mRNA_P-littoralis_Contig1611.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI) HSP 1 Score: 272 bits (695), Expect = 3.730e-87 Identity = 162/265 (61.13%), Postives = 180/265 (67.92%), Query Frame = 1
Query: 1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHPLCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
FKEVNRFL RGPHEPRVFAVDGSKVHVHP ++ V RP + SS KT +C + + + K + A E L +C KGDTLV+DRGYYSK+L++ + VWRLKINAFKGTR FF EATCLILG+ ARL+KYFI+GKTYVCLTND SL RRDIK MYASRWRVEE KRLK NLKLEKAHAK P EVEAR LDTITLRLQ+ IKEPSYIYTLDTYVTHIL NVK
Sbjct: 74 FKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNNKPVPRPAKRPLVMLSSMVDVKTKAC-VDFELTKHFNERKAATEML-----------RCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESLKRLKSNLKLEKAHAKTPALYIQ--EVEARVLLDTITLRLQKSIKEPSYIYTLDTYVTHILNNVK 324
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI) HSP 1 Score: 261 bits (668), Expect = 3.830e-83 Identity = 160/266 (60.15%), Postives = 185/266 (69.55%), Query Frame = 1
Query: 1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHP-LCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
FKEVNRFL RGPHEPRVFAVDGSKVHVHP ++ V RP + SS KT +C + + + K + A E L+ G R KGDTLV+DRGYYSK+L++ + VWRLKI+AFKGTRSFF EA CLILGI ARL+KYFI+GKTYVCLTNDPSL RRDIKTMYASRWRVEE FKRLK NL+LEKAHA+ P L ++ EVEAR LDTITLR+Q KE SY+YTLDT+VT+ILRNVK
Sbjct: 74 FKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKAC-VDFELTKHFNERKAATEMLR---GVR--------KGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQ---EVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVK 324
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 272 bits (696), Expect = 3.910e-83 Identity = 161/265 (60.75%), Postives = 182/265 (68.68%), Query Frame = 1
Query: 1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHPLCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
FKEVNRFLHRGPHEPRVFAVDGSKVHVHP + V+RP + SS KT +C + + + K H +R S + + KGDTL++DRGYYSKDL++ + VWRLKI+AFKGTRSFF EA CLILGI ARL+KYFI+GKTYVCLTNDPSL RRDIKTMYASRWRVEE FKRLK NLKLEKAHAK P EVEAR LDTITLR+Q KE SY+YTLDT+VTHILRNVK
Sbjct: 89 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKAC-IDFELTK--------HFNERRAATSML---RSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQ--EVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVK 339
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K) HSP 1 Score: 259 bits (663), Expect = 4.080e-82 Identity = 155/266 (58.27%), Postives = 182/266 (68.42%), Query Frame = 1
Query: 1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHP-LCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
FKEVNRFLHRGPHEPRVFAVDGSKVHVHP + V+RP + SS KT +C + + + K H +R S + + KGDTL++DRGYYSKDL+ + VWRLKI+AF+GTRSFF EATCLILG+ ARL+KYFI+GKTYVCLT DPSL R IKTMYASRWRVEE FKRLK NL+LEKAHA+ P L ++ EVEAR LDTITLR+Q KE SY+YTLDT+VT+ILRNVK
Sbjct: 74 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKAC-IDFELTK--------HFNERRAATSML---RSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSFFNSCRTEATCLILGVKARLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQ---EVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVK 324
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 228 bits (580), Expect = 6.140e-66 Identity = 143/265 (53.96%), Postives = 165/265 (62.26%), Query Frame = 1
Query: 1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHPLCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
FKEVNRFLHRGPHEPR+FA+DGSKVHVHP + V RP + SS +T SC + + + K H +R S + + K DTL++DRGYYSKDL++ + VWRL+I CLILG+ RL+KYFI GKTYVCLTNDPSL RRDIKTMYA RWRVEE FKRLK NLKLEKAHAK P EVEAR LDTITLR+Q KE SY+YTLDT+VTHILRNVK
Sbjct: 74 FKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSC-IDFELTK--------HFDERRAAVSML---RSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRIMP----------------CLILGVRVRLLKYFIKGKTYVCLTNDPSLSRRDIKTMYAWRWRVEESFKRLKSNLKLEKAHAKTPALYIQ--EVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVK 308
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE) HSP 1 Score: 188 bits (477), Expect = 4.640e-56 Identity = 122/242 (50.41%), Postives = 145/242 (59.92%), Query Frame = 1
Query: 1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LTCV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHP-LCVEDTVEVEARASLDTITLRLQR 684
FKEVNRFLH+GPHEPRVFAVDGSKVHVHP + V RP + SS KT +C + + + K + E+GSRI K D+ + VWRLKINAFKGT+SF E TCLILG+ +RL+KY INGKTYVCLTNDP+L RRDIK +YASRWR E+ RLK N++LEKAHA+ P L ++ EVEAR LDTITLRLQR
Sbjct: 23 FKEVNRFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKSPLVMLSSMVDVKTKAC-VDFELTKHFN-----------EDGSRIYTQKLRSIHDSQAFG------------------VWRLKINAFKGTKSFISSWRTETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQ---EVEARVLLDTITLRLQR 230 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1611.1.1 >prot_P-littoralis_Contig1611.1.1 ID=prot_P-littoralis_Contig1611.1.1|Name=mRNA_P-littoralis_Contig1611.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp MKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAback to top mRNA from alignment at P-littoralis_Contig1611:507..1259- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1611.1.1 ID=mRNA_P-littoralis_Contig1611.1.1|Name=mRNA_P-littoralis_Contig1611.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=753bp|location=Sequence derived from alignment at P-littoralis_Contig1611:507..1259- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1611:507..1259- >mRNA_P-littoralis_Contig1611.1.1 ID=mRNA_P-littoralis_Contig1611.1.1|Name=mRNA_P-littoralis_Contig1611.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig1611:507..1259- (Pylaiella littoralis U1_48)back to top |