prot_P-littoralis_Contig1583.5.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1583.5.1
Unique Nameprot_P-littoralis_Contig1583.5.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length244
Homology
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A6G6D7F3_ECTSI (DNA-directed RNA polymerase subunit beta n=9 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7F3_ECTSI)

HSP 1 Score: 463 bits (1192), Expect = 5.340e-153
Identity = 228/243 (93.83%), Postives = 239/243 (98.35%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMYKPNASRILINK+LK+AAK+ +K WLFNKFSPGK+LLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKG NIPEPGIPESFNVLLRELNALGLDMTTHEIGKL+NGE+TSYKVNLLTL++PK+V
Sbjct:  897 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETDKGWLFNKFSPGKVLLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLNNGEITSYKVNLLTLMKPKVV 1139          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A140G1K0_UNDPI (DNA-directed RNA polymerase subunit beta n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A140G1K0_UNDPI)

HSP 1 Score: 447 bits (1151), Expect = 2.380e-149
Identity = 219/243 (90.12%), Postives = 233/243 (95.88%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGT+VDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMY+PNASRILINK+LK+AAKK NK WLFNK SPGK+LLTDGRTG++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AIIKG  IPEPG+PESF VLLRELNALGLD+TTH+IGKLDNGEM SYKVNLLTL++ KL+
Sbjct:  660 MPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 902          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A0R6M4L3_UNDPI (DNA-directed RNA polymerase subunit beta n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6M4L3_UNDPI)

HSP 1 Score: 447 bits (1151), Expect = 4.870e-147
Identity = 219/243 (90.12%), Postives = 233/243 (95.88%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGT+VDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMY+PNASRILINK+LK+AAKK NK WLFNK SPGK+LLTDGRTG++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AIIKG  IPEPG+PESF VLLRELNALGLD+TTH+IGKLDNGEM SYKVNLLTL++ KL+
Sbjct:  885 MPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 1127          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A1I9LV95_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LV95_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 1.780e-145
Identity = 217/243 (89.30%), Postives = 232/243 (95.47%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGTI+DVILNPLGVPSRMNVGQIFECLL FAGDYLNRRF+V+PFDEMY PNASRILINK+LK+AA++ NKSWLFNKFSPGKILLTDGR G++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGRHEVFTAIIKGQNIPEP +PESFNVLLRELNALGLDMTTHEI  LDN E+TSYKVNL  L++P +V
Sbjct:  894 MPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFRVLPFDEMYTPNASRILINKALKKAAQQTNKSWLFNKFSPGKILLTDGRNGNIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTLKSDDINGRHEVFTAIIKGQNIPEPCVPESFNVLLRELNALGLDMTTHEISNLDNLEITSYKVNLFNLIKPNVV 1136          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0FB00_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB00_9PHAE)

HSP 1 Score: 426 bits (1094), Expect = 1.580e-138
Identity = 203/243 (83.54%), Postives = 230/243 (94.65%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGTIVDVILNPLGVPSRMNVGQ+FECLL FAGDYLNRRFKV+PFDEMY+P ASRILINK L++A+KK NKSWLFN  SPGK++LTDGRTG++FDNSV+VGKPYILKLIHLVDKKMHARSTG YSLVTQQPLGGKS+HGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDI+GRHEVF AII+G+ IP+PG+PESF VLLRELN+LGLD+TT++IGKLDNGE+  YKVNL+TL++ KL+
Sbjct:  895 MPFLPDGTIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVLPFDEMYRPEASRILINKKLREASKKTNKSWLFNSSSPGKVMLTDGRTGELFDNSVMVGKPYILKLIHLVDKKMHARSTGPYSLVTQQPLGGKSRHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDISGRHEVFNAIIRGRPIPKPGVPESFKVLLRELNSLGLDITTYQIGKLDNGEIAPYKVNLMTLIKSKLL 1137          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0F9J7_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J7_9PHAE)

HSP 1 Score: 423 bits (1087), Expect = 1.450e-137
Identity = 209/241 (86.72%), Postives = 226/241 (93.78%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPK 241
            MP+LPDG IVDVILNPLGVPSRMNVGQ+FECLL FAGDYLNRRFKV+PFDEMY+P+ASRILINK+LK+AAKK  KSWLFNK SPGKILLTDGRTG VFDNS+LVGK YILKLIHLVDKKMHARSTG+YSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVF+AII+G  IPEPGIPESF VLLRELNALGLD+TTH +GKLDNGEM S KVNLL L++ K
Sbjct:  888 MPYLPDGRIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVIPFDEMYRPDASRILINKALKKAAKKTKKSWLFNKSSPGKILLTDGRTGQVFDNSILVGKSYILKLIHLVDKKMHARSTGTYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFSAIIQGFPIPEPGIPESFKVLLRELNALGLDITTHHLGKLDNGEMVSSKVNLLALVKSK 1128          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A141BSD1_9PHAE (DNA-directed RNA polymerase subunit beta n=16 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD1_9PHAE)

HSP 1 Score: 412 bits (1060), Expect = 1.220e-133
Identity = 200/243 (82.30%), Postives = 222/243 (91.36%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGT +DVILNPLGVPSRMNVGQIFECLL FAGDYLN RFKV+PFDEMY+ NASRI INK+LK AA K NKSW+FNK  PGK++L DGRTG++F+N +LVGKPYILKLIHLVDKKMHARSTGSYSL+TQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AII G+ IPEPGIPESF VLLRELNALGLD+TTH++ K ++GE+ S+ VNLLTLL+ KL+
Sbjct:  881 MPFLPDGTTIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVLPFDEMYRKNASRIFINKALKSAAYKTNKSWIFNKSFPGKVILKDGRTGEIFNNPILVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGIPESFKVLLRELNALGLDITTHQLRKSESGEIKSFNVNLLTLLKSKLL 1123          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A2R4QPV0_9PHAE (DNA-directed RNA polymerase subunit beta n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPV0_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 2.410e-133
Identity = 202/243 (83.13%), Postives = 225/243 (92.59%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGTI+DVILNPLGVPSRMNVGQIFECLL FAGDYLN+RFKV+PFDEMY+ NASRIL+NK+LK+AA K NK+WLFNK SPGKI L DGRTG++F+N VLVGKPYILKLIHLVDKKMHARSTGSYSL+TQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AII G+ IPEPG+PESF VLLRELNALGLD+TTH++ K ++ E+ S KVNLLTL++ KL+
Sbjct:  881 MPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKVLPFDEMYRSNASRILVNKTLKKAAYKTNKTWLFNKSSPGKIPLIDGRTGELFNNPVLVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGVPESFKVLLRELNALGLDITTHQLRKSNSEEIKSSKVNLLTLIKSKLL 1123          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0F779_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F779_9PHAE)

HSP 1 Score: 394 bits (1012), Expect = 8.480e-127
Identity = 188/243 (77.37%), Postives = 221/243 (90.95%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 243
            MPFLPDGT++DVILNPLGVPSRMNVGQIFECLL FAGDYLN RFKV+PFDEMY+P+ASR+LIN++L++A+ + NK+WL+   SPGKILLTDGRTGD+FDN + VGKPY+LKLIHLVDKK+HARSTG YSLVTQQPL GK+++GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGRHEVF AIIKG  IP+PGIPESF VLL ELNALGLD+TT+++GKL+NGE+ SY VNL+  +  +L+
Sbjct:  855 MPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVIPFDEMYEPDASRMLINQTLEKASLQTNKTWLYTSSSPGKILLTDGRTGDIFDNPITVGKPYLLKLIHLVDKKIHARSTGPYSLVTQQPLKGKARNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRHEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDSYHVNLMAYVRSRLL 1097          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8E5XRD8_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD8_9PHAE)

HSP 1 Score: 385 bits (989), Expect = 5.540e-123
Identity = 185/235 (78.72%), Postives = 211/235 (89.79%), Query Frame = 0
Query:    1 MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLL 235
            MPFLPDGT VD++LNPLGVPSRMNVGQIFECLL  AGDYLNRRFK++PFDEMYKP ASR L+NK L+QAA + N  WLFN  SPGK+LLTDGRTG+VF+N +LVGKPYI+KLIHLVDKK+HARSTG YSLVTQQPLGG+SKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDD++GR+ VF AIIKG  IP+PGIPESF VL+REL+ALGLD+TTH + KL+ GE+ + KV+LL
Sbjct:  910 MPFLPDGTSVDILLNPLGVPSRMNVGQIFECLLGLAGDYLNRRFKMLPFDEMYKPEASRTLVNKKLRQAAIQTNNPWLFNNHSPGKVLLTDGRTGEVFENPILVGKPYIIKLIHLVDKKIHARSTGPYSLVTQQPLGGRSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDMDGRNAVFNAIIKGHAIPKPGIPESFKVLIRELHALGLDITTHAVEKLETGEIVAQKVDLL 1144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7F3_ECTSI5.340e-15393.83DNA-directed RNA polymerase subunit beta n=9 Tax=E... [more]
A0A140G1K0_UNDPI2.380e-14990.12DNA-directed RNA polymerase subunit beta n=1 Tax=U... [more]
A0A0R6M4L3_UNDPI4.870e-14790.12DNA-directed RNA polymerase subunit beta n=27 Tax=... [more]
A0A1I9LV95_9PHAE1.780e-14589.30DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A8F0FB00_9PHAE1.580e-13883.54DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A8F0F9J7_9PHAE1.450e-13786.72DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A141BSD1_9PHAE1.220e-13382.30DNA-directed RNA polymerase subunit beta n=16 Tax=... [more]
A0A2R4QPV0_9PHAE2.410e-13383.13DNA-directed RNA polymerase subunit beta n=3 Tax=F... [more]
A0A8F0F779_9PHAE8.480e-12777.37DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A8E5XRD8_9PHAE5.540e-12378.72DNA-directed RNA polymerase subunit beta n=1 Tax=I... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 1..141
e-value: 2.0E-46
score: 158.8
NoneNo IPR availableGENE3D3.90.1800.10RNA polymerase alpha subunit dimerisation domaincoord: 129..180
e-value: 1.2E-15
score: 59.8
NoneNo IPR availablePANTHERPTHR20856:SF20DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 1..214
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..217
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 143..216
e-value: 3.5E-24
score: 85.0
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 1..127
e-value: 3.0E-41
score: 143.3
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1583contigP-littoralis_Contig1583:9519..10250 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1583.5.1mRNA_P-littoralis_Contig1583.5.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1583 9507..10250 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1583.5.1 ID=prot_P-littoralis_Contig1583.5.1|Name=mRNA_P-littoralis_Contig1583.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=244bp
MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFD
EMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDN
SVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEM
EVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESF
NVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNAP_su2_dom
IPR007641RNA_pol_Rpb2_7
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR015712DNA-dir_RNA_pol_su2