mRNA_P-littoralis_Contig1577.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9I1D1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I1D1_FAGSY) HSP 1 Score: 263 bits (673), Expect = 4.820e-78 Identity = 166/348 (47.70%), Postives = 194/348 (55.75%), Query Frame = 2
Query: 446 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSS--SADFSTSVSTQADVKSRPSAACK----------LTVSCSFHSPPGVLFTFPSRYYYTIGHSVVFSFTRWSSQIHTGFHVPHATRDG 1357
PLLPKL+GYFAEFLRES LAP GILY PTCVG YRY + +F +G ++ TL A+ IFST + LT+PP T+L EE LGF+GIGFSPM PL+ L K ERSPTD + SA+ L PFIFGA LDH +LGALAGD GCFPLD+ AYPP S+W L ++VFRVC+DLVP +PAPKQCFTP P + HF N + S+ S +T + SA + L FHSP GVLFT PSRYY+TIGH VFS TRWS IHTGFHVPHATR G
Sbjct: 262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTPRC-------------PVNCCASTHFGENQLALGSSGISPLTTTHPLILQHQSARGQSPGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLTRWSLLIHTGFHVPHATRVG 590
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9FRF2_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FRF2_FAGSY) HSP 1 Score: 229 bits (585), Expect = 9.830e-63 Identity = 150/329 (45.59%), Postives = 178/329 (54.10%), Query Frame = 2
Query: 446 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSS--SADFSTSVSTQADVKSRPSAACK----------LTVSCSFHSPPGVLFTFPSRYYYTIGHSVVFSFT 1300
PLLPKL+GYFAEFLRES LAP GILY PTCVG YRY + +F +G ++ TL A+ IFST + LT+PP T+L EE LGF+GIGFSPM PL+ L K ERSPTD + SA+ L PFIFGA LDH +LGALAGD GCFPLD+ AYPP S+W L ++VFRVC+DLVP +PAPKQCFTP P + HF N + S+ S +T + SA + L FHSP GVLFT PSRYY+TIGH VFS T
Sbjct: 262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTPRC-------------PVNCCASTHFGENQLALGSSGISPLTTTHPLILQHQSARGQSPGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLT 571
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9H1D9_FAGSY (Uncharacterized protein n=10 Tax=Magnoliopsida TaxID=3398 RepID=A0A2N9H1D9_FAGSY) HSP 1 Score: 229 bits (585), Expect = 1.240e-62 Identity = 150/329 (45.59%), Postives = 178/329 (54.10%), Query Frame = 2
Query: 446 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSS--SADFSTSVSTQADVKSRPSAACK----------LTVSCSFHSPPGVLFTFPSRYYYTIGHSVVFSFT 1300
PLLPKL+GYFAEFLRES LAP GILY PTCVG YRY + +F +G ++ TL A+ IFST + LT+PP T+L EE LGF+GIGFSPM PL+ L K ERSPTD + SA+ L PFIFGA LDH +LGALAGD GCFPLD+ AYPP S+W L ++VFRVC+DLVP +PAPKQCFTP P + HF N + S+ S +T + SA + L FHSP GVLFT PSRYY+TIGH VFS T
Sbjct: 262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTPRC-------------PVNCCASTHFGENQLALGSSGISPLTTTHPLILQHQSARGQSPGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLT 571
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9G3L9_FAGSY (Uncharacterized protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A2N9G3L9_FAGSY) HSP 1 Score: 223 bits (568), Expect = 9.750e-61 Identity = 143/301 (47.51%), Postives = 168/301 (55.81%), Query Frame = 2
Query: 242 SLFHRVSL*DSVQIVTPFVRVGTYPTRNFATLGPL*LRPPFTGASV---ISRR-PVFLVNSRLDLVIAT**VPLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTP 1036
S+ +SL DS QIVTPFVRVGT P + F L R A+V RR P PLLPKL+GYFAEFLRES LAP GILY PTCVG YRY + +F +G ++ TL A+ IFST + LT+PP T+L EE LGF+GIGFSPM PL+ L K ERSPTD + SA+ L PFIFGA LDH +LGALAGD GCFPLD+ AYPP S+W L ++VFRVC+DLVP +PAPKQCFTP
Sbjct: 196 SISPSLSLRDSAQIVTPFVRVGTLPDKEFRYL-----RTVIVTAAVHRGFGRRLPCHQSPGPGHCDPLCEEAPLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTP 485
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9HVI7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVI7_FAGSY) HSP 1 Score: 202 bits (514), Expect = 2.900e-57 Identity = 131/258 (50.78%), Postives = 148/258 (57.36%), Query Frame = 1
Query: 1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQPETCVFGKQSLGPCYCNLIGTPSP---EVTGLFCRVP*RELSRALWYTLPTHLC-RFRVQVFFTYDSASFSWKHNINYFNNAHIIPYS*LSSKYFLYFSTPRPDLPPADEPSGGNLRFSGHRILTHV 753
N PTLGTYY PR R ADIEVPNLPVD +S P+ R NLCTPPLPF R P NC PET V VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF + QS GP +C+ + +P ++ G F RE A L C F + F +SFSW++ + YF+ P PD P DEP GG LRFSGH ILT+V
Sbjct: 118 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPC----HQSPGPGHCDPLCEEAPLLPKLRGYFAEFL-RESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAV-----------------APGPDSPSVDEPCGGTLRFSGHWILTNV 347
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9IAE2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IAE2_FAGSY) HSP 1 Score: 177 bits (449), Expect = 1.480e-47 Identity = 118/239 (49.37%), Postives = 134/239 (56.07%), Query Frame = 1
Query: 1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSH-------------------QP---------ETCVFGKQSLGPCYCNLIGTPSP---EVTGLFCRVP*RELSRALWYTLPTHLC-RFRVQVFFTYDSASFSWKHNINYFN 612
N PTLGTYY PR R ADIEVPNLPVD +S P+ R NLCTPPLPF R P NC PET V VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF QP + C FGKQS GP +C+ + +P ++ G F RE A L C F + F +SFSW++ + YF+
Sbjct: 118 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDLPALGRRQPPYMVLRLCGDLCWFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEFL-RESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFS 349
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9EWN1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EWN1_FAGSY) HSP 1 Score: 164 bits (414), Expect = 1.070e-43 Identity = 91/131 (69.47%), Postives = 95/131 (72.52%), Query Frame = 1
Query: 1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQ 384
N PTLGTYY PR R ADIEVPNLPVD +S P+ R NLCTPPLPF R P NC PET V VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF +
Sbjct: 118 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRR 242
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9HQM6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HQM6_FAGSY) HSP 1 Score: 164 bits (416), Expect = 2.060e-42 Identity = 115/258 (44.57%), Postives = 132/258 (51.16%), Query Frame = 1
Query: 1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQPETCVFGKQSLGPCYCNLIGTPSP---EVTGLFCRVP*RELSRALWYTLPTHLC-RFRVQVFFTYDSASFSWKHNINYFNNAHIIPYS*LSSKYFLYFSTPRPDLPPADEPSGGNLRFSGHRILTHV 753
N PTLGTYY PR R ADIEVPNLPVD +S P+ R NLCTPPLPF R P NC PET V VVRIFTD SISPSLS RQCP+RYAFRAG + H ETCVFGKQS GP +C+ + +P ++ G F RE A L C F + F +SFSW++ + YF+ P PD P DEP GG LRFSGH ILT+V
Sbjct: 92 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAG-----------------VSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEFL-RESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAV-----------------APGPDSPSVDEPCGGTLRFSGHWILTNV 308
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A5N5KVY8_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KVY8_9ROSI) HSP 1 Score: 157 bits (397), Expect = 2.130e-40 Identity = 115/279 (41.22%), Postives = 127/279 (45.52%), Query Frame = 1
Query: 1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIRNLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQPETCVFGKQSLGPCY--CNLIGTPSPEVTGLFCRVP*RELSR-----ALWYTLPTHLCRFRVQVFFTYDSASFSWKHNINYFNNAHIIPYS*LSSKYFLYFSTPRPDLPPADEPSGGNLRFSGHRILTHV-------------TPAYANAS 777
N PTLGTYY PR R ADIEVPNLPVDV QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF + PC+ N + P+ L R P + R WY F +SFSW++ + YF+ P PD P DEP GG LRFSGH ILT+V TPA A AS
Sbjct: 163 NCPTLGTYYSPRWRRADIEVPNLPVDV---------------------------------------------QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL-----------PCHQVTNFLDLPA-----LGRRQPPYMVLRLCGDLCFWYP-------------FVEGRSSFSWEYGMGYFSVV-----------------APGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSTPARAGAS 350
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A8J5FAK3_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FAK3_ZINOF) HSP 1 Score: 158 bits (400), Expect = 1.080e-39 Identity = 113/276 (40.94%), Postives = 137/276 (49.64%), Query Frame = 2
Query: 350 LRPPFTGASV----ISRRPVFLV----------------------------NSRLDLVIAT**VPLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-LVLTYPPRTSLPEETLGFQGIGFSPMLHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYWLAV---------HVVFRVCIDLVPNYQPAPKQCFTP 1036
LRPPFTGASV + R P L D + PLLPKL+GYFAEFLRES LAP GILY PT VG YRY + +F +G + TL R +S S ++ LT+PP T+L EE LGF+GIGFSPM L+P +L+ AN L L +LGALAGD GCFPLD+ AYPP S+W + ++VFRVC+DLVP +PAPKQCFTP
Sbjct: 40 LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEE--APLLPKLRGYFAEFLRESCLAPLGILYLPTSVGFGYRYPFVEGRSSFSWEYGMGYFRAVAPRTRTLARGISSTPSYPEKARSPCALTHPPWTNLAEEPLGFRGIGFSPMF----ALLKPTFSLPLRPHLL---ARANLLAVSAPLPPLSLSGHLGALAGDPGCFPLDDEAYPPSSHWPTLIPLIFFGGSYLVFRVCLDLVPLSRPAPKQCFTP 306 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1577.3.1 >prot_P-littoralis_Contig1577.3.1 ID=prot_P-littoralis_Contig1577.3.1|Name=mRNA_P-littoralis_Contig1577.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp MTVQAFLGSITSTTSIMHTLFRIHNSAQSIFSTSQHLVLTYPPRTSLPEEback to top mRNA from alignment at P-littoralis_Contig1577:3140..5277- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1577.3.1 ID=mRNA_P-littoralis_Contig1577.3.1|Name=mRNA_P-littoralis_Contig1577.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2138bp|location=Sequence derived from alignment at P-littoralis_Contig1577:3140..5277- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1577:3140..5277- >mRNA_P-littoralis_Contig1577.3.1 ID=mRNA_P-littoralis_Contig1577.3.1|Name=mRNA_P-littoralis_Contig1577.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig1577:3140..5277- (Pylaiella littoralis U1_48)back to top |