mRNA_P-littoralis_Contig16.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.3.1
Unique NamemRNA_P-littoralis_Contig16.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.870e-40
Identity = 85/132 (64.39%), Postives = 95/132 (71.97%), Query Frame = 1
Query:   22 MPSTLSKLYHAAARGSVERTVAVLSRGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASVIGSSRVVRDLLRQGASVS 417
            MPSTLSKLY AAA GSVERTVAVLS+GSV+IDGGYGD G+TPLM ASTMGYLRVVRVLLRLG RVSVADNDGATALHLSIVN  H +V +              + TPL VA+  G  + +  L+  G   S
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNK-HLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGGCSS 131          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 4.570e-40
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 1
Query:  256 SIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            S ++   GS++   ATT IDRGCG+TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHHSVYH HLAVSKDLIEAGADLEAR
Sbjct:    3 STLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEAR 91          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 9.570e-39
Identity = 82/116 (70.69%), Postives = 87/116 (75.00%), Query Frame = 1
Query:   22 MPSTLSKLYHAAARGSVERTVAVLSRGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASVIG 369
            MPSTLSKLY AAA GSVERTVAVLS+GSVDIDGGYGD G+TPLM ASTMGYLRVVRVLLR G RVSVADNDGATALHLSIV   H +V R              + TPL VA+  G
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIV-IKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKG 115          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.240e-38
Identity = 92/160 (57.50%), Postives = 105/160 (65.62%), Query Frame = 1
Query:   22 MPSTLSKLYHAAARGSVERTVAVLSRGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEA 501
            MPSTLSKLYHA A GSVERTVAVLS+GSVDIDGGYGD G+TPLM A TMGYLRVVRVLLRLG RVSVADNDGATALHLSIVN  H +V +              + TPL VA+  G  + +  L+  GA+V        T L+ S     L   + L+ A
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNK-HLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGA 159          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.390e-37
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 1
Query:  256 SIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            S ++   GSVER  ATTDIDR CG+TN TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHHSVYH+HLAVS  LIEAGADLEAR
Sbjct:    3 STLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEAR 91          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.690e-37
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 1
Query:  277 GSVERVTATTDIDRGCGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            GSVER  ATTDIDR CG+TNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHH+VYHKHLAVSKDLIEAGADL+AR
Sbjct:  400 GSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDAR 481          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.470e-29
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 1
Query:  256 SIVNTWHGSVERVTATTDIDRGCGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSK 486
            S ++   GS +   ATTDIDR CG+TNQTPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHH+VYHKHLAVSK
Sbjct:    9 STLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.460e-12
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  352 VASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            VAS +G  RVVR LLR GA VS AD+DG TALH S+ +KHLAVSK L++AGADLEAR
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEAR 93          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.310e-12
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  277 GSVERVT-----ATTDIDRGCGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKHLAVSKDLIEAGADLEAR 522
            GSVER         T+IDR C E   T LM A+  G  R+VR LLR GA VSV+  DG+TALH ++  ++LAV+K LI+AGA++EA+
Sbjct:   28 GSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAK 114          
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Match: UPI001EE58C4A (ankyrin repeat and KH domain-containing protein mask-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE58C4A)

HSP 1 Score: 72.0 bits (175), Expect = 1.330e-11
Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = 1
Query:    4 LVSVPNMPSTLSKLYHAAARGSVERTVAVLSRGSVDIDGGYGDGGQTPLMVASTMGYLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDID----RGCGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALH 450
            L  +P        L+ A   G++     +L +  VDI+      G TP+M A+ MG+L V+++L+  G  VS+A+  G   LHL+ V+   G VE V     +D       G   +TPLM+A + G+ ++V  L+ +G  VS+ D D    LH
Sbjct:  162 LTPLPRDAQAEDDLHQACETGNLSAVRLILCQRRVDIN--CRQSGSTPVMRAARMGHLEVMKLLVNKGANVSLANTPGNNMLHLACVD---GPVEVVQYVLPLDVVDINSRGWNERTPLMIAGITGTLKIVDVLVSKGGDVSLVDKDSNNILH 309          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G449_ECTSI2.870e-4064.39EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LH66_ECTSI4.570e-4083.15EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI9.570e-3970.69EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE1.240e-3857.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE1.390e-3783.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE2.690e-3790.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.470e-2980.52Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.460e-1270.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE5.310e-1250.57Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI001EE58C4A1.330e-1132.03ankyrin repeat and KH domain-containing protein ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:4350..5593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LH66
Model size522
Max annot lvl2880.D8LH66|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.83e-41
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size501
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.8649178-UTR-P-littoralis_Contig16:4349..43701680789763.8649178-UTR-P-littoralis_Contig16:4349..4370Pylaiella littoralis U1_48UTRP-littoralis_Contig16 4350..4370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.8751376-CDS-P-littoralis_Contig16:4370..46241680789763.8751376-CDS-P-littoralis_Contig16:4370..4624Pylaiella littoralis U1_48CDSP-littoralis_Contig16 4371..4624 +
1680789763.8869576-CDS-P-littoralis_Contig16:5346..55931680789763.8869576-CDS-P-littoralis_Contig16:5346..5593Pylaiella littoralis U1_48CDSP-littoralis_Contig16 5347..5593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.3.1prot_P-littoralis_Contig16.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 4371..5593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.3.1

>prot_P-littoralis_Contig16.3.1 ID=prot_P-littoralis_Contig16.3.1|Name=mRNA_P-littoralis_Contig16.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
MPSTLSKLYHAAARGSVERTVAVLSRGSVDIDGGYGDGGQTPLMVASTMG
YLRVVRVLLRLGPRVSVADNDGATALHLSIVNTWHGSVERVTATTDIDRG
CGETNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHKH
LAVSKDLIEAGADLEAR
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mRNA from alignment at P-littoralis_Contig16:4350..5593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.3.1 ID=mRNA_P-littoralis_Contig16.3.1|Name=mRNA_P-littoralis_Contig16.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1244bp|location=Sequence derived from alignment at P-littoralis_Contig16:4350..5593+ (Pylaiella littoralis U1_48)
GTACTTGTTTCAGTTCCCAACATGCCGTCAACTCTGAGCAAACTGTATCA TGCCGCAGCCCGTGGTTCCGTCGAGCGTACGGTTGCTGTGCTTTCTCGAG GGTCGGTCGACATCGACGGAGGCTACGGTGATGGGGGCCAGACCCCTCTT ATGGTGGCCTCCACCATGGGATACTTGCGGGTCGTAAGGGTCCTCTTGAG ACTGGGACCCCGGGTGTCGGTGGCGGACAATGACGGTGCGACTGCTCTAC ACCTGTCGATTGTCAACACCTGGCAGTCAGCAAGGCTCTGGTCAAGGCTG GTGCGGATGTAGGAGCGAGAGCTTGCTTTCTATCGGGGTCAGAGACCATT CGAGGATCCACGCCTCTCCATCTGGCCGCCATTGTTGGCTTCCACGAAGG GATGGTCATGCTGATTAATGCAGGCGCAAACGTGGACAGCCGCTTGCACA CCAACGAGACACTCTAGTACATTTCGGCAAGATACATTACATAAGAAAGT GTTATCCTGGACCGTCAACCCAACATCACAAATTCAGGCTGGGCCCGATT TCTGGTTTCTTATGAGCGGGCCGGTACTGTACACGGGCAAGAAGGCTGAA CAAGGAAGCTGATGCGGCCAAAGCCAAGGCGACGAAAGCCAAGGCCGCCC CGGGCCCAAAGCGCAAGGTATCGTCGTCTTCGAGCGTGGTCACCAAAAAA GCAAAAACAGCTCATTCAGTGGCAGCAAAAAAGTCAACGGCCGCGGTGTC CGCCAAACGCAAGGCGGACGCCCTGAAAACGCAAGAGATAACAGAACAGG CCGTTGTCTCGACCATAAAAACAAAGGCTAAGGTGGCCAAGAAGAAGCTG CCTCGGCCTCTGGCCGGGCTCACCTCCAACCTCAACTGGTAGCGTTGATT TGATTTTCCCATTGTGAGGAGAAAAGTTTAGACGTAGAAACATGTTGACA GCAGATGCAACTGAGCACGACATGCCATCCACTCTGAGCAAAGCCAGCGG TTCCGTCGAGCGTGTGACTGCTACGACCGACATCGACCGAGGCTGTGGTG AAACGAACCAGACACCGCTGATGGTAGCCTCCGTGATCGGTTCTTCGCGC GTTGTCAGAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAG CGACGGTTATACTGCTCTGCACCACTCGGTTTATCACAAGCATCTGGCTG TCAGCAAAGACCTGATCGAGGCGGGAGCGGATCTTGAAGCGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:4350..5593+

>mRNA_P-littoralis_Contig16.3.1 ID=mRNA_P-littoralis_Contig16.3.1|Name=mRNA_P-littoralis_Contig16.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig16:4350..5593+ (Pylaiella littoralis U1_48)
ATGCCGTCAACTCTGAGCAAACTGTATCATGCCGCAGCCCGTGGTTCCGT
CGAGCGTACGGTTGCTGTGCTTTCTCGAGGGTCGGTCGACATCGACGGAG
GCTACGGTGATGGGGGCCAGACCCCTCTTATGGTGGCCTCCACCATGGGA
TACTTGCGGGTCGTAAGGGTCCTCTTGAGACTGGGACCCCGGGTGTCGGT
GGCGGACAATGACGGTGCGACTGCTCTACACCTGTCGATTGTCAACACCT
GGCACGGTTCCGTCGAGCGTGTGACTGCTACGACCGACATCGACCGAGGC
TGTGGTGAAACGAACCAGACACCGCTGATGGTAGCCTCCGTGATCGGTTC
TTCGCGCGTTGTCAGAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAG
CGGACAGCGACGGTTATACTGCTCTGCACCACTCGGTTTATCACAAGCAT
CTGGCTGTCAGCAAAGACCTGATCGAGGCGGGAGCGGATCTTGAAGCGAG
G
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