mRNA_P-littoralis_Contig1611.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1611.1.1
Unique NamemRNA_P-littoralis_Contig1611.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 3.730e-87
Identity = 162/265 (61.13%), Postives = 180/265 (67.92%), Query Frame = 1
Query:    1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHPLCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
            FKEVNRFL RGPHEPRVFAVDGSKVHVHP           ++  V RP +      SS    KT +C + + + K  +    A E L           +C  KGDTLV+DRGYYSK+L++    +    VWRLKINAFKGTR FF     EATCLILG+ ARL+KYFI+GKTYVCLTND SL RRDIK MYASRWRVEE  KRLK NLKLEKAHAK P       EVEAR  LDTITLRLQ+ IKEPSYIYTLDTYVTHIL NVK
Sbjct:   74 FKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNNKPVPRPAKRPLVMLSSMVDVKTKAC-VDFELTKHFNERKAATEML-----------RCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESLKRLKSNLKLEKAHAKTPALYIQ--EVEARVLLDTITLRLQKSIKEPSYIYTLDTYVTHILNNVK 324          
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 3.830e-83
Identity = 160/266 (60.15%), Postives = 185/266 (69.55%), Query Frame = 1
Query:    1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHP-LCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
            FKEVNRFL RGPHEPRVFAVDGSKVHVHP           ++  V RP +      SS    KT +C + + + K  +    A E L+   G R        KGDTLV+DRGYYSK+L++    +    VWRLKI+AFKGTRSFF     EA CLILGI ARL+KYFI+GKTYVCLTNDPSL RRDIKTMYASRWRVEE FKRLK NL+LEKAHA+ P L ++   EVEAR  LDTITLR+Q   KE SY+YTLDT+VT+ILRNVK
Sbjct:   74 FKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKAC-VDFELTKHFNERKAATEMLR---GVR--------KGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQ---EVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVK 324          
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 3.910e-83
Identity = 161/265 (60.75%), Postives = 182/265 (68.68%), Query Frame = 1
Query:    1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHPLCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
            FKEVNRFLHRGPHEPRVFAVDGSKVHVHP           +   V+RP +      SS    KT +C + + + K        H   +R   S +   +   KGDTL++DRGYYSKDL++    +    VWRLKI+AFKGTRSFF     EA CLILGI ARL+KYFI+GKTYVCLTNDPSL RRDIKTMYASRWRVEE FKRLK NLKLEKAHAK P       EVEAR  LDTITLR+Q   KE SY+YTLDT+VTHILRNVK
Sbjct:   89 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKAC-IDFELTK--------HFNERRAATSML---RSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQ--EVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVK 339          
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K)

HSP 1 Score: 259 bits (663), Expect = 4.080e-82
Identity = 155/266 (58.27%), Postives = 182/266 (68.42%), Query Frame = 1
Query:    1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHP-LCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
            FKEVNRFLHRGPHEPRVFAVDGSKVHVHP           +   V+RP +      SS    KT +C + + + K        H   +R   S +   +   KGDTL++DRGYYSKDL+     +    VWRLKI+AF+GTRSFF     EATCLILG+ ARL+KYFI+GKTYVCLT DPSL R  IKTMYASRWRVEE FKRLK NL+LEKAHA+ P L ++   EVEAR  LDTITLR+Q   KE SY+YTLDT+VT+ILRNVK
Sbjct:   74 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKAC-IDFELTK--------HFNERRAATSML---RSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSFFNSCRTEATCLILGVKARLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQ---EVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVK 324          
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 6.140e-66
Identity = 143/265 (53.96%), Postives = 165/265 (62.26%), Query Frame = 1
Query:    1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LT-CV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHPLCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRNVK 753
            FKEVNRFLHRGPHEPR+FA+DGSKVHVHP           +   V RP +      SS    +T SC + + + K        H   +R   S +   +   K DTL++DRGYYSKDL++    +    VWRL+I                  CLILG+  RL+KYFI GKTYVCLTNDPSL RRDIKTMYA RWRVEE FKRLK NLKLEKAHAK P       EVEAR  LDTITLR+Q   KE SY+YTLDT+VTHILRNVK
Sbjct:   74 FKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSC-IDFELTK--------HFDERRAAVSML---RSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRIMP----------------CLILGVRVRLLKYFIKGKTYVCLTNDPSLSRRDIKTMYAWRWRVEESFKRLKSNLKLEKAHAKTPALYIQ--EVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVK 308          
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 4.640e-56
Identity = 122/242 (50.41%), Postives = 145/242 (59.92%), Query Frame = 1
Query:    1 FKEVNRFLHRGPHEPRVFAVDGSKVHVHPP----------SSVRVTRPDE**ASTASS*---KTSSCSLRW*MWKPEHAWT*AHETLQREEGSRIDAPKCTGKGDTLVYDRGYYSKDLVQCS*LTCV*VWRLKINAFKGTRSFFQFVENEATCLILGIWARLMKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKAHAKHP-LCVEDTVEVEARASLDTITLRLQR 684
            FKEVNRFLH+GPHEPRVFAVDGSKVHVHP           +   V RP +      SS    KT +C + + + K  +           E+GSRI   K     D+  +                   VWRLKINAFKGT+SF      E TCLILG+ +RL+KY INGKTYVCLTNDP+L RRDIK +YASRWR E+   RLK N++LEKAHA+ P L ++   EVEAR  LDTITLRLQR
Sbjct:   23 FKEVNRFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKSPLVMLSSMVDVKTKAC-VDFELTKHFN-----------EDGSRIYTQKLRSIHDSQAFG------------------VWRLKINAFKGTKSFISSWRTETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQ---EVEARVLLDTITLRLQR 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1611.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LP60_ECTSI3.730e-8761.13EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
D8LP47_ECTSI3.830e-8360.15EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K772_9PHAE3.910e-8360.75DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
Q8QNB6_ESV1K4.080e-8258.27EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JA56_9PHAE6.140e-6653.96DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0K9_9PHAE4.640e-5650.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1611contigP-littoralis_Contig1611:507..1259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size753
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.6445076-CDS-P-littoralis_Contig1611:506..8121680789779.6445076-CDS-P-littoralis_Contig1611:506..812Pylaiella littoralis U1_48CDSP-littoralis_Contig1611 507..812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.6541562-UTR-P-littoralis_Contig1611:812..12591680789779.6541562-UTR-P-littoralis_Contig1611:812..1259Pylaiella littoralis U1_48UTRP-littoralis_Contig1611 813..1259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1611.1.1prot_P-littoralis_Contig1611.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1611 507..812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1611.1.1

>prot_P-littoralis_Contig1611.1.1 ID=prot_P-littoralis_Contig1611.1.1|Name=mRNA_P-littoralis_Contig1611.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MKYFINGKTYVCLTNDPSLPRRDIKTMYASRWRVEEPFKRLKLNLKLEKA
HAKHPLCVEDTVEVEARASLDTITLRLQRQIKEPSYIYTLDTYVTHILRN
VK
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mRNA from alignment at P-littoralis_Contig1611:507..1259-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1611.1.1 ID=mRNA_P-littoralis_Contig1611.1.1|Name=mRNA_P-littoralis_Contig1611.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=753bp|location=Sequence derived from alignment at P-littoralis_Contig1611:507..1259- (Pylaiella littoralis U1_48)
TTTAAGGAGGTGAATCGGTTTTTACACCGAGGACCGCATGAACCACGTGT TTTTGCTGTTGATGGTTCGAAGGTGCACGTTCACCCTCCTTCATCGGTGC GGGTTACAAGACCCGACGAATGATAAGCCAGTACCGCGTCCAGCTAAAAG ACCTCGTCATGCTCTCTTCGATGGTAGATGTGGAAACCAGAGCATGCGTG GACTTGAGCTCACGAAACACTTCAACGAGAGGAAGGCAGCCGTATCGATG CTCCGAAGTGTACGGGAAAAGGTGACACGCTAGTGTATGACAGAGGCTAC TACTCCAAAGACTTGGTGCAGTGTTCATGACTCACATGCGTTTGAGTTTG GCGGTTGAAGATAAATGCGTTCAAGGGCACGAGGTCATTTTTTCAATTCG TGGAAAACGAAGCTACCTGCCTTATTCTTGGCATCTGGGCTCGTCTCATG AAATACTTCATCAACGGCAAAACATATGTTTGCCTGACGAACGACCCGTC GTTGCCTCGGAGAGATATCAAAACCATGTATGCATCAAGGTGGAGGGTCG AGGAGCCCTTCAAACGATTGAAACTCAACCTCAAGCTTGAAAAAGCTCAC GCAAAACACCCGCTCTGTGTAGAAGATACGGTGGAAGTGGAGGCCAGAGC CTCGCTCGACACGATCACCCTGAGGTTACAGAGACAGATAAAGGAGCCAT CGTATATTTACACACTTGATACATACGTAACACACATCCTCCGTAACGTC AAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1611:507..1259-

>mRNA_P-littoralis_Contig1611.1.1 ID=mRNA_P-littoralis_Contig1611.1.1|Name=mRNA_P-littoralis_Contig1611.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig1611:507..1259- (Pylaiella littoralis U1_48)
ATGAAATACTTCATCAACGGCAAAACATATGTTTGCCTGACGAACGACCC
GTCGTTGCCTCGGAGAGATATCAAAACCATGTATGCATCAAGGTGGAGGG
TCGAGGAGCCCTTCAAACGATTGAAACTCAACCTCAAGCTTGAAAAAGCT
CACGCAAAACACCCGCTCTGTGTAGAAGATACGGTGGAAGTGGAGGCCAG
AGCCTCGCTCGACACGATCACCCTGAGGTTACAGAGACAGATAAAGGAGC
CATCGTATATTTACACACTTGATACATACGTAACACACATCCTCCGTAAC
GTCAAA
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