mRNA_P-littoralis_Contig161.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig161.65.1
Unique NamemRNA_P-littoralis_Contig161.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 9.880e-60
Identity = 99/141 (70.21%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    1 ELLKGSNNGILVHGDLKRLAEMYQQTPKTVSKYWRLYKKEKESGEEHSDLHSKRKGNCGRIGVDITALVEALQQVPLNNRTTIRSVAAALNITKSTLWDNLKKLGLRSCSRFLKPYLTDEGKAARLAWALRWVRSGPGGEH 423
            ELLKGSNNG L HGD+KR+  +Y+QTPKTVSKYW+LY ++KE+GEE  DLH+KRKGN G+ G+DI  L EALQ + L NRTTIRS+AAAL I KSTL+DNL  LGLRSCSRFLKP L+D+ KA RLAWALRWVRS  G  H
Sbjct:    4 ELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDAH 144          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.220e-49
Identity = 90/107 (84.11%), Postives = 94/107 (87.85%), Query Frame = 2
Query:  470 FFICKQGQRYYLYEGEDAPIRKVQHKSHVTKVMFLAAIARPRYDSSRNRQFDGKTGIYPFTVQRPAQRNSRNRAAGTMVTHCVDVNRATYKDKLINNVFPDIRAKFP 790
            F+ICKQGQRYY YEGE  PIRKVQHKSHV KVMFLAA+ARPRYDSSR+RQFDGK GIYPFTVQR AQRN RN AAGTMVTH V+VNR  YK KL NNVFPDIRAKFP
Sbjct:   65 FYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFP 170          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.930e-38
Identity = 76/129 (58.91%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  819 DNAPGHRVMADPDVMAAAGQGGGRIELINQPPNNPDTNILDLGFFNSIQSLQDRTTPTKIDERVAAVETAFWAQKTQTLDRGCTTLQSVLQEIMLARGDNTFKLPHLHKLTASRRNQAIPAELPCSQEA 1205
            DN P H + ADPDV+AA    G  I LINQP N P TNILDLGFFN+IQSLQDRTTP  +DE +  V+ AF  Q   TLD+   +LQ++LQEI+LA+GDNT KLPHL K  A+   ++IP ELP S EA
Sbjct:    4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKKDKAANSGRSIPKELPLSAEA 132          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.280e-36
Identity = 76/135 (56.30%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  801 TVLAQQDNAPGHRVMADPDVMAAAGQGGGRIELINQPPNNPDTNILDLGFFNSIQSLQDRTTPTKIDERVAAVETAFWAQKTQTLDRGCTTLQSVLQEIMLARGDNTFKLPHLHKLTASRRNQAIPAELPCSQEA 1205
            T+  Q DN P HR+ ADPDV+AA    G  I LINQP N+PDTNILDLGFFN++QSLQDR TP  +DE +  V+ AF  Q   T D+   +LQ++LQ I+LA+G+NTFKLPHL K  A+   ++IP ELP S EA
Sbjct:  150 TIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ-IILAKGNNTFKLPHLKKDNAANSGRSIPKELPLSAEA 283          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.270e-32
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 3
Query:  801 TVLAQQDNAPGHRVMADPDVMAAAGQGGGRIELINQPPNNPDTNILDLGFFNSIQSLQDRTTPTKIDERVAAVETAFWAQKTQTLDRGCTTLQSVLQ 1091
            TV AQQD+APGHRVM DP+++AAA QG  RIELINQP N+PD N+LDLGFFNSIQSLQDRTTPT ID+ VA VE AFWAQ    +DR  TTLQSV +
Sbjct:   83 TVFAQQDSAPGHRVM-DPEIVAAAAQGR-RIELINQPANSPDMNVLDLGFFNSIQSLQDRTTPTTIDQLVAEVERAFWAQSPGAVDRVWTTLQSVFR 177          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: UPI000E6FC8C0 (uncharacterized protein LOC113311561 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC8C0)

HSP 1 Score: 124 bits (310), Expect = 7.940e-29
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 2
Query:  470 FFICKQGQRYYLYEGEDAPIRKVQHKSHVTKVMFLAAIARPRYDSSRNRQFDGKTGIYPFTVQRPAQRNSRNRAAGTMVT-HCVDVNRATYKDKLINNVFPDIRAKFP 790
            F++ K+ Q+YYL   ED P+R  + K  +TKVMFLA +ARPRYDS+ N +F GK GI+PFT Q PAQRNS+NR AGTM T   + V +   +  LIN VFP +R+K+P
Sbjct:   12 FYMTKESQKYYLLPEEDEPLRSCKSKCFITKVMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKEILSVTKDVIRSCLINKVFPAMRSKWP 119          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: A0A6P6UZX5_COFAR (uncharacterized protein LOC113715904 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6UZX5_COFAR)

HSP 1 Score: 120 bits (300), Expect = 5.940e-28
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 2
Query:  407 APAANTSFTTSSTSFTWTRSVFFICKQGQRYYLYEGEDAPIRKVQHKSHVTKVMFLAAIARPRYDSSRNRQFDGKTGIYPFTVQRPAQRNSRNRAAGTMVTHCV-DVNRATYKDKLINNVFPDIRAKFP 790
            AP     F        W    F++ K+ ++YYL+  E+ P+R  + K  + KVMFLAA+ARPR+D SRN+ FDGK GI+PF  + PA+RNS+NR AGT+ T  +  V +  Y+  LI+NV P IRAK+P
Sbjct:   52 APVFENMFNMVHIDEKW----FYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWP 176          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: UPI000E6FC7BC (uncharacterized protein LOC113359119 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC7BC)

HSP 1 Score: 120 bits (300), Expect = 8.270e-28
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  482 KQGQRYYLYEGEDAPIRKVQHKSHVTKVMFLAAIARPRYDSSRNRQFDGKTGIYPFTVQRPAQRNSRNRAAGTMVTHCV-DVNRATYKDKLINNVFPDIRAKFP 790
            K+ Q+YYL   ED P+R  + K  +TKVMFLA +ARPRYDS+ N +F GK GI+PFT Q PAQRNS+NR AGTM T  +  V +   +  LIN V P IR+K+P
Sbjct:    3 KESQKYYLLPEEDEPLRSCKSKRFITKVMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKAILSVTKDVIRSCLINKVLPAIRSKWP 106          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: UPI000CD9D6ED (uncharacterized protein LOC111880928 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9D6ED)

HSP 1 Score: 118 bits (296), Expect = 9.010e-28
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  470 FFICKQGQRYYLYEGEDAPIRKVQHKSHVTKVMFLAAIARPRYDSSRNRQFDGKTGIYPFTVQRPAQRNSRNRAAGTMVTHCV-DVNRATYKDKLINNVFPDIRAKFP 790
            F++ K  +RYY   GED P+R  + K  +TK+MFLAA+ARPRYDSS N  F GK GIYPFT   PA+ +S+NR AGTM T  +  VN+   +  LI    PDIRAK+P
Sbjct:  102 FYMSKPSKRYYFVPGEDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKHSSKNRVAGTMETKPILSVNKEVTRSWLIEKFLPDIRAKWP 209          
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3)

HSP 1 Score: 122 bits (307), Expect = 2.060e-27
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  470 FFICKQGQRYYLYEGEDAPIRKVQHKSHVTKVMFLAAIARPRYDSSRNRQFDGKTGIYPFTVQRPAQRNSRNRAAGTMVTHCV-DVNRATYKDKLINNVFPDIRAKFP 790
            F++ K  +RYYL  G+D P+R  + K  +TK+MFLAA+ARPRYDSS N  F GK GIYPFT   PA+R+S+NR AGTM T  +  VN+   +  LI  V PDIRAK+P
Sbjct:  179 FYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWP 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig161.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD91_9PHAE9.880e-6070.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWV2_9PHAE2.220e-4984.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9R2_9PHAE1.930e-3858.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGY9_9PHAE2.280e-3656.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRZ6_9PHAE1.270e-3272.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000E6FC8C07.940e-2953.70uncharacterized protein LOC113311561 n=1 Tax=Papav... [more]
A0A6P6UZX5_COFAR5.940e-2845.74uncharacterized protein LOC113715904 n=1 Tax=Coffe... [more]
UPI000E6FC7BC8.270e-2854.81uncharacterized protein LOC113359119 n=1 Tax=Papav... [more]
UPI000CD9D6ED9.010e-2852.78uncharacterized protein LOC111880928 n=1 Tax=Lactu... [more]
UPI000CD9DCB32.060e-2754.63uncharacterized protein LOC111916103 n=1 Tax=Lactu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig161contigP-littoralis_Contig161:205135..206345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI53387
Model size1211
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.11e-16
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,3QGXT@4776|Peronosporales
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789778.3031585-UTR-P-littoralis_Contig161:205134..2056701680789778.3031585-UTR-P-littoralis_Contig161:205134..205670Pylaiella littoralis U1_48UTRP-littoralis_Contig161 205135..205670 -
1680789778.3250475-UTR-P-littoralis_Contig161:206282..2063451680789778.3250475-UTR-P-littoralis_Contig161:206282..206345Pylaiella littoralis U1_48UTRP-littoralis_Contig161 206283..206345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789778.3127892-CDS-P-littoralis_Contig161:205670..2062821680789778.3127892-CDS-P-littoralis_Contig161:205670..206282Pylaiella littoralis U1_48CDSP-littoralis_Contig161 205671..206282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig161.65.1prot_P-littoralis_Contig161.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig161 205671..206282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig161.65.1

>prot_P-littoralis_Contig161.65.1 ID=prot_P-littoralis_Contig161.65.1|Name=mRNA_P-littoralis_Contig161.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MYQQTPKTVSKYWRLYKKEKESGEEHSDLHSKRKGNCGRIGVDITALVEA
LQQVPLNNRTTIRSVAAALNITKSTLWDNLKKLGLRSCSRFLKPYLTDEG
KAARLAWALRWVRSGPGGEHKLHHFFDFVHLDEKCVLHLQAGSAVLPLRG
RGRSHSEGPAQEPRDQGHVPRSNSTAALRLQPQPPVRRQNRHLPLHGAAP
CSA*
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mRNA from alignment at P-littoralis_Contig161:205135..206345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig161.65.1 ID=mRNA_P-littoralis_Contig161.65.1|Name=mRNA_P-littoralis_Contig161.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1211bp|location=Sequence derived from alignment at P-littoralis_Contig161:205135..206345- (Pylaiella littoralis U1_48)
GAGCTGCTCAAGGGCAGCAACAACGGGATTCTGGTCCATGGTGACCTCAA GAGGTTGGCGGAGATGTACCAACAGACTCCAAAGACGGTGAGCAAGTATT GGAGGCTGTACAAGAAGGAGAAGGAAAGCGGAGAAGAACATTCCGACCTT CACAGCAAACGTAAGGGCAACTGCGGCAGGATAGGGGTAGACATCACCGC TCTGGTCGAAGCGCTCCAGCAGGTTCCCCTCAATAATCGCACCACGATTA GATCGGTTGCGGCCGCTTTGAACATTACCAAGTCAACTCTGTGGGACAAC CTCAAGAAGCTAGGCCTACGCTCGTGCTCGAGGTTCCTGAAGCCGTATCT TACTGACGAGGGTAAGGCTGCCAGACTGGCGTGGGCGTTGAGGTGGGTGA GGAGCGGCCCCGGCGGCGAACACAAGCTTCACCACTTCTTCGACTTCGTT CACTTGGACGAGAAGTGTGTTCTTCATCTGCAAGCAGGGTCAGCGGTACT ACCTCTACGAGGGCGAGGACGCTCCCATTCGGAAGGTCCAGCACAAGAGC CACGTGACCAAGGTCATGTTCCTCGCAGCAATAGCACGGCCGCGCTACGA CTCCAGCCGCAACCGCCAGTTCGACGGCAAAACCGGCATCTACCCCTTCA CGGTGCAGCGCCCTGCTCAGCGTAACAGCAGGAACAGGGCGGCGGGGACG ATGGTGACTCACTGCGTGGACGTCAACCGCGCAACGTACAAGGACAAGCT GATCAACAACGTCTTCCCAGACATCAGGGCGAAGTTCCCAGACCGCACAC ACCGTCTTGGCGCAGCAGGACAACGCTCCGGGGCACCGTGTGATGGCAGA CCCTGACGTTATGGCGGCGGCCGGGCAGGGGGGGGGGAGGATAGAGCTCA TCAACCAACCTCCCAACAACCCGGACACCAACATCCTCGACCTGGGGTTC TTCAACTCTATCCAGTCCCTACAAGACCGCACTACCCCCACCAAGATTGA CGAGCGTGTGGCCGCAGTGGAGACGGCCTTTTGGGCCCAGAAGACGCAGA CGCTCGACCGTGGCTGTACAACACTACAGAGTGTCCTCCAGGAGATCATG CTGGCGCGTGGAGACAACACCTTCAAGCTGCCGCACCTGCATAAGTTAAC GGCATCACGCCGCAACCAGGCCATCCCGGCAGAGCTACCGTGCAGCCAGG AAGCATGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig161:205135..206345-

>mRNA_P-littoralis_Contig161.65.1 ID=mRNA_P-littoralis_Contig161.65.1|Name=mRNA_P-littoralis_Contig161.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig161:205135..206345- (Pylaiella littoralis U1_48)
ATGTACCAACAGACTCCAAAGACGGTGAGCAAGTATTGGAGGCTGTACAA
GAAGGAGAAGGAAAGCGGAGAAGAACATTCCGACCTTCACAGCAAACGTA
AGGGCAACTGCGGCAGGATAGGGGTAGACATCACCGCTCTGGTCGAAGCG
CTCCAGCAGGTTCCCCTCAATAATCGCACCACGATTAGATCGGTTGCGGC
CGCTTTGAACATTACCAAGTCAACTCTGTGGGACAACCTCAAGAAGCTAG
GCCTACGCTCGTGCTCGAGGTTCCTGAAGCCGTATCTTACTGACGAGGGT
AAGGCTGCCAGACTGGCGTGGGCGTTGAGGTGGGTGAGGAGCGGCCCCGG
CGGCGAACACAAGCTTCACCACTTCTTCGACTTCGTTCACTTGGACGAGA
AGTGTGTTCTTCATCTGCAAGCAGGGTCAGCGGTACTACCTCTACGAGGG
CGAGGACGCTCCCATTCGGAAGGTCCAGCACAAGAGCCACGTGACCAAGG
TCATGTTCCTCGCAGCAATAGCACGGCCGCGCTACGACTCCAGCCGCAAC
CGCCAGTTCGACGGCAAAACCGGCATCTACCCCTTCACGGTGCAGCGCCC
TGCTCAGCGTAA
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