mRNA_P-littoralis_Contig158.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.127.1
Unique NamemRNA_P-littoralis_Contig158.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.600e-35
Identity = 64/114 (56.14%), Postives = 78/114 (68.42%), Query Frame = 3
Query:  234 LGIIFQCLDDIDNMFFTCCTLHNMLHAYDGLDELEPAVEWGGKEGL--HNGWDRSPLLDESITGSTG-SPIGDGNSTPRQKELHFALKNALVAHFEVQRQKNSIRWLKHKAPGR 566
            LGI+FQ  + IDN+FFTCCTLH+MLHA+DGLDELE   EWGG+ GL  H  WD  PLLD+S  GST  +P  D  +T   +  H  LKNAL+ HFE +R KN IRWL +   G+
Sbjct:   37 LGILFQHENVIDNLFFTCCTLHSMLHAFDGLDELETVKEWGGRAGLGLHGTWDNDPLLDDSTVGSTSPTPADDDGTTTTPQAAHEELKNALMTHFEFRRSKNDIRWLSYATTGK 150          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.060e-31
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  234 LGIIFQCLDDIDNMFFTCCTLHNMLHAYDGLDELEPAVEWGGKEGLHNGWDRSPLLDESITGSTG-SPIGDGNSTPRQKELHFALKNALVAHFEVQR 521
            LGI+FQ  + IDN+FFTCCT HN+LHA+DGLDELE   +WGG+ GLH+ WD  PLLDES  GST  +P  D  +T   +  H  LKNAL+AH E +R
Sbjct:   32 LGILFQDKNVIDNLFFTCCTSHNVLHAFDGLDELETVEDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTIPEAAHEELKNALIAHVEFRR 128          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.850e-24
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 YAQKEYTLYDEDGEPFQRKGNYSIVDNGYNQWEILIPPSKFADGDIEIRWSKALESVRKDVECFFGILKGRFRILKL 231
            Y++KE+T+Y+ DG P+Q KG Y +VDNGY++W  LIPPSK+     ++ +SK LESVRKDVECFFGI+KG FRILKL
Sbjct:   63 YSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKL 139          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.750e-24
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 YAQKEYTLYDEDGEPFQRKGNYSIVDNGYNQWEILIPPSKFADGDIEIRWSKALESVRKDVECFFGILKGRFRILKL 231
            Y++KE+T+Y+ DG P+Q KG Y +VDNGY++W  LIPPSK+     ++ +SK LESVRKDVECFFGI+KGRFRILKL
Sbjct:  304 YSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKL 380          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.130e-21
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 YAQKEYTLYDEDGEPFQRKGNYSIVDNGYNQWEILIPPSKFADGDIEIRWSKALESVRKDVECFFGILKGRFRILKL 231
            Y +K + LY+EDG     KG Y + DNGY++W+ILI PSK+   + ++ +SK LESVRKDVECFFGILKGRFRILKL
Sbjct:  151 YTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKL 227          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.570e-20
Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  192 FRYLEGPV*NFETNLGIIFQCLDDIDNMFFTCCTLHNMLHAYDGLDELEPAVEWGGKEGLHNGWDRSPLLDESITGSTGS--------PIGDGNSTPRQKELHFALKNALVAHFEVQRQKNSIRWL 545
            F  L+G     +  LG  ++  +DIDN+F TCC LHNMLH +DG+D  E  V+W G  GLH+ WD  PL D +  GSTG            + + T  Q   H  LK  L+  F  +++ N I WL
Sbjct:   45 FDILKGRFRILKLRLG--YRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWL 168          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.090e-20
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    7 QKEYTLYDEDGEPFQRKGNYSIVDNGYNQWEILIPPSKFADGDIEIRWSKALESVRKDVECFFGILKGRFRILKLI*ELFSN 252
            +K + +Y+EDG     KG Y +VDNGY++W+ILI PSK+   + ++ +SK LESVRKDVECFFGILKGRFRILKL  E  S 
Sbjct:  263 EKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQ 344          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.280e-20
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 YAQKEYTLYDEDGEPFQRKGNYSIVDNGYNQWEILIPPSKFADGDIEIRWSKALESVRKDVECFFGILKGRFRILKL 231
            Y +++Y LY +DG+ F+ KG Y +VDNGY++W  LIPPSK      ++ +SK LES RKDVEC+FGILKGRFRI KL
Sbjct:  229 YTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKL 305          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.080e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 YAQKEYTLYDEDGEPFQRKGNYSIVDNGYNQWEILIPPSKFADGDIEIRWSKALESVRKDVECFFGILKGRFRILKL 231
            Y +++Y LY +DG+ F+ KG Y +VDNGY++W  LIPPSK      ++ +SK LES RKDVEC+FGILKGRFRI KL
Sbjct:  320 YTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKL 396          
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.090e-19
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 YAQKEYTLYDEDGEPFQRKGNYSIVDNGYNQWEILIPPSKFADGDIEIRWSKALESVRKDVECFFGILKGRFRILKL 231
            Y +K + +Y++DG     KG Y +VDNGY++W+ILI PSK+   + ++ +SK LESVRKDVECFFGILKGR RIL L
Sbjct:  106 YTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILML 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KML5_9PHAE2.600e-3556.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2M7_9PHAE1.060e-3157.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.850e-2462.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE5.750e-2463.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE5.130e-2161.04DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L135_9PHAE2.570e-2038.89Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE3.090e-2058.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE6.280e-2058.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.080e-1958.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI1.090e-1957.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:474658..476197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size713
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.69e-07
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size342
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789756.9759653-UTR-P-littoralis_Contig158:474657..4747561680789756.9759653-UTR-P-littoralis_Contig158:474657..474756Pylaiella littoralis U1_48UTRP-littoralis_Contig158 474658..474756 -
1680789756.9965322-UTR-P-littoralis_Contig158:475098..4752771680789756.9965322-UTR-P-littoralis_Contig158:475098..475277Pylaiella littoralis U1_48UTRP-littoralis_Contig158 475099..475277 -
1680789757.0045161-UTR-P-littoralis_Contig158:476104..4761971680789757.0045161-UTR-P-littoralis_Contig158:476104..476197Pylaiella littoralis U1_48UTRP-littoralis_Contig158 476105..476197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789756.9869883-CDS-P-littoralis_Contig158:474756..4750981680789756.9869883-CDS-P-littoralis_Contig158:474756..475098Pylaiella littoralis U1_48CDSP-littoralis_Contig158 474757..475098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.127.1prot_P-littoralis_Contig158.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 474757..475098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.127.1

>prot_P-littoralis_Contig158.127.1 ID=prot_P-littoralis_Contig158.127.1|Name=mRNA_P-littoralis_Contig158.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MFFTCCTLHNMLHAYDGLDELEPAVEWGGKEGLHNGWDRSPLLDESITGS
TGSPIGDGNSTPRQKELHFALKNALVAHFEVQRQKNSIRWLKHKAPGRRF
ASSNVEITNVETA*
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mRNA from alignment at P-littoralis_Contig158:474658..476197-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.127.1 ID=mRNA_P-littoralis_Contig158.127.1|Name=mRNA_P-littoralis_Contig158.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1540bp|location=Sequence derived from alignment at P-littoralis_Contig158:474658..476197- (Pylaiella littoralis U1_48)
TATGCGCAGAAGGAGTACACTCTTTACGACGAGGACGGTGAGCCGTTCCA GCGAAAGGGCAACTACAGCATCGTCGACAATGGGTACAACCAGGTGATTG CTGTCGCTACGGCTTGTTTTCTCGTTGTGTAGCCCGTGTGTTGGTGCCTC GCATCTCCCTTACCCCAGAGGCTGGAACGCTGTGCTCGTACTTGTATATG ATTTAGTAGATGAGTGAAACGTAACTGGCGTTGTGTCCTGCGCGTGAACG GGGAGTCTAAAATGCTGTTAGATATACTGTTGACCTCCAATCTAGTATTC CTCTATGTTGGCTTGGTCGATATGTGTGTGTTGGCCTTTTCATCCACCGA GGTTTCGCAAATGGCTGAAATGAAGAGGCGTTCGCGCTCCCTTCCCCCCC CCCCTCCGCAATTTGGATAAATTCGAAGTATACCCCGAATGTGTATCGGG CGACCCTACCGTTTTAAACAACCCGCAGATTCGAAGTAGTTACGTACCAT GTTACCGCTGTTTACATCGGGTACTGCATAGCTGCGAGTCGCGCTGTGTC TAGGGCTACAGTGAAGATATGGCGCGATCGGCACGAATGTATTTTAGGGA TTTCTGTTCGTCCGCTACACACCTATCGCACAGGCTGTCGCGGGGGATTG CGTGCAATTGCTTCACTGAACTCACTGCTGTGTACCTTTTTTGTTTCGTT GCTAGTTTCCGAAGGACTGGTGCCCGCTGTTGGGTGCGCACAGTGACGCG GAGTAGGACGTACAACATCGGAGCGTTGTTAGTGCTCAGCGTTCAGCGCC CCACATGATTGGAACACATGGTGCTCACCGAAGCAACCCCCCCCCCCCCC CCCATTCCTAATCCCAGCCGCTGTTCCCCTTCGTTCGCCACCATTCGCCG CACCTCCCTTCCCTTTTAAGTGGGAGATCCTCATCCCCCCTAGCAAGTTC GCAGACGGCGATATCGAGATCAGGTGGAGCAAAGCGCTGGAAAGCGTTCG CAAGGATGTCGAGTGCTTTTTCGGTATCTTGAAGGGCCGGTTTAGAATTT TGAAACTAATTTAGGAATTATTTTCCAATGCTTGGACGACATCGACAACA TGTTCTTCACGTGCTGTACGTTGCACAACATGTTGCATGCATACGATGGG CTTGATGAACTCGAGCCTGCGGTGGAGTGGGGGGGGAAGGAGGGTCTCCA CAACGGCTGGGATCGCTCGCCCCTATTGGACGAGAGTATCACAGGAAGCA CTGGTAGCCCGATCGGCGACGGCAACAGCACCCCGAGGCAAAAAGAATTG CATTTTGCCCTGAAAAATGCACTGGTTGCACACTTTGAAGTCCAAAGACA GAAGAACAGCATTCGGTGGCTTAAACACAAAGCGCCTGGTCGCCGGTTCG CGTCTTCGAACGTTGAGATTACCAACGTCGAGACAGCCTGATTTTGGACT CTACGGTGGTTGCCGTGTTAATTTTGTATCGCCCTTGTGGATGTTTTTCA GTAGCCTTGCGCGTGTTGTGTTGATTTGTGTGCCGCCCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:474658..476197-

>mRNA_P-littoralis_Contig158.127.1 ID=mRNA_P-littoralis_Contig158.127.1|Name=mRNA_P-littoralis_Contig158.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig158:474658..476197- (Pylaiella littoralis U1_48)
ATGTTCTTCACGTGCTGTACGTTGCACAACATGTTGCATGCATACGATGG
GCTTGATGAACTCGAGCCTGCGGTGGAGTGGGGGGGGAAGGAGGGTCTCC
ACAACGGCTGGGATCGCTCGCCCCTATTGGACGAGAGTATCACAGGAAGC
ACTGGTAGCCCGATCGGCGACGGCAACAGCACCCCGAGGCAAAAAGAATT
GCATTTTGCCCTGAAAAATGCACTGGTTGCACACTTTGAAGTCCAAAGAC
AGAAGAACAGCATTCGGTGGCTTAAACACAAAGCGCCTGGTCGCCGGTTC
GCGTCTTCGAACGTTGAGATTACCAACGTCGAGACAGCCTGA
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