDLSKDYDNPYLGTLRELHKNTLLSLAGRIEQLNLTRSEFSPLDIKLNPGLLQSRSYKEVLIAKSELANIKWLSARVAKTLDIPLSNEVKPFNVQFSHLKDDNDNSIIDN 266          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: E6ZES9_ECTSI (Cytochrome-c oxidase n=4 Tax=Ectocarpus TaxID=2879 RepID=E6ZES9_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 7.750e-58
Identity = 109/191 (57.07%), Postives = 141/191 (73.82%), Query Frame = 3
Query:  126 FKISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN 698
            FK+   ++ KG++           G +    +  I S  LI  YA+SCL +TK +LDGAE DY++A DIL+K + +L+ V++DL+KDY+N  L TLR LHK T+LSL  RIEQ+NL RLELSPLDIKL PGLLQS+SY+EVLLAK+ELANIKWL ARV+KTLDIPL +E KPFNVQFS+L+ ++   D+SN
Sbjct:  855 FKLILDRAEKGLSDAMINSKTCYLGSVLENSLNDIDSNKLIKDYAQSCLVSTKEQLDGAEDDYAKAYDILNKSKVILEKVTLDLSKDYDNPYLGTLRELHKNTLLSLASRIEQLNLTRLELSPLDIKLNPGLLQSRSYKEVLLAKSELANIKWLSARVSKTLDIPLSNEVKPFNVQFSHLRDDNSGIDNSN 1045          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: A0A089MYN4_PETFA (Cytochrome-c oxidase n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089MYN4_PETFA)

HSP 1 Score: 187 bits (474), Expect = 6.170e-50
Identity = 105/191 (54.97%), Postives = 130/191 (68.06%), Query Frame = 3
Query:  129 KISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTE--SPTSDSS 695
            ++ F ++ KG+   +              + E I SK LI  YAE CL+    EL  AE DY +A  IL K + +L+ V+ DL+KDY+N  L+TLR LHK T LSL  R EQ+ L ++E SPLDIKLEPG+LQ KSY+EV+LAKAELANIKWL ARVAKTLDIPL +EAKPFNVQFS+L TE  S  SD+S
Sbjct:  875 ELIFNRAEKGLFDAKLNGTNGYLNSFLNNNFEDIDSKKLISDYAEICLNRANEELVDAEKDYEKAGRILHKTKKILEKVTSDLSKDYDNPHLNTLRNLHKNTSLSLKNRTEQLRLTQIESSPLDIKLEPGVLQLKSYKEVVLAKAELANIKWLAARVAKTLDIPLCEEAKPFNVQFSHLSTEGSSNVSDTS 1065          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: A0A0U1XFI4_SCYLO (Cytochrome-c oxidase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XFI4_SCYLO)

HSP 1 Score: 181 bits (458), Expect = 8.470e-48
Identity = 97/205 (47.32%), Postives = 138/205 (67.32%), Query Frame = 3
Query:   84 SKSFNLF*TR*FR*FKISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN 698
            SK+ + F     +  ++   ++ KG+   + +            + + I S  LI  YA+ CL+ T  E   AE DY +AS IL+K + +L  V++D++KDY+N  L+TLR LHK T LSL+  +E++ L ++E SPL+IKLEPG+LQ KSY+EV+LAKAELAN+KWL ARVAKTL+IPL DEAKPFNVQFS+L TE  ++ ++N
Sbjct:  853 SKALSNFNLEGSKISELILNRAEKGLAEAKIKGANDYLNMFLKDNFKDIDSNKLISDYADICLTRTNEESVDAEKDYEKASRILTKTKKILDKVTLDISKDYDNPYLETLRNLHKNTSLSLSNSVERLKLTQIEYSPLNIKLEPGVLQLKSYKEVILAKAELANVKWLAARVAKTLNIPLCDEAKPFNVQFSHLSTEDTSTSNNN 1057          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: A0A0U1XDJ3_9PHAE (Cytochrome-c oxidase n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XDJ3_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.160e-45
Identity = 91/186 (48.92%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  129 KISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTS 686
            ++  +++ KG+   +              + + + S  LI  YA+ CL +   EL  AE DY +AS +L+K + +L+ V+ DL+KDY+N  L+TLR LHK   LSL   I+Q+ L  +E SPL I+LEPG++QSKSY+EV+LAKAELAN KWL ARVAKTLDIPL +EAKPFNVQFS+L TE+ ++
Sbjct:  866 ELIVRRAEKGLIDAKINGTNGYLDLFLKTNFDSLNSNKLISDYADMCLLSAHEELIDAEKDYEKASRLLNKSKKILERVTFDLSKDYDNPYLETLRDLHKNIGLSLKNSIDQLRLTEIEFSPLKIRLEPGVIQSKSYKEVVLAKAELANTKWLAARVAKTLDIPLCEEAKPFNVQFSHLNTENSSN 1051          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: A0A3Q8QYF0_9PHAE (Cytochrome-c oxidase n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A3Q8QYF0_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.160e-45
Identity = 98/190 (51.58%), Postives = 126/190 (66.32%), Query Frame = 3
Query:  129 KISFKKSGKGVN*CETERYKWLFGFIFTRDMEFIKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKTESPTSDSSN 698
            ++   ++ KG+   ++             + + I S+ L+  YAE CL     EL  AE DY +A  IL K E +L+ V+ DL+K+Y+N  L TLR LHK T LSL   IEQ+ L ++E SPLDIKLEPG+LQ KSY+EV+LAKAELANIKWL ARVAKTLDIPL +EAKPFNVQFS+L  +    +SSN
Sbjct:  872 ELILDRAKKGLIEAKSNGTTNYLNSFLKNNFKDIDSEKLVSDYAEICLIRANEELIDAEKDYEKAGAILKKAEKILERVTSDLSKEYDNPYLGTLRNLHKNTSLSLKDSIEQLKLTQVESSPLDIKLEPGVLQLKSYKEVILAKAELANIKWLAARVAKTLDIPLCEEAKPFNVQFSHLSAK----ESSN 1057          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: A0A8F0K070_9PHAE (Cytochrome-c oxidase n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K070_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.390e-25
Identity = 72/162 (44.44%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  228 IKSKDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLAKDYNNS---CLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFS------YLKTESPTS 686
            I    L+ +Y   C+S  + EL GAE DY  A+DIL+K E++L  V+ D++   + +    +D L +L K    SL +  E +   +L L+PLDIKL PGLLQ+ SY+ V+ A AELA +KWL ARVAKTL+I L    KPFNV+F       YLK  + TS
Sbjct:  839 ISVPSLLYNYGNLCVSQAQQELAGAESDYLVAADILTKAENVLAEVTADISNHSDRAEKLYVDQLWLLGKDVAESLVKSREVLEESKLRLTPLDIKLSPGLLQAISYENVVNANAELAYVKWLSARVAKTLNITLLSSVKPFNVEFEDSSLMDYLKENNNTS 1000          
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Match: A0A3G5FPR2_9PHAE (Cytochrome-c oxidase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPR2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.610e-24
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 3
Query:  237 KDLIDSYAESCLSATKAELDGAEVDYSRASDILSKGESLLKAVSVDLA--KDYNNSCLDTLRVLHKKTVLSLTQRIEQVNLMRLELSPLDIKLEPGLLQSKSYQEVLLAKAELANIKWLCARVAKTLDIPLYDEAKPFNVQFSYLKT---ESPTSDSSN 698
            K L+D Y++ CL     E   A+V++ +   +L + E LL+   + L   K   +     L+ +HK     + +R  +   ++ + SPLDIKL PGLLQ KSY+ +L A++EL N KW+CAR+AKTLD+PL D  KPFNVQF +LK+     P +D+ N
Sbjct:  951 KRLLDFYSKKCLEGANEEYKEADVNFKKTISVLLEAEMLLREAELYLETPKVDLHPYFGELKEMHKTAFDDVVKRKNEYYALKEKFSPLDIKLSPGLLQLKSYKGLLNARSELENAKWVCARIAKTLDLPLSDNIKPFNVQFFHLKSLKSGKPCTDNDN 1109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1622.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
Q94YZ5_PYLLI1.100e-9687.89Cytochrome-c oxidase n=1 Tax=Pylaiella littoralis ... [more]
D1H013_ECTSI1.840e-5854.97Cytochrome oxidase 2 (Fragment) n=9 Tax=Ectocarpus... [more]
D1H001_9PHAE1.920e-5856.84Cytochrome oxidase 2 (Fragment) n=3 Tax=Ectocarpus... [more]
E6ZES9_ECTSI7.750e-5857.07Cytochrome-c oxidase n=4 Tax=Ectocarpus TaxID=2879... [more]
A0A089MYN4_PETFA6.170e-5054.97Cytochrome-c oxidase n=1 Tax=Petalonia fascia TaxI... [more]
A0A0U1XFI4_SCYLO8.470e-4847.32Cytochrome-c oxidase n=1 Tax=Scytosiphon lomentari... [more]
A0A0U1XDJ3_9PHAE1.160e-4548.92Cytochrome-c oxidase n=1 Tax=Colpomenia peregrina ... [more]
A0A3Q8QYF0_9PHAE1.160e-4551.58Cytochrome-c oxidase n=2 Tax=Endarachne binghamiae... [more]
A0A8F0K070_9PHAE1.390e-2544.44Cytochrome-c oxidase n=1 Tax=Chorda asiatica TaxID... [more]
A0A3G5FPR2_9PHAE1.610e-2440.25Cytochrome-c oxidase n=1 Tax=Cladosiphon okamuranu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1622contigP-littoralis_Contig1622:3..857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size855
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.7359972-UTR-P-littoralis_Contig1622:2..6261680789784.7359972-UTR-P-littoralis_Contig1622:2..626Pylaiella littoralis U1_48UTRP-littoralis_Contig1622 3..626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789784.7493176-CDS-P-littoralis_Contig1622:626..8571680789784.7493176-CDS-P-littoralis_Contig1622:626..857Pylaiella littoralis U1_48CDSP-littoralis_Contig1622 627..857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1622.1.1prot_P-littoralis_Contig1622.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1622 627..857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1622.1.1

>prot_P-littoralis_Contig1622.1.1 ID=prot_P-littoralis_Contig1622.1.1|Name=mRNA_P-littoralis_Contig1622.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MMRLNLLMYNSHILKLNPLRRIVAIDGDSTSDGNSGDKKKPKTEDEIKEI
LSKVSVIKTPDNLEELKTEIIHTFGHL
back to top

mRNA from alignment at P-littoralis_Contig1622:3..857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1622.1.1 ID=mRNA_P-littoralis_Contig1622.1.1|Name=mRNA_P-littoralis_Contig1622.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=855bp|location=Sequence derived from alignment at P-littoralis_Contig1622:3..857+ (Pylaiella littoralis U1_48)
CATTATGATATTGATGCCGAGATGTTAAAAAAAACTGATAATTATTTATC TGGTGTTAAATTAGAAATCGCCGAAGCGACCTATCTAAAAGCTTTAACTT GTTTTGAACTAGATAATTCAGATAATTCAAAATTAGTTTTAAAAAGAGCG GAAAAGGCGTTAACTAGTGCGAGACTGAAAGATACAAATGGTTATTCGGG TTTATCTTTACCCGCGATATGGAATTTATAAAGTCTAAAGATTTAATAGA TTCTTATGCGGAAAGTTGTTTAAGTGCTACTAAAGCCGAATTAGATGGCG CTGAAGTTGACTATTCTAGAGCTAGCGATATACTTTCTAAAGGGGAAAGT CTATTAAAAGCTGTTAGTGTGGATTTAGCAAAAGATTATAACAATTCTTG TTTAGATACGTTAAGAGTACTCCACAAAAAAACTGTTTTAAGCTTAACTC AACGAATAGAGCAGGTTAATTTAATGAGATTGGAGTTGTCACCATTAGAT ATTAAACTAGAACCAGGTCTTTTGCAGTCAAAATCCTACCAAGAGGTGTT GCTTGCTAAGGCTGAGCTGGCTAACATTAAATGGCTTTGCGCGCGAGTGG CCAAAACTTTAGATATTCCTTTATATGATGAGGCTAAACCTTTTAATGTA CAATTCTCATATCTTAAAACTGAATCCCCTACGTCGGATAGTAGCAATCG ATGGAGATTCTACGTCAGATGGTAACTCAGGCGATAAAAAAAAACCAAAA ACTGAAGATGAGATAAAAGAAATTTTATCTAAAGTTTCGGTTATAAAAAC TCCGGACAACTTAGAGGAATTAAAAACTGAAATTATACATACTTTTGGTC ATTTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1622:3..857+

>mRNA_P-littoralis_Contig1622.1.1 ID=mRNA_P-littoralis_Contig1622.1.1|Name=mRNA_P-littoralis_Contig1622.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig1622:3..857+ (Pylaiella littoralis U1_48)
ATGATGAGGCTAAACCTTTTAATGTACAATTCTCATATCTTAAAACTGAA
TCCCCTACGTCGGATAGTAGCAATCGATGGAGATTCTACGTCAGATGGTA
ACTCAGGCGATAAAAAAAAACCAAAAACTGAAGATGAGATAAAAGAAATT
TTATCTAAAGTTTCGGTTATAAAAACTCCGGACAACTTAGAGGAATTAAA
AACTGAAATTATACATACTTTTGGTCATTTA
back to top