mRNA_P-littoralis_Contig161.72.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JK30_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK30_9PHAE) HSP 1 Score: 162 bits (410), Expect = 5.150e-43 Identity = 107/252 (42.46%), Postives = 148/252 (58.73%), Query Frame = 3
Query: 102 MRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLANVEELLW-DKNKDDGEGVAADEPGAA--EDGEGAKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNE 848
M+STLL R+KRCL R WTRR+ARL K NR + L+ RV+ EER+ ++ RLR CLL ++ LL+ D+ D + A D AA E GE A VS Q +RLY+Q + VL++ EEE RD LI H A L AH ++ S AQ+KAA+++A + ++ AS+VR NS LLIAE++++ + +REWI+ E+DLS+ L+WLKAQKRVTT+ KF+NE
Sbjct: 1 MKSTLLTTREKRCLQRAWTRREARLDKNFQNRHSNLKRRVQAFEERVTNNAGHITRLRSCLLGDISNLLFNDEQSGDDDEDARDTADAAAVEGGEDATVSKAQLSRLYSQAMVVLEVLEEERTRDLLISMHTSAAYRALCTAHDSSKSFAQVKAAEDVATEAMDEASIVRLDNSLLLIAEKSAKDV----------------------------LCKREWIMTEDDLSLAFLDWLKAQKRVTTQKAWKFINE 224
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE) HSP 1 Score: 159 bits (402), Expect = 7.400e-40 Identity = 113/328 (34.45%), Postives = 181/328 (55.18%), Query Frame = 3
Query: 3 GKSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLA-NVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINV*MRKLGCKHDRV 968
GKS+ SLG LNAV+ R +KR R G + + A + + L R++R + RGW++R+ +L + R +YL R+ ++ ++ + + RR+ + ++ LL EG A + A +GE +VS TQ RL+ Q + L + +EE RD L+ ++A + ++++ + PA +KAA+ ++L AS R ++S L IA R + R ++ T L W R FR F RD RGV ER+WI++EEDL EL+ W++ QKR+T K ++N+ L A E G + RL Y ++LP+S T + + LGCK D V
Sbjct: 120 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIGSNEQHIRRIEDAMAEQDLASLLAPLPPSPIEGNADVDARACTEGEDNQSKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDESY--TTIPA-VKAAEAKRFEVLIEASRRRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWIIALGCKKDVV 444
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE) HSP 1 Score: 154 bits (388), Expect = 7.360e-38 Identity = 111/343 (32.36%), Postives = 178/343 (51.90%), Query Frame = 3
Query: 6 KSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKC--------LLANVEELLWDKNKDDGEGVAADEPGAAEDGEGAKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINV*MRKLGCKHDRVKQSYYSEGHERPD 1007
KS+ SLG LNAV+ R++KR R G + + A + L R++ + RGW+ R+ +L + R +YL R+ +++ + + RR+ + LLA + ++N+D AR Y + EEE RD LE ++A + ++++ + PA +KAA+ +LL AS R ++S L IA R + R ++ T L W R FR F RD RGV ER+WI++EEDL +L+ W++ QKR+T K ++N+ L A E G + RL Y ++LP+S T + M LGCK++R +S+Y++GHE+ D
Sbjct: 119 KSRNSLGKLNAVEERKFKRQRLAGSDATSAGLTLDSTLSRRERYSVARGWSNREGKLRRDFDKRGSYLGNRIYVQTSQIESNEQHIRRIEEAMAEQDLASLLAPLPPSPIERNED------------------------VDARAYTEGEDN-QYKEEERKRDLRQLELTQQAKSLSDESYM--TIPA-VKAAEAKRFELLIEASRPRHESSLLQIAARVNSAGSRVYAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKD 433
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.510e-34 Identity = 109/339 (32.15%), Postives = 173/339 (51.03%), Query Frame = 3
Query: 6 KSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLANVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINV*MRKLGCKHDRVKQSYYSEGHERPD 1007
KS+ SLG LNAV+ R +KR R G + + A + + L R++R + + ++E+ + E ++ LL EG A + A +GE +VS TQ RL+ Q + L + +EE RD L+ ++A + ++++ + PA +KAA+ +LL AS +R ++S L IA R + R ++ T L W R FR RD RGV ER+WI++EEDL EL+ W++ QKR+T K ++N+ L A E G + RL Y ++LP+S T + M LGCK++R +S+Y++GHE+ D
Sbjct: 81 KSRDSLGKLNAVEERNFKRQRLAGSDATRAGFTPESTLSRRERRSIESNEQH-------------------IRRIEDAMAEQ-------------DLASLLAPLPPSPIEGNAEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDESY--TTIPA-VKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGSKRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKD 384
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.780e-13 Identity = 71/231 (30.74%), Postives = 123/231 (53.25%), Query Frame = 3
Query: 3 GKSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLA-NVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFL 680
GKS+ SLG LNAV+ R +KR R G + + A + + L R++R + RGW++R+ +L + R +YL R+ ++ +++ + + RR+ + + ++ LL EG A + A +GE +VS TQ RL+ Q + L + +EE RD LE ++A + ++++ + PA +KAA+ +LL AS R ++S L IA R + R ++ T L
Sbjct: 110 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIESNEQHIRRIEEAMAEQDLASLLAPLPPSPIEGNAEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKSLSDESY--TTIPA-VKAAEAKRFELLNEASRRRHESSLLRIAARVNSAGSRVYAASTIL 337
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 3.930e-6 Identity = 46/156 (29.49%), Postives = 83/156 (53.21%), Query Frame = 3
Query: 15 RSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLA-NVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRD 467
+SLG LNAV+ R++KR R G + + A + + L R++R + RGW++R+ +L + R +YL R+ ++ +++ + + RR+ + + ++ LL EG A + A +GE +VS TQ RL+ Q + L + +EE D
Sbjct: 102 KSLGKLNAVEERKFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIESNEQHIRRIEEAMAEQDLANLLAPLPPSPIEGNADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKHD 257 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig161.72.1 >prot_P-littoralis_Contig161.72.1 ID=prot_P-littoralis_Contig161.72.1|Name=mRNA_P-littoralis_Contig161.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp MRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESback to top mRNA from alignment at P-littoralis_Contig161:304535..305541+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig161.72.1 ID=mRNA_P-littoralis_Contig161.72.1|Name=mRNA_P-littoralis_Contig161.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1007bp|location=Sequence derived from alignment at P-littoralis_Contig161:304535..305541+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig161:304535..305541+ >mRNA_P-littoralis_Contig161.72.1 ID=mRNA_P-littoralis_Contig161.72.1|Name=mRNA_P-littoralis_Contig161.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig161:304535..305541+ (Pylaiella littoralis U1_48)back to top |