mRNA_P-littoralis_Contig162.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig162.35.1
Unique NamemRNA_P-littoralis_Contig162.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 5.950e-84
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 1
Query:  100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF RRHPRVAERSTRIYEANRITE
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITE 137          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 8.260e-81
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 1
Query:  100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            MTRRKVDEE+VRKA AAID+G+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVGPETILS+EEEDSLEDILL++ARN+LAVDRVHLRDAVRRLCNDGRRIPWDPEKGP KDWL GFLRRHPRVAERSTRIYEANRITE
Sbjct:    1 MTRRKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITE 137          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 5.300e-80
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 1
Query:  100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF RRHPRVAERSTRIYEANRITE
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITE 137          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5K547_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K547_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 1.400e-79
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 1
Query:  100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            MTR KVDEE+VRKA AAID+G+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVGPETILS+EEEDSLEDILL++ARN+LAVDRVHLRDAVRRLCNDGRRIPWDPEKGP KDWL GFLRRHPRVAERST IYEANRITE
Sbjct:    1 MTRCKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTHIYEANRITE 137          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 1.320e-76
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 1
Query:  100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSI DRRRGK AMNAKVGPETILSKEEEDSLE ILL +ARN+LAVDRV+LRDAVRRLCNDGRRIPWDPEKGP KDWLAGFLRRH RVAERSTRI+EAN ITE
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIVDRRRGKAAMNAKVGPETILSKEEEDSLEYILLFAARNFLAVDRVYLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFLRRHLRVAERSTRIFEANMITE 137          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KQX7_9PHAE (HTH psq-type domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX7_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.930e-69
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 1
Query:  100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGF 444
            MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF
Sbjct:    1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGF 115          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.310e-67
Identity = 113/138 (81.88%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 VARRAFHPEIQPREPRQLPLLATLVVSLGFLLSMTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEK 414
            VAR+AFHPEIQPREP QLPLL T  VSL FLLS+TRRKVDEEQ+RK CAAIDDG+ V KAA VFGVGRTSIEDRRRG  AMN KV  ETILS EEEDSLEDILL +ARN+LAV RVHL+D VRRLCNDGRRIPWDPEK
Sbjct:   48 VARQAFHPEIQPREPPQLPLLVTFAVSLEFLLSITRRKVDEEQLRKVCAAIDDGMLVGKAAEVFGVGRTSIEDRRRGLAAMNPKVDTETILSNEEEDSLEDILLFAARNFLAVHRVHLKDGVRRLCNDGRRIPWDPEK 185          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 2.160e-65
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 1
Query:  163 VSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            +SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF RRHPRVAERSTRIYEANRITE
Sbjct:    1 MSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITE 116          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5L2E0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E0_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 3.510e-62
Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 1
Query:  163 VSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            +SVRKAA  FGVGRTSIEDRRRGKVAMNAKVGPETILS EEEDSLEDILL +ARN+LAVDRVHLRDAVRRLCNDGRRI WDP++GP KDWLAGFLRRHPRVAERSTRIYEANR+TE
Sbjct:    1 MSVRKAAEDFGVGRTSIEDRRRGKVAMNAKVGPETILSNEEEDSLEDILLFAARNFLAVDRVHLRDAVRRLCNDGRRIIWDPDEGPGKDWLAGFLRRHPRVAERSTRIYEANRMTE 116          
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KNQ5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ5_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.920e-58
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1
Query:  163 VSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
            +SVRKAA VFGVGRTSIEDR  GKVAMNAKVGPETILSKEE+  L+DILL +ARN+LAVDR+HL DAVR+LC+DGRRIPWDPEK P KDWLAGFLRRHPRVAERSTRIYEANRITE
Sbjct:    1 MSVRKAAEVFGVGRTSIEDRCPGKVAMNAKVGPETILSKEEDSLLKDILLFAARNFLAVDRLHLGDAVRQLCDDGRRIPWDPEKVPGKDWLAGFLRRHPRVAERSTRIYEANRITE 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRY4_9PHAE5.950e-8493.43HTH psq-type domain-containing protein n=4 Tax=Ect... [more]
A0A6H5KJ62_9PHAE8.260e-8191.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFM5_9PHAE5.300e-8093.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K547_9PHAE1.400e-7990.51HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JRA3_9PHAE1.320e-7690.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX7_9PHAE1.930e-6993.04HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5KN20_9PHAE1.310e-6781.88DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K4M5_9PHAE2.160e-6592.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2E0_9PHAE3.510e-6289.66DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNQ5_9PHAE3.920e-5885.34DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig162contigP-littoralis_Contig162:187579..188090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15715526
PFAMsDDE_1,HTH_Tnp_Tc5,HTH_psq
Model size514
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.96e-10
EggNOG OGs2CXPE@1|root,2RYUX@2759|Eukaryota,39MS3@33154|Opisthokonta,3CPBT@33208|Metazoa
DescriptionDDE superfamily endonuclease
Cds size510
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789782.0776978-CDS-P-littoralis_Contig162:187580..1880901680789782.0776978-CDS-P-littoralis_Contig162:187580..188090Pylaiella littoralis U1_48CDSP-littoralis_Contig162 187581..188090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig162.35.1prot_P-littoralis_Contig162.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig162 187581..188090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig162.35.1

>prot_P-littoralis_Contig162.35.1 ID=prot_P-littoralis_Contig162.35.1|Name=mRNA_P-littoralis_Contig162.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
VARRAFHPEIQPREPRQLPLLATLVVSLGFLLSMTRRKVDEEQVRKACAA
IDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLE
DILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLR
RHPRVAERSTRIYEANRITE
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mRNA from alignment at P-littoralis_Contig162:187579..188090-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig162.35.1 ID=mRNA_P-littoralis_Contig162.35.1|Name=mRNA_P-littoralis_Contig162.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=512bp|location=Sequence derived from alignment at P-littoralis_Contig162:187579..188090- (Pylaiella littoralis U1_48)
GTGGCACGCCGAGCATTCCACCCCGAGATACAGCCGAGGGAGCCCCGACA GCTCCCGCTGCTAGCCACCTTAGTCGTTTCCTTGGGATTCTTGCTAAGCA TGACCCGGCGCAAGGTGGACGAGGAGCAGGTTCGGAAAGCCTGTGCAGCG ATAGATGATGGCGTGTCGGTTAGGAAGGCTGCTGCGGTCTTCGGGGTAGG TCGTACGTCCATCGAAGACCGCCGCCGCGGCAAGGTGGCCATGAACGCGA AGGTTGGTCCCGAGACCATCCTAAGCAAAGAAGAGGAGGATTCGCTGGAA GATATTTTGCTGCTTTCTGCTCGCAACTACTTGGCTGTGGACCGGGTTCA CCTCAGAGATGCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCTT GGGATCCAGAGAAGGGTCCGGAGAAAGATTGGCTTGCGGGCTTCCTTCGT AGGCACCCACGGGTGGCGGAGCGCTCGACCCGCATCTACGAGGCAAACAG GATCACCGAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig162:187579..188090-

>mRNA_P-littoralis_Contig162.35.1 ID=mRNA_P-littoralis_Contig162.35.1|Name=mRNA_P-littoralis_Contig162.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig162:187579..188090- (Pylaiella littoralis U1_48)
GTGGCACGCCGAGCATTCCACCCCGAGATACAGCCGAGGGAGCCCCGACA
GCTCCCGCTGCTAGCCACCTTAGTCGTTTCCTTGGGATTCTTGCTAAGCA
TGACCCGGCGCAAGGTGGACGAGGAGCAGGTTCGGAAAGCCTGTGCAGCG
ATAGATGATGGCGTGTCGGTTAGGAAGGCTGCTGCGGTCTTCGGGGTAGG
TCGTACGTCCATCGAAGACCGCCGCCGCGGCAAGGTGGCCATGAACGCGA
AGGTTGGTCCCGAGACCATCCTAAGCAAAGAAGAGGAGGATTCGCTGGAA
GATATTTTGCTGCTTTCTGCTCGCAACTACTTGGCTGTGGACCGGGTTCA
CCTCAGAGATGCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCTT
GGGATCCAGAGAAGGGTCCGGAGAAAGATTGGCTTGCGGGCTTCCTTCGT
AGGCACCCACGGGTGGCGGAGCGCTCGACCCGCATCTACGAGGCAAACAG
GATCACCGAA
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