mRNA_P-littoralis_Contig1583.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A6G6D7F3_ECTSI (DNA-directed RNA polymerase subunit beta n=9 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7F3_ECTSI) HSP 1 Score: 470 bits (1209), Expect = 1.890e-155 Identity = 231/247 (93.52%), Postives = 242/247 (97.98%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
PT DMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMYKPNASRILINK+LK+AAK+ +K WLFNKFSPGK+LLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKG NIPEPGIPESFNVLLRELNALGLDMTTHEIGKL+NGE+TSYKVNLLTL++PK+V
Sbjct: 893 PTDDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETDKGWLFNKFSPGKVLLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLNNGEITSYKVNLLTLMKPKVV 1139
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A140G1K0_UNDPI (DNA-directed RNA polymerase subunit beta n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A140G1K0_UNDPI) HSP 1 Score: 455 bits (1171), Expect = 2.830e-152 Identity = 222/247 (89.88%), Postives = 236/247 (95.55%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
P HDMPFLPDGT+VDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMY+PNASRILINK+LK+AAKK NK WLFNK SPGK+LLTDGRTG++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AIIKG IPEPG+PESF VLLRELNALGLD+TTH+IGKLDNGEM SYKVNLLTL++ KL+
Sbjct: 656 PIHDMPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 902
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A0R6M4L3_UNDPI (DNA-directed RNA polymerase subunit beta n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6M4L3_UNDPI) HSP 1 Score: 455 bits (1171), Expect = 6.250e-150 Identity = 222/247 (89.88%), Postives = 236/247 (95.55%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
P HDMPFLPDGT+VDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMY+PNASRILINK+LK+AAKK NK WLFNK SPGK+LLTDGRTG++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AIIKG IPEPG+PESF VLLRELNALGLD+TTH+IGKLDNGEM SYKVNLLTL++ KL+
Sbjct: 881 PIHDMPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 1127
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A1I9LV95_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LV95_9PHAE) HSP 1 Score: 451 bits (1161), Expect = 2.300e-148 Identity = 220/247 (89.07%), Postives = 236/247 (95.55%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
PT+DMPFLPDGTI+DVILNPLGVPSRMNVGQIFECLL FAGDYLNRRF+V+PFDEMY PNASRILINK+LK+AA++ NKSWLFNKFSPGKILLTDGR G++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGRHEVFTAIIKGQNIPEP +PESFNVLLRELNALGLDMTTHEI LDN E+TSYKVNL L++P +V
Sbjct: 890 PTYDMPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFRVLPFDEMYTPNASRILINKALKKAAQQTNKSWLFNKFSPGKILLTDGRNGNIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTLKSDDINGRHEVFTAIIKGQNIPEPCVPESFNVLLRELNALGLDMTTHEISNLDNLEITSYKVNLFNLIKPNVV 1136
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0FB00_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB00_9PHAE) HSP 1 Score: 432 bits (1112), Expect = 4.110e-141 Identity = 206/247 (83.40%), Postives = 233/247 (94.33%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
PT DMPFLPDGTIVDVILNPLGVPSRMNVGQ+FECLL FAGDYLNRRFKV+PFDEMY+P ASRILINK L++A+KK NKSWLFN SPGK++LTDGRTG++FDNSV+VGKPYILKLIHLVDKKMHARSTG YSLVTQQPLGGKS+HGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDI+GRHEVF AII+G+ IP+PG+PESF VLLRELN+LGLD+TT++IGKLDNGE+ YKVNL+TL++ KL+
Sbjct: 891 PTEDMPFLPDGTIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVLPFDEMYRPEASRILINKKLREASKKTNKSWLFNSSSPGKVMLTDGRTGELFDNSVMVGKPYILKLIHLVDKKMHARSTGPYSLVTQQPLGGKSRHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDISGRHEVFNAIIRGRPIPKPGVPESFKVLLRELNSLGLDITTYQIGKLDNGEIAPYKVNLMTLIKSKLL 1137
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0F9J7_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J7_9PHAE) HSP 1 Score: 430 bits (1105), Expect = 3.760e-140 Identity = 212/245 (86.53%), Postives = 229/245 (93.47%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPK 735
PT DMP+LPDG IVDVILNPLGVPSRMNVGQ+FECLL FAGDYLNRRFKV+PFDEMY+P+ASRILINK+LK+AAKK KSWLFNK SPGKILLTDGRTG VFDNS+LVGK YILKLIHLVDKKMHARSTG+YSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVF+AII+G IPEPGIPESF VLLRELNALGLD+TTH +GKLDNGEM S KVNLL L++ K
Sbjct: 884 PTQDMPYLPDGRIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVIPFDEMYRPDASRILINKALKKAAKKTKKSWLFNKSSPGKILLTDGRTGQVFDNSILVGKSYILKLIHLVDKKMHARSTGTYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFSAIIQGFPIPEPGIPESFKVLLRELNALGLDITTHHLGKLDNGEMVSSKVNLLALVKSK 1128
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A141BSD1_9PHAE (DNA-directed RNA polymerase subunit beta n=16 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD1_9PHAE) HSP 1 Score: 420 bits (1080), Expect = 1.620e-136 Identity = 203/247 (82.19%), Postives = 226/247 (91.50%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
PT+DMPFLPDGT +DVILNPLGVPSRMNVGQIFECLL FAGDYLN RFKV+PFDEMY+ NASRI INK+LK AA K NKSW+FNK PGK++L DGRTG++F+N +LVGKPYILKLIHLVDKKMHARSTGSYSL+TQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AII G+ IPEPGIPESF VLLRELNALGLD+TTH++ K ++GE+ S+ VNLLTLL+ KL+
Sbjct: 877 PTYDMPFLPDGTTIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVLPFDEMYRKNASRIFINKALKSAAYKTNKSWIFNKSFPGKVILKDGRTGEIFNNPILVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGIPESFKVLLRELNALGLDITTHQLRKSESGEIKSFNVNLLTLLKSKLL 1123
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A2R4QPV0_9PHAE (DNA-directed RNA polymerase subunit beta n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPV0_9PHAE) HSP 1 Score: 417 bits (1073), Expect = 1.740e-135 Identity = 205/247 (83.00%), Postives = 228/247 (92.31%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
PT DMPFLPDGTI+DVILNPLGVPSRMNVGQIFECLL FAGDYLN+RFKV+PFDEMY+ NASRIL+NK+LK+AA K NK+WLFNK SPGKI L DGRTG++F+N VLVGKPYILKLIHLVDKKMHARSTGSYSL+TQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AII G+ IPEPG+PESF VLLRELNALGLD+TTH++ K ++ E+ S KVNLLTL++ KL+
Sbjct: 877 PTCDMPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKVLPFDEMYRSNASRILVNKTLKKAAYKTNKTWLFNKSSPGKIPLIDGRTGELFNNPVLVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGVPESFKVLLRELNALGLDITTHQLRKSNSEEIKSSKVNLLTLIKSKLL 1123
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0F779_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F779_9PHAE) HSP 1 Score: 399 bits (1024), Expect = 1.710e-128 Identity = 190/247 (76.92%), Postives = 223/247 (90.28%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
P DMPFLPDGT++DVILNPLGVPSRMNVGQIFECLL FAGDYLN RFKV+PFDEMY+P+ASR+LIN++L++A+ + NK+WL+ SPGKILLTDGRTGD+FDN + VGKPY+LKLIHLVDKK+HARSTG YSLVTQQPL GK+++GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGRHEVF AIIKG IP+PGIPESF VLL ELNALGLD+TT+++GKL+NGE+ SY VNL+ + +L+
Sbjct: 851 PREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVIPFDEMYEPDASRMLINQTLEKASLQTNKTWLYTSSSPGKILLTDGRTGDIFDNPITVGKPYLLKLIHLVDKKIHARSTGPYSLVTQQPLKGKARNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRHEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDSYHVNLMAYVRSRLL 1097
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8E5XRD8_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD8_9PHAE) HSP 1 Score: 390 bits (1001), Expect = 1.140e-124 Identity = 187/239 (78.24%), Postives = 213/239 (89.12%), Query Frame = 1
Query: 1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLL 717
P DMPFLPDGT VD++LNPLGVPSRMNVGQIFECLL AGDYLNRRFK++PFDEMYKP ASR L+NK L+QAA + N WLFN SPGK+LLTDGRTG+VF+N +LVGKPYI+KLIHLVDKK+HARSTG YSLVTQQPLGG+SKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDD++GR+ VF AIIKG IP+PGIPESF VL+REL+ALGLD+TTH + KL+ GE+ + KV+LL
Sbjct: 906 PIQDMPFLPDGTSVDILLNPLGVPSRMNVGQIFECLLGLAGDYLNRRFKMLPFDEMYKPEASRTLVNKKLRQAAIQTNNPWLFNNHSPGKVLLTDGRTGEVFENPILVGKPYIIKLIHLVDKKIHARSTGPYSLVTQQPLGGRSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDMDGRNAVFNAIIKGHAIPKPGIPESFKVLIRELHALGLDITTHAVEKLETGEIVAQKVDLL 1144 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1583.5.1 >prot_P-littoralis_Contig1583.5.1 ID=prot_P-littoralis_Contig1583.5.1|Name=mRNA_P-littoralis_Contig1583.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=244bp MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDback to top mRNA from alignment at P-littoralis_Contig1583:9507..10250+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1583.5.1 ID=mRNA_P-littoralis_Contig1583.5.1|Name=mRNA_P-littoralis_Contig1583.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig1583:9507..10250+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1583:9507..10250+ >mRNA_P-littoralis_Contig1583.5.1 ID=mRNA_P-littoralis_Contig1583.5.1|Name=mRNA_P-littoralis_Contig1583.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=732bp|location=Sequence derived from alignment at P-littoralis_Contig1583:9507..10250+ (Pylaiella littoralis U1_48)back to top |