mRNA_P-littoralis_Contig1583.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1583.5.1
Unique NamemRNA_P-littoralis_Contig1583.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A6G6D7F3_ECTSI (DNA-directed RNA polymerase subunit beta n=9 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7F3_ECTSI)

HSP 1 Score: 470 bits (1209), Expect = 1.890e-155
Identity = 231/247 (93.52%), Postives = 242/247 (97.98%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            PT DMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMYKPNASRILINK+LK+AAK+ +K WLFNKFSPGK+LLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKG NIPEPGIPESFNVLLRELNALGLDMTTHEIGKL+NGE+TSYKVNLLTL++PK+V
Sbjct:  893 PTDDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETDKGWLFNKFSPGKVLLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLNNGEITSYKVNLLTLMKPKVV 1139          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A140G1K0_UNDPI (DNA-directed RNA polymerase subunit beta n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A140G1K0_UNDPI)

HSP 1 Score: 455 bits (1171), Expect = 2.830e-152
Identity = 222/247 (89.88%), Postives = 236/247 (95.55%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            P HDMPFLPDGT+VDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMY+PNASRILINK+LK+AAKK NK WLFNK SPGK+LLTDGRTG++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AIIKG  IPEPG+PESF VLLRELNALGLD+TTH+IGKLDNGEM SYKVNLLTL++ KL+
Sbjct:  656 PIHDMPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 902          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A0R6M4L3_UNDPI (DNA-directed RNA polymerase subunit beta n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6M4L3_UNDPI)

HSP 1 Score: 455 bits (1171), Expect = 6.250e-150
Identity = 222/247 (89.88%), Postives = 236/247 (95.55%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            P HDMPFLPDGT+VDVILNPLGVPSRMNVGQIFECLL FAGDYLNRRFKV+PFDEMY+PNASRILINK+LK+AAKK NK WLFNK SPGK+LLTDGRTG++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AIIKG  IPEPG+PESF VLLRELNALGLD+TTH+IGKLDNGEM SYKVNLLTL++ KL+
Sbjct:  881 PIHDMPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 1127          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A1I9LV95_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LV95_9PHAE)

HSP 1 Score: 451 bits (1161), Expect = 2.300e-148
Identity = 220/247 (89.07%), Postives = 236/247 (95.55%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            PT+DMPFLPDGTI+DVILNPLGVPSRMNVGQIFECLL FAGDYLNRRF+V+PFDEMY PNASRILINK+LK+AA++ NKSWLFNKFSPGKILLTDGR G++FDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGRHEVFTAIIKGQNIPEP +PESFNVLLRELNALGLDMTTHEI  LDN E+TSYKVNL  L++P +V
Sbjct:  890 PTYDMPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFRVLPFDEMYTPNASRILINKALKKAAQQTNKSWLFNKFSPGKILLTDGRNGNIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTLKSDDINGRHEVFTAIIKGQNIPEPCVPESFNVLLRELNALGLDMTTHEISNLDNLEITSYKVNLFNLIKPNVV 1136          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0FB00_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB00_9PHAE)

HSP 1 Score: 432 bits (1112), Expect = 4.110e-141
Identity = 206/247 (83.40%), Postives = 233/247 (94.33%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            PT DMPFLPDGTIVDVILNPLGVPSRMNVGQ+FECLL FAGDYLNRRFKV+PFDEMY+P ASRILINK L++A+KK NKSWLFN  SPGK++LTDGRTG++FDNSV+VGKPYILKLIHLVDKKMHARSTG YSLVTQQPLGGKS+HGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDI+GRHEVF AII+G+ IP+PG+PESF VLLRELN+LGLD+TT++IGKLDNGE+  YKVNL+TL++ KL+
Sbjct:  891 PTEDMPFLPDGTIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVLPFDEMYRPEASRILINKKLREASKKTNKSWLFNSSSPGKVMLTDGRTGELFDNSVMVGKPYILKLIHLVDKKMHARSTGPYSLVTQQPLGGKSRHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDISGRHEVFNAIIRGRPIPKPGVPESFKVLLRELNSLGLDITTYQIGKLDNGEIAPYKVNLMTLIKSKLL 1137          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0F9J7_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J7_9PHAE)

HSP 1 Score: 430 bits (1105), Expect = 3.760e-140
Identity = 212/245 (86.53%), Postives = 229/245 (93.47%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPK 735
            PT DMP+LPDG IVDVILNPLGVPSRMNVGQ+FECLL FAGDYLNRRFKV+PFDEMY+P+ASRILINK+LK+AAKK  KSWLFNK SPGKILLTDGRTG VFDNS+LVGK YILKLIHLVDKKMHARSTG+YSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVF+AII+G  IPEPGIPESF VLLRELNALGLD+TTH +GKLDNGEM S KVNLL L++ K
Sbjct:  884 PTQDMPYLPDGRIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVIPFDEMYRPDASRILINKALKKAAKKTKKSWLFNKSSPGKILLTDGRTGQVFDNSILVGKSYILKLIHLVDKKMHARSTGTYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFSAIIQGFPIPEPGIPESFKVLLRELNALGLDITTHHLGKLDNGEMVSSKVNLLALVKSK 1128          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A141BSD1_9PHAE (DNA-directed RNA polymerase subunit beta n=16 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD1_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 1.620e-136
Identity = 203/247 (82.19%), Postives = 226/247 (91.50%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            PT+DMPFLPDGT +DVILNPLGVPSRMNVGQIFECLL FAGDYLN RFKV+PFDEMY+ NASRI INK+LK AA K NKSW+FNK  PGK++L DGRTG++F+N +LVGKPYILKLIHLVDKKMHARSTGSYSL+TQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AII G+ IPEPGIPESF VLLRELNALGLD+TTH++ K ++GE+ S+ VNLLTLL+ KL+
Sbjct:  877 PTYDMPFLPDGTTIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVLPFDEMYRKNASRIFINKALKSAAYKTNKSWIFNKSFPGKVILKDGRTGEIFNNPILVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGIPESFKVLLRELNALGLDITTHQLRKSESGEIKSFNVNLLTLLKSKLL 1123          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A2R4QPV0_9PHAE (DNA-directed RNA polymerase subunit beta n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPV0_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 1.740e-135
Identity = 205/247 (83.00%), Postives = 228/247 (92.31%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            PT DMPFLPDGTI+DVILNPLGVPSRMNVGQIFECLL FAGDYLN+RFKV+PFDEMY+ NASRIL+NK+LK+AA K NK+WLFNK SPGKI L DGRTG++F+N VLVGKPYILKLIHLVDKKMHARSTGSYSL+TQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVF AII G+ IPEPG+PESF VLLRELNALGLD+TTH++ K ++ E+ S KVNLLTL++ KL+
Sbjct:  877 PTCDMPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKVLPFDEMYRSNASRILVNKTLKKAAYKTNKTWLFNKSSPGKIPLIDGRTGELFNNPVLVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGVPESFKVLLRELNALGLDITTHQLRKSNSEEIKSSKVNLLTLIKSKLL 1123          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8F0F779_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F779_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 1.710e-128
Identity = 190/247 (76.92%), Postives = 223/247 (90.28%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV 741
            P  DMPFLPDGT++DVILNPLGVPSRMNVGQIFECLL FAGDYLN RFKV+PFDEMY+P+ASR+LIN++L++A+ + NK+WL+   SPGKILLTDGRTGD+FDN + VGKPY+LKLIHLVDKK+HARSTG YSLVTQQPL GK+++GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGRHEVF AIIKG  IP+PGIPESF VLL ELNALGLD+TT+++GKL+NGE+ SY VNL+  +  +L+
Sbjct:  851 PREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVIPFDEMYEPDASRMLINQTLEKASLQTNKTWLYTSSSPGKILLTDGRTGDIFDNPITVGKPYLLKLIHLVDKKIHARSTGPYSLVTQQPLKGKARNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRHEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDSYHVNLMAYVRSRLL 1097          
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Match: A0A8E5XRD8_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD8_9PHAE)

HSP 1 Score: 390 bits (1001), Expect = 1.140e-124
Identity = 187/239 (78.24%), Postives = 213/239 (89.12%), Query Frame = 1
Query:    1 PTHDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFDEMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLL 717
            P  DMPFLPDGT VD++LNPLGVPSRMNVGQIFECLL  AGDYLNRRFK++PFDEMYKP ASR L+NK L+QAA + N  WLFN  SPGK+LLTDGRTG+VF+N +LVGKPYI+KLIHLVDKK+HARSTG YSLVTQQPLGG+SKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDD++GR+ VF AIIKG  IP+PGIPESF VL+REL+ALGLD+TTH + KL+ GE+ + KV+LL
Sbjct:  906 PIQDMPFLPDGTSVDILLNPLGVPSRMNVGQIFECLLGLAGDYLNRRFKMLPFDEMYKPEASRTLVNKKLRQAAIQTNNPWLFNNHSPGKVLLTDGRTGEVFENPILVGKPYIIKLIHLVDKKIHARSTGPYSLVTQQPLGGRSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDMDGRNAVFNAIIKGHAIPKPGIPESFKVLIRELHALGLDITTHAVEKLETGEIVAQKVDLL 1144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1583.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7F3_ECTSI1.890e-15593.52DNA-directed RNA polymerase subunit beta n=9 Tax=E... [more]
A0A140G1K0_UNDPI2.830e-15289.88DNA-directed RNA polymerase subunit beta n=1 Tax=U... [more]
A0A0R6M4L3_UNDPI6.250e-15089.88DNA-directed RNA polymerase subunit beta n=27 Tax=... [more]
A0A1I9LV95_9PHAE2.300e-14889.07DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A8F0FB00_9PHAE4.110e-14183.40DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A8F0F9J7_9PHAE3.760e-14086.53DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A141BSD1_9PHAE1.620e-13682.19DNA-directed RNA polymerase subunit beta n=16 Tax=... [more]
A0A2R4QPV0_9PHAE1.740e-13583.00DNA-directed RNA polymerase subunit beta n=3 Tax=F... [more]
A0A8F0F779_9PHAE1.710e-12876.92DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A8E5XRD8_9PHAE1.140e-12478.24DNA-directed RNA polymerase subunit beta n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1583contigP-littoralis_Contig1583:9507..10250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D1J787
Preferred namerpoB
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5,RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size744
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03043,ko:K03046
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0030880,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0061695,GO:1902494,GO:1990234
Exons1
Evalue9.54e-153
EggNOG OGsCOG0085@1|root,KOG0214@2759|Eukaryota
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size732
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.7107728-UTR-P-littoralis_Contig1583:9506..95181680789757.7107728-UTR-P-littoralis_Contig1583:9506..9518Pylaiella littoralis U1_48UTRP-littoralis_Contig1583 9507..9518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789757.7275462-CDS-P-littoralis_Contig1583:9518..102501680789757.7275462-CDS-P-littoralis_Contig1583:9518..10250Pylaiella littoralis U1_48CDSP-littoralis_Contig1583 9519..10250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1583.5.1prot_P-littoralis_Contig1583.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1583 9519..10250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1583.5.1

>prot_P-littoralis_Contig1583.5.1 ID=prot_P-littoralis_Contig1583.5.1|Name=mRNA_P-littoralis_Contig1583.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=244bp
MPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLAFAGDYLNRRFKVMPFD
EMYKPNASRILINKSLKQAAKKANKSWLFNKFSPGKILLTDGRTGDVFDN
SVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEM
EVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGQNIPEPGIPESF
NVLLRELNALGLDMTTHEIGKLDNGEMTSYKVNLLTLLEPKLV*
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mRNA from alignment at P-littoralis_Contig1583:9507..10250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1583.5.1 ID=mRNA_P-littoralis_Contig1583.5.1|Name=mRNA_P-littoralis_Contig1583.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig1583:9507..10250+ (Pylaiella littoralis U1_48)
CCAACCCATGATATGCCATTTTTACCTGACGGTACAATAGTAGATGTTAT CTTAAATCCTTTAGGCGTTCCTTCAAGGATGAATGTAGGTCAAATTTTTG AATGTTTATTAGCTTTTGCAGGTGATTACTTAAACCGTAGATTTAAAGTA ATGCCGTTTGATGAAATGTATAAACCAAATGCTTCACGGATACTTATTAA TAAATCCTTAAAACAAGCAGCCAAAAAAGCTAATAAATCTTGGCTATTTA ATAAATTCTCTCCTGGAAAAATTTTATTAACTGATGGAAGAACTGGTGAC GTCTTCGATAATTCAGTTTTAGTTGGGAAACCGTATATTTTAAAACTTAT TCATTTGGTTGATAAAAAAATGCACGCACGTTCAACAGGTTCTTATTCTC TAGTTACTCAACAACCCTTAGGAGGGAAATCAAAACATGGAGGACAAAGG TTTGGAGAAATGGAAGTCTGGGCCTTAGAAGCTTTTGGTGTAGCTTATAC TTTGCAAGAATTGTTAACTATAAAATCAGATGATATCAATGGACGACATG AAGTCTTTACTGCTATTATTAAAGGTCAAAATATACCAGAACCAGGTATT CCAGAATCTTTTAACGTTCTGCTTCGTGAATTAAATGCCTTAGGATTAGA TATGACAACTCACGAAATTGGTAAATTAGATAATGGTGAAATGACGTCTT ATAAAGTTAATTTATTAACTCTTCTTGAGCCAAAATTAGTTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1583:9507..10250+

>mRNA_P-littoralis_Contig1583.5.1 ID=mRNA_P-littoralis_Contig1583.5.1|Name=mRNA_P-littoralis_Contig1583.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=732bp|location=Sequence derived from alignment at P-littoralis_Contig1583:9507..10250+ (Pylaiella littoralis U1_48)
ATGCCATTTTTACCTGACGGTACAATAGTAGATGTTATCTTAAATCCTTT
AGGCGTTCCTTCAAGGATGAATGTAGGTCAAATTTTTGAATGTTTATTAG
CTTTTGCAGGTGATTACTTAAACCGTAGATTTAAAGTAATGCCGTTTGAT
GAAATGTATAAACCAAATGCTTCACGGATACTTATTAATAAATCCTTAAA
ACAAGCAGCCAAAAAAGCTAATAAATCTTGGCTATTTAATAAATTCTCTC
CTGGAAAAATTTTATTAACTGATGGAAGAACTGGTGACGTCTTCGATAAT
TCAGTTTTAGTTGGGAAACCGTATATTTTAAAACTTATTCATTTGGTTGA
TAAAAAAATGCACGCACGTTCAACAGGTTCTTATTCTCTAGTTACTCAAC
AACCCTTAGGAGGGAAATCAAAACATGGAGGACAAAGGTTTGGAGAAATG
GAAGTCTGGGCCTTAGAAGCTTTTGGTGTAGCTTATACTTTGCAAGAATT
GTTAACTATAAAATCAGATGATATCAATGGACGACATGAAGTCTTTACTG
CTATTATTAAAGGTCAAAATATACCAGAACCAGGTATTCCAGAATCTTTT
AACGTTCTGCTTCGTGAATTAAATGCCTTAGGATTAGATATGACAACTCA
CGAAATTGGTAAATTAGATAATGGTGAAATGACGTCTTATAAAGTTAATT
TATTAACTCTTCTTGAGCCAAAATTAGTTTAA
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