mRNA_P-littoralis_Contig161.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig161.72.1
Unique NamemRNA_P-littoralis_Contig161.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JK30_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK30_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 5.150e-43
Identity = 107/252 (42.46%), Postives = 148/252 (58.73%), Query Frame = 3
Query:  102 MRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLANVEELLW-DKNKDDGEGVAADEPGAA--EDGEGAKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNE 848
            M+STLL  R+KRCL R WTRR+ARL K   NR + L+ RV+  EER+  ++    RLR CLL ++  LL+ D+   D +  A D   AA  E GE A VS  Q +RLY+Q + VL++ EEE  RD LI  H   A   L  AH ++ S AQ+KAA+++A + ++ AS+VR  NS LLIAE++++                              + +REWI+ E+DLS+  L+WLKAQKRVTT+   KF+NE
Sbjct:    1 MKSTLLTTREKRCLQRAWTRREARLDKNFQNRHSNLKRRVQAFEERVTNNAGHITRLRSCLLGDISNLLFNDEQSGDDDEDARDTADAAAVEGGEDATVSKAQLSRLYSQAMVVLEVLEEERTRDLLISMHTSAAYRALCTAHDSSKSFAQVKAAEDVATEAMDEASIVRLDNSLLLIAEKSAKDV----------------------------LCKREWIMTEDDLSLAFLDWLKAQKRVTTQKAWKFINE 224          
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 7.400e-40
Identity = 113/328 (34.45%), Postives = 181/328 (55.18%), Query Frame = 3
Query:    3 GKSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLA-NVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINV*MRKLGCKHDRV 968
            GKS+ SLG LNAV+ R +KR R  G + + A +   + L  R++R + RGW++R+ +L +    R +YL  R+ ++  ++  + +  RR+   +   ++  LL        EG A  +  A  +GE      +VS TQ  RL+ Q  + L + +EE  RD   L+  ++A  + ++++   + PA +KAA+    ++L  AS  R ++S L IA R +    R ++  T L W R FR    F RD RGV ER+WI++EEDL  EL+ W++ QKR+T K    ++N+ L A E G + RL  Y ++LP+S  T +  +  LGCK D V
Sbjct:  120 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIGSNEQHIRRIEDAMAEQDLASLLAPLPPSPIEGNADVDARACTEGEDNQSKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDESY--TTIPA-VKAAEAKRFEVLIEASRRRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWIIALGCKKDVV 444          
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 7.360e-38
Identity = 111/343 (32.36%), Postives = 178/343 (51.90%), Query Frame = 3
Query:    6 KSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKC--------LLANVEELLWDKNKDDGEGVAADEPGAAEDGEGAKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINV*MRKLGCKHDRVKQSYYSEGHERPD 1007
            KS+ SLG LNAV+ R++KR R  G + + A     + L  R++  + RGW+ R+ +L +    R +YL  R+     +++ + +  RR+ +         LLA +     ++N+D                          AR Y +        EEE  RD   LE  ++A  + ++++   + PA +KAA+    +LL  AS  R ++S L IA R +    R ++  T L W R FR    F RD RGV ER+WI++EEDL  +L+ W++ QKR+T K    ++N+ L A E G + RL  Y ++LP+S  T +  M  LGCK++R  +S+Y++GHE+ D
Sbjct:  119 KSRNSLGKLNAVEERKFKRQRLAGSDATSAGLTLDSTLSRRERYSVARGWSNREGKLRRDFDKRGSYLGNRIYVQTSQIESNEQHIRRIEEAMAEQDLASLLAPLPPSPIERNED------------------------VDARAYTEGEDN-QYKEEERKRDLRQLELTQQAKSLSDESYM--TIPA-VKAAEAKRFELLIEASRPRHESSLLQIAARVNSAGSRVYAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKD 433          
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.510e-34
Identity = 109/339 (32.15%), Postives = 173/339 (51.03%), Query Frame = 3
Query:    6 KSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLANVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINV*MRKLGCKHDRVKQSYYSEGHERPD 1007
            KS+ SLG LNAV+ R +KR R  G + + A +   + L  R++R +                         + ++E+ + E              ++  LL        EG A  +  A  +GE      +VS TQ  RL+ Q  + L + +EE  RD   L+  ++A  + ++++   + PA +KAA+    +LL  AS +R ++S L IA R +    R ++  T L W R FR      RD RGV ER+WI++EEDL  EL+ W++ QKR+T K    ++N+ L A E G + RL  Y ++LP+S  T +  M  LGCK++R  +S+Y++GHE+ D
Sbjct:   81 KSRDSLGKLNAVEERNFKRQRLAGSDATRAGFTPESTLSRRERRSIESNEQH-------------------IRRIEDAMAEQ-------------DLASLLAPLPPSPIEGNAEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDESY--TTIPA-VKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGSKRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKD 384          
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.780e-13
Identity = 71/231 (30.74%), Postives = 123/231 (53.25%), Query Frame = 3
Query:    3 GKSQRSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLA-NVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIKAADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFL 680
            GKS+ SLG LNAV+ R +KR R  G + + A +   + L  R++R + RGW++R+ +L +    R +YL  R+ ++  +++ + +  RR+ + +   ++  LL        EG A  +  A  +GE      +VS TQ  RL+ Q  + L + +EE  RD   LE  ++A  + ++++   + PA +KAA+    +LL  AS  R ++S L IA R +    R ++  T L
Sbjct:  110 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIESNEQHIRRIEEAMAEQDLASLLAPLPPSPIEGNAEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKSLSDESY--TTIPA-VKAAEAKRFELLNEASRRRHESSLLRIAARVNSAGSRVYAASTIL 337          
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.930e-6
Identity = 46/156 (29.49%), Postives = 83/156 (53.21%), Query Frame = 3
Query:   15 RSLGVLNAVQSRQYKRHRFEGGELSPAEWMRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKESSRSTRRLRKCLLA-NVEELLWDKNKDDGEGVAADEPGAAEDGEG----AKVSPTQKARLYAQTVAVLDITEEEILRD 467
            +SLG LNAV+ R++KR R  G + + A +   + L  R++R + RGW++R+ +L +    R +YL  R+ ++  +++ + +  RR+ + +   ++  LL        EG A  +  A  +GE      +VS TQ  RL+ Q  + L + +EE   D
Sbjct:  102 KSLGKLNAVEERKFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIESNEQHIRRIEEAMAEQDLANLLAPLPPSPIEGNADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKHD 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JK30_9PHAE5.150e-4342.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUI4_9PHAE7.400e-4034.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE7.360e-3832.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE1.510e-3432.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE2.780e-1330.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE3.930e-629.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:304535..305541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1007
Hectar predicted targeting categorymitochondrion
Exons1
Cds size834
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789778.9986491-UTR-P-littoralis_Contig161:304534..3046351680789778.9986491-UTR-P-littoralis_Contig161:304534..304635Pylaiella littoralis U1_48UTRP-littoralis_Contig161 304535..304635 +
1680789779.0235326-UTR-P-littoralis_Contig161:305469..3055411680789779.0235326-UTR-P-littoralis_Contig161:305469..305541Pylaiella littoralis U1_48UTRP-littoralis_Contig161 305470..305541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789779.0098977-CDS-P-littoralis_Contig161:304635..3054691680789779.0098977-CDS-P-littoralis_Contig161:304635..305469Pylaiella littoralis U1_48CDSP-littoralis_Contig161 304636..305469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.72.1prot_P-littoralis_Contig161.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig161 304636..305469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig161.72.1

>prot_P-littoralis_Contig161.72.1 ID=prot_P-littoralis_Contig161.72.1|Name=mRNA_P-littoralis_Contig161.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp
MRSTLLKVRQKRCLTRGWTRRQARLGKKAGNRLAYLRFRVEQVEERLKES
SRSTRRLRKCLLANVEELLWDKNKDDGEGVAADEPGAAEDGEGAKVSPTQ
KARLYAQTVAVLDITEEEILRDQLILEHNKEALEVLEKAHKAASSPAQIK
AADELAGKLLETASLVRFQNSFLLIAERASEKAERRFSPETFLAWRRQFR
KLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEV
LLAREGGVLRLAKYGLSLPISTTTINV*
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mRNA from alignment at P-littoralis_Contig161:304535..305541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig161.72.1 ID=mRNA_P-littoralis_Contig161.72.1|Name=mRNA_P-littoralis_Contig161.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1007bp|location=Sequence derived from alignment at P-littoralis_Contig161:304535..305541+ (Pylaiella littoralis U1_48)
CAGGTAAATCGCAACGAAGCCTGGGTGTGCTGAACGCAGTGCAATCGCGT CAGTACAAGAGGCACCGCTTCGAAGGAGGGGAGCTCTCGCCCGCGGAATG GATGAGGTCTACGCTTCTGAAGGTGCGTCAGAAGCGGTGTCTTACCCGGG GATGGACCAGGAGACAGGCAAGGCTCGGCAAGAAAGCGGGCAACCGACTG GCGTATCTCAGGTTTAGGGTGGAGCAAGTGGAAGAGCGGTTGAAGGAATC TTCCAGGTCTACGCGTCGGCTTCGGAAGTGCTTGTTGGCGAATGTCGAAG AGTTGCTCTGGGATAAAAATAAGGATGACGGTGAAGGGGTTGCCGCGGAT GAACCAGGGGCAGCTGAAGATGGAGAGGGTGCAAAGGTATCTCCTACGCA GAAGGCACGCCTGTACGCTCAGACCGTTGCGGTGTTGGATATAACGGAGG AGGAGATTCTGCGAGATCAGCTGATCCTTGAACATAACAAGGAGGCCTTG GAAGTGCTGGAAAAAGCACACAAGGCCGCCTCCTCGCCTGCGCAGATCAA GGCCGCAGACGAGTTGGCCGGCAAACTTTTGGAAACCGCGTCTCTCGTTC GATTCCAAAACTCTTTTCTGCTGATTGCGGAAAGAGCGTCAGAGAAGGCG GAGCGCAGGTTCTCCCCGGAAACCTTTCTCGCCTGGAGGCGCCAGTTTCG AAAGCTAGACGCCTTCCTACGTGATGGCAGAGGAGTGCGCGAAAGGGAGT GGATTCTGAACGAGGAAGATCTCTCCATGGAGCTGCTCAACTGGCTTAAG GCCCAGAAACGGGTCACGACGAAGAGCACCCACAAGTTCGTCAACGAGGT ACTCCTTGCGCGGGAAGGAGGGGTCCTCCGGCTTGCAAAGTATGGACTAA GTCTGCCTATTTCCACGACGACCATCAACGTCTGAATGCGCAAGCTGGGG TGCAAGCATGATCGGGTGAAACAGTCGTACTACAGCGAGGGTCACGAGCG GCCTGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig161:304535..305541+

>mRNA_P-littoralis_Contig161.72.1 ID=mRNA_P-littoralis_Contig161.72.1|Name=mRNA_P-littoralis_Contig161.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig161:304535..305541+ (Pylaiella littoralis U1_48)
ATGAGGTCTACGCTTCTGAAGGTGCGTCAGAAGCGGTGTCTTACCCGGGG
ATGGACCAGGAGACAGGCAAGGCTCGGCAAGAAAGCGGGCAACCGACTGG
CGTATCTCAGGTTTAGGGTGGAGCAAGTGGAAGAGCGGTTGAAGGAATCT
TCCAGGTCTACGCGTCGGCTTCGGAAGTGCTTGTTGGCGAATGTCGAAGA
GTTGCTCTGGGATAAAAATAAGGATGACGGTGAAGGGGTTGCCGCGGATG
AACCAGGGGCAGCTGAAGATGGAGAGGGTGCAAAGGTATCTCCTACGCAG
AAGGCACGCCTGTACGCTCAGACCGTTGCGGTGTTGGATATAACGGAGGA
GGAGATTCTGCGAGATCAGCTGATCCTTGAACATAACAAGGAGGCCTTGG
AAGTGCTGGAAAAAGCACACAAGGCCGCCTCCTCGCCTGCGCAGATCAAG
GCCGCAGACGAGTTGGCCGGCAAACTTTTGGAAACCGCGTCTCTCGTTCG
ATTCCAAAACTCTTTTCTGCTGATTGCGGAAAGAGCGTCAGAGAAGGCGG
AGCGCAGGTTCTCCCCGGAAACCTTTCTCGCCTGGAGGCGCCAGTTTCGA
AAGCTAGACGCCTTCCTACGTGATGGCAGAGGAGTGCGCGAAAGGGAGTG
GATTCTGAACGAGGAAGATCTCTCCATGGAGCTGCTCAACTGGCTTAAGG
CCCAGAAACGGGTCACGACGAAGAGCACCCACAAGTTCGTCAACGAGGTA
CTCCTTGCGCGGGAAGGAGGGGTCCTCCGGCTTGCAAAGTATGGACTAAG
TCTGCCTATTTCCACGACGACCATCAACGTCTGA
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