mRNA_P-littoralis_Contig162.35.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE) HSP 1 Score: 254 bits (648), Expect = 5.950e-84 Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 1
Query: 100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF RRHPRVAERSTRIYEANRITE
Sbjct: 1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITE 137
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE) HSP 1 Score: 251 bits (642), Expect = 8.260e-81 Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 1
Query: 100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
MTRRKVDEE+VRKA AAID+G+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVGPETILS+EEEDSLEDILL++ARN+LAVDRVHLRDAVRRLCNDGRRIPWDPEKGP KDWL GFLRRHPRVAERSTRIYEANRITE
Sbjct: 1 MTRRKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITE 137
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE) HSP 1 Score: 254 bits (648), Expect = 5.300e-80 Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 1
Query: 100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF RRHPRVAERSTRIYEANRITE
Sbjct: 1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITE 137
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5K547_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K547_9PHAE) HSP 1 Score: 246 bits (629), Expect = 1.400e-79 Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 1
Query: 100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
MTR KVDEE+VRKA AAID+G+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVGPETILS+EEEDSLEDILL++ARN+LAVDRVHLRDAVRRLCNDGRRIPWDPEKGP KDWL GFLRRHPRVAERST IYEANRITE
Sbjct: 1 MTRCKVDEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTHIYEANRITE 137
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE) HSP 1 Score: 244 bits (622), Expect = 1.320e-76 Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 1
Query: 100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSI DRRRGK AMNAKVGPETILSKEEEDSLE ILL +ARN+LAVDRV+LRDAVRRLCNDGRRIPWDPEKGP KDWLAGFLRRH RVAERSTRI+EAN ITE
Sbjct: 1 MTRRKVDEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIVDRRRGKAAMNAKVGPETILSKEEEDSLEYILLFAARNFLAVDRVYLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFLRRHLRVAERSTRIFEANMITE 137
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KQX7_9PHAE (HTH psq-type domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX7_9PHAE) HSP 1 Score: 215 bits (547), Expect = 1.930e-69 Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 1
Query: 100 MTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGF 444
MTRRKVDEEQVRKACAAIDDG+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF
Sbjct: 1 MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGF 115
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE) HSP 1 Score: 222 bits (565), Expect = 1.310e-67 Identity = 113/138 (81.88%), Postives = 120/138 (86.96%), Query Frame = 1
Query: 1 VARRAFHPEIQPREPRQLPLLATLVVSLGFLLSMTRRKVDEEQVRKACAAIDDGVSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEK 414
VAR+AFHPEIQPREP QLPLL T VSL FLLS+TRRKVDEEQ+RK CAAIDDG+ V KAA VFGVGRTSIEDRRRG AMN KV ETILS EEEDSLEDILL +ARN+LAV RVHL+D VRRLCNDGRRIPWDPEK
Sbjct: 48 VARQAFHPEIQPREPPQLPLLVTFAVSLEFLLSITRRKVDEEQLRKVCAAIDDGMLVGKAAEVFGVGRTSIEDRRRGLAAMNPKVDTETILSNEEEDSLEDILLFAARNFLAVHRVHLKDGVRRLCNDGRRIPWDPEK 185
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE) HSP 1 Score: 213 bits (541), Expect = 2.160e-65 Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 1
Query: 163 VSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
+SVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLEDILL +ARN+LAV RVHLRDAVRRLCNDGRRIPWDPEKGP KDWLAGF RRHPRVAERSTRIYEANRITE
Sbjct: 1 MSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITE 116
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5L2E0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E0_9PHAE) HSP 1 Score: 208 bits (529), Expect = 3.510e-62 Identity = 104/116 (89.66%), Postives = 110/116 (94.83%), Query Frame = 1
Query: 163 VSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
+SVRKAA FGVGRTSIEDRRRGKVAMNAKVGPETILS EEEDSLEDILL +ARN+LAVDRVHLRDAVRRLCNDGRRI WDP++GP KDWLAGFLRRHPRVAERSTRIYEANR+TE
Sbjct: 1 MSVRKAAEDFGVGRTSIEDRRRGKVAMNAKVGPETILSNEEEDSLEDILLFAARNFLAVDRVHLRDAVRRLCNDGRRIIWDPDEGPGKDWLAGFLRRHPRVAERSTRIYEANRMTE 116
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Match: A0A6H5KNQ5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ5_9PHAE) HSP 1 Score: 196 bits (499), Expect = 3.920e-58 Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1
Query: 163 VSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLLSARNYLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPEKDWLAGFLRRHPRVAERSTRIYEANRITE 510
+SVRKAA VFGVGRTSIEDR GKVAMNAKVGPETILSKEE+ L+DILL +ARN+LAVDR+HL DAVR+LC+DGRRIPWDPEK P KDWLAGFLRRHPRVAERSTRIYEANRITE
Sbjct: 1 MSVRKAAEVFGVGRTSIEDRCPGKVAMNAKVGPETILSKEEDSLLKDILLFAARNFLAVDRLHLGDAVRQLCDDGRRIPWDPEKVPGKDWLAGFLRRHPRVAERSTRIYEANRITE 116 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig162.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig162.35.1 >prot_P-littoralis_Contig162.35.1 ID=prot_P-littoralis_Contig162.35.1|Name=mRNA_P-littoralis_Contig162.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp VARRAFHPEIQPREPRQLPLLATLVVSLGFLLSMTRRKVDEEQVRKACAAback to top mRNA from alignment at P-littoralis_Contig162:187579..188090- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig162.35.1 ID=mRNA_P-littoralis_Contig162.35.1|Name=mRNA_P-littoralis_Contig162.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=512bp|location=Sequence derived from alignment at P-littoralis_Contig162:187579..188090- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig162:187579..188090- >mRNA_P-littoralis_Contig162.35.1 ID=mRNA_P-littoralis_Contig162.35.1|Name=mRNA_P-littoralis_Contig162.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig162:187579..188090- (Pylaiella littoralis U1_48)back to top |