mRNA_P-littoralis_Contig1577.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1577.3.1
Unique NamemRNA_P-littoralis_Contig1577.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9I1D1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I1D1_FAGSY)

HSP 1 Score: 263 bits (673), Expect = 4.820e-78
Identity = 166/348 (47.70%), Postives = 194/348 (55.75%), Query Frame = 2
Query:  446 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSS--SADFSTSVSTQADVKSRPSAACK----------LTVSCSFHSPPGVLFTFPSRYYYTIGHSVVFSFTRWSSQIHTGFHVPHATRDG 1357
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPM               PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP               P +     HF  N  +  S+  S   +T   +    SA  +          L     FHSP GVLFT PSRYY+TIGH  VFS TRWS  IHTGFHVPHATR G
Sbjct:  262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTPRC-------------PVNCCASTHFGENQLALGSSGISPLTTTHPLILQHQSARGQSPGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLTRWSLLIHTGFHVPHATRVG 590          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9FRF2_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FRF2_FAGSY)

HSP 1 Score: 229 bits (585), Expect = 9.830e-63
Identity = 150/329 (45.59%), Postives = 178/329 (54.10%), Query Frame = 2
Query:  446 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSS--SADFSTSVSTQADVKSRPSAACK----------LTVSCSFHSPPGVLFTFPSRYYYTIGHSVVFSFT 1300
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPM               PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP               P +     HF  N  +  S+  S   +T   +    SA  +          L     FHSP GVLFT PSRYY+TIGH  VFS T
Sbjct:  262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTPRC-------------PVNCCASTHFGENQLALGSSGISPLTTTHPLILQHQSARGQSPGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLT 571          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9H1D9_FAGSY (Uncharacterized protein n=10 Tax=Magnoliopsida TaxID=3398 RepID=A0A2N9H1D9_FAGSY)

HSP 1 Score: 229 bits (585), Expect = 1.240e-62
Identity = 150/329 (45.59%), Postives = 178/329 (54.10%), Query Frame = 2
Query:  446 PLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTPTL*H*PLRLNTFRGEPASSEFDWHFTPNHSS--SADFSTSVSTQADVKSRPSAACK----------LTVSCSFHSPPGVLFTFPSRYYYTIGHSVVFSFT 1300
            PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPM               PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP               P +     HF  N  +  S+  S   +T   +    SA  +          L     FHSP GVLFT PSRYY+TIGH  VFS T
Sbjct:  262 PLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTPRC-------------PVNCCASTHFGENQLALGSSGISPLTTTHPLILQHQSARGQSPGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLT 571          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9G3L9_FAGSY (Uncharacterized protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A2N9G3L9_FAGSY)

HSP 1 Score: 223 bits (568), Expect = 9.750e-61
Identity = 143/301 (47.51%), Postives = 168/301 (55.81%), Query Frame = 2
Query:  242 SLFHRVSL*DSVQIVTPFVRVGTYPTRNFATLGPL*LRPPFTGASV---ISRR-PVFLVNSRLDLVIAT**VPLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-------LVLTYPPRTSLPEETLGFQGIGFSPMLH-------------PLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYW-------LAVHVVFRVCIDLVPNYQPAPKQCFTP 1036
            S+   +SL DS QIVTPFVRVGT P + F  L     R     A+V     RR P                 PLLPKL+GYFAEFLRES LAP GILY PTCVG  YRY  +    +F     +G  ++      TL      A+ IFST  +         LT+PP T+L EE LGF+GIGFSPM               PL+  L  K ERSPTD  +    SA+ L PFIFGA  LDH +LGALAGD GCFPLD+ AYPP S+W       L  ++VFRVC+DLVP  +PAPKQCFTP
Sbjct:  196 SISPSLSLRDSAQIVTPFVRVGTLPDKEFRYL-----RTVIVTAAVHRGFGRRLPCHQSPGPGHCDPLCEEAPLLPKLRGYFAEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAVAPGTRTL------ARGIFSTPSYPEKAGAPCALTHPPWTNLAEEPLGFRGIGFSPMFALLKPTFSLPLRPPPLSRVLPSKAERSPTDAFLHPTASADRLAPFIFGARALDHGHLGALAGDPGCFPLDDEAYPPSSHWPTLTPVILRSYLVFRVCLDLVPLSRPAPKQCFTP 485          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9HVI7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVI7_FAGSY)

HSP 1 Score: 202 bits (514), Expect = 2.900e-57
Identity = 131/258 (50.78%), Postives = 148/258 (57.36%), Query Frame = 1
Query:    1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQPETCVFGKQSLGPCYCNLIGTPSP---EVTGLFCRVP*RELSRALWYTLPTHLC-RFRVQVFFTYDSASFSWKHNINYFNNAHIIPYS*LSSKYFLYFSTPRPDLPPADEPSGGNLRFSGHRILTHV 753
            N PTLGTYY PR R ADIEVPNLPVD +S     P+  R        NLCTPPLPF R  P  NC PET   V   VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF  +        QS GP +C+ +   +P   ++ G F     RE   A    L    C  F  +  F    +SFSW++ + YF+                    P PD P  DEP GG LRFSGH ILT+V
Sbjct:  118 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPC----HQSPGPGHCDPLCEEAPLLPKLRGYFAEFL-RESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAV-----------------APGPDSPSVDEPCGGTLRFSGHWILTNV 347          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9IAE2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IAE2_FAGSY)

HSP 1 Score: 177 bits (449), Expect = 1.480e-47
Identity = 118/239 (49.37%), Postives = 134/239 (56.07%), Query Frame = 1
Query:    1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSH-------------------QP---------ETCVFGKQSLGPCYCNLIGTPSP---EVTGLFCRVP*RELSRALWYTLPTHLC-RFRVQVFFTYDSASFSWKHNINYFN 612
            N PTLGTYY PR R ADIEVPNLPVD +S     P+  R        NLCTPPLPF R  P  NC PET   V   VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF                     QP         + C FGKQS GP +C+ +   +P   ++ G F     RE   A    L    C  F  +  F    +SFSW++ + YF+
Sbjct:  118 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDLPALGRRQPPYMVLRLCGDLCWFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEFL-RESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFS 349          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9EWN1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EWN1_FAGSY)

HSP 1 Score: 164 bits (414), Expect = 1.070e-43
Identity = 91/131 (69.47%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQ 384
            N PTLGTYY PR R ADIEVPNLPVD +S     P+  R        NLCTPPLPF R  P  NC PET   V   VVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF  +
Sbjct:  118 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRR 242          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A2N9HQM6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HQM6_FAGSY)

HSP 1 Score: 164 bits (416), Expect = 2.060e-42
Identity = 115/258 (44.57%), Postives = 132/258 (51.16%), Query Frame = 1
Query:    1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIR---NLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQPETCVFGKQSLGPCYCNLIGTPSP---EVTGLFCRVP*RELSRALWYTLPTHLC-RFRVQVFFTYDSASFSWKHNINYFNNAHIIPYS*LSSKYFLYFSTPRPDLPPADEPSGGNLRFSGHRILTHV 753
            N PTLGTYY PR R ADIEVPNLPVD +S     P+  R        NLCTPPLPF R  P  NC PET   V   VVRIFTD SISPSLS RQCP+RYAFRAG                  + H       ETCVFGKQS GP +C+ +   +P   ++ G F     RE   A    L    C  F  +  F    +SFSW++ + YF+                    P PD P  DEP GG LRFSGH ILT+V
Sbjct:   92 NCPTLGTYYSPRWRRADIEVPNLPVDSSSL---LPLHSRANLRLARGNLCTPPLPFGRPTPHRNCLPET---VPWPVVRIFTDMSISPSLSPRQCPDRYAFRAG-----------------VSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEFL-RESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGYFSAV-----------------APGPDSPSVDEPCGGTLRFSGHWILTNV 308          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A5N5KVY8_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5KVY8_9ROSI)

HSP 1 Score: 157 bits (397), Expect = 2.130e-40
Identity = 115/279 (41.22%), Postives = 127/279 (45.52%), Query Frame = 1
Query:    1 NSPTLGTYYRPRMR*ADIEVPNLPVDVNSWGDHQPVIPRVTFIRNLCTPPLPFRRRPPQSNCPPETGLSVLVQVVRIFTDKSISPSLSLRQCPNRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFSHQPETCVFGKQSLGPCY--CNLIGTPSPEVTGLFCRVP*RELSR-----ALWYTLPTHLCRFRVQVFFTYDSASFSWKHNINYFNNAHIIPYS*LSSKYFLYFSTPRPDLPPADEPSGGNLRFSGHRILTHV-------------TPAYANAS 777
            N PTLGTYY PR R ADIEVPNLPVDV                                             QVVRIFTD SISPSLS RQCP+RYAFRAGRNLPDKEFRYLRTVIVTAAVHRGF  +            PC+   N +  P+     L  R P   + R       WY              F    +SFSW++ + YF+                    P PD P  DEP GG LRFSGH ILT+V             TPA A AS
Sbjct:  163 NCPTLGTYYSPRWRRADIEVPNLPVDV---------------------------------------------QVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL-----------PCHQVTNFLDLPA-----LGRRQPPYMVLRLCGDLCFWYP-------------FVEGRSSFSWEYGMGYFSVV-----------------APGPDSPSVDEPCGGTLRFSGHWILTNVCVTQADILASASSTPARAGAS 350          
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Match: A0A8J5FAK3_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FAK3_ZINOF)

HSP 1 Score: 158 bits (400), Expect = 1.080e-39
Identity = 113/276 (40.94%), Postives = 137/276 (49.64%), Query Frame = 2
Query:  350 LRPPFTGASV----ISRRPVFLV----------------------------NSRLDLVIAT**VPLLPKLQGYFAEFLRESYLAPFGILYQPTCVGLEYRYSLLMTVQAF-----LGSITSTTSIMHTLFRIHNSAQSIFSTSQH-LVLTYPPRTSLPEETLGFQGIGFSPMLHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAGLLDHNYLGALAGDLGCFPLDNGAYPP*SYWLAV---------HVVFRVCIDLVPNYQPAPKQCFTP 1036
            LRPPFTGASV    + R P  L                                 D +      PLLPKL+GYFAEFLRES LAP GILY PT VG  YRY  +    +F     +G   +      TL R  +S  S    ++    LT+PP T+L EE LGF+GIGFSPM       L+P        +L+     AN L        L    +LGALAGD GCFPLD+ AYPP S+W  +         ++VFRVC+DLVP  +PAPKQCFTP
Sbjct:   40 LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEE--APLLPKLRGYFAEFLRESCLAPLGILYLPTSVGFGYRYPFVEGRSSFSWEYGMGYFRAVAPRTRTLARGISSTPSYPEKARSPCALTHPPWTNLAEEPLGFRGIGFSPMF----ALLKPTFSLPLRPHLL---ARANLLAVSAPLPPLSLSGHLGALAGDPGCFPLDDEAYPPSSHWPTLIPLIFFGGSYLVFRVCLDLVPLSRPAPKQCFTP 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1577.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9I1D1_FAGSY4.820e-7847.70Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9FRF2_FAGSY9.830e-6345.59Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A2N9H1D9_FAGSY1.240e-6245.59Uncharacterized protein n=10 Tax=Magnoliopsida Tax... [more]
A0A2N9G3L9_FAGSY9.750e-6147.51Uncharacterized protein n=2 Tax=Magnoliopsida TaxI... [more]
A0A2N9HVI7_FAGSY2.900e-5750.78Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9IAE2_FAGSY1.480e-4749.37Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9EWN1_FAGSY1.070e-4369.47Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HQM6_FAGSY2.060e-4244.57Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A5N5KVY8_9ROSI2.130e-4041.22Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A8J5FAK3_ZINOF1.080e-3940.94Uncharacterized protein n=1 Tax=Zingiber officinal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1577contigP-littoralis_Contig1577:3140..5277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4155.Migut.D01396.1.p
Model size1357
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons8
Evalue0.000415
EggNOG OGs2D3FT@1|root,2SREA@2759|Eukaryota,380NY@33090|Viridiplantae,3GQ9H@35493|Streptophyta
Cds size381
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1577.3.1prot_P-littoralis_Contig1577.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1577 3730..4338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.1621506-UTR-P-littoralis_Contig1577:3139..33421680789752.1621506-UTR-P-littoralis_Contig1577:3139..3342Pylaiella littoralis U1_48UTRP-littoralis_Contig1577 3140..3342 -
1680789752.1773696-UTR-P-littoralis_Contig1577:3521..37291680789752.1773696-UTR-P-littoralis_Contig1577:3521..3729Pylaiella littoralis U1_48UTRP-littoralis_Contig1577 3522..3729 -
1680789752.2366884-UTR-P-littoralis_Contig1577:4338..45181680789752.2366884-UTR-P-littoralis_Contig1577:4338..4518Pylaiella littoralis U1_48UTRP-littoralis_Contig1577 4339..4518 -
1680789752.2469454-UTR-P-littoralis_Contig1577:4597..47841680789752.2469454-UTR-P-littoralis_Contig1577:4597..4784Pylaiella littoralis U1_48UTRP-littoralis_Contig1577 4598..4784 -
1680789752.2602823-UTR-P-littoralis_Contig1577:4946..50141680789752.2602823-UTR-P-littoralis_Contig1577:4946..5014Pylaiella littoralis U1_48UTRP-littoralis_Contig1577 4947..5014 -
1680789752.273989-UTR-P-littoralis_Contig1577:5147..52771680789752.273989-UTR-P-littoralis_Contig1577:5147..5277Pylaiella littoralis U1_48UTRP-littoralis_Contig1577 5148..5277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.191898-CDS-P-littoralis_Contig1577:3729..37991680789752.191898-CDS-P-littoralis_Contig1577:3729..3799Pylaiella littoralis U1_48CDSP-littoralis_Contig1577 3730..3799 -
1680789752.2025313-CDS-P-littoralis_Contig1577:3886..39381680789752.2025313-CDS-P-littoralis_Contig1577:3886..3938Pylaiella littoralis U1_48CDSP-littoralis_Contig1577 3887..3938 -
1680789752.2159245-CDS-P-littoralis_Contig1577:3955..41031680789752.2159245-CDS-P-littoralis_Contig1577:3955..4103Pylaiella littoralis U1_48CDSP-littoralis_Contig1577 3956..4103 -
1680789752.226099-CDS-P-littoralis_Contig1577:4227..43381680789752.226099-CDS-P-littoralis_Contig1577:4227..4338Pylaiella littoralis U1_48CDSP-littoralis_Contig1577 4228..4338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1577.3.1

>prot_P-littoralis_Contig1577.3.1 ID=prot_P-littoralis_Contig1577.3.1|Name=mRNA_P-littoralis_Contig1577.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MTVQAFLGSITSTTSIMHTLFRIHNSAQSIFSTSQHLVLTYPPRTSLPEE
TLGFQGIGFSPMLHPLTLTLQPKTERSPTDYLIIIITSANYLVPFIFGAG
LLDHNYLGALAGDLGCFPLDNGAYPP*
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mRNA from alignment at P-littoralis_Contig1577:3140..5277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1577.3.1 ID=mRNA_P-littoralis_Contig1577.3.1|Name=mRNA_P-littoralis_Contig1577.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2138bp|location=Sequence derived from alignment at P-littoralis_Contig1577:3140..5277- (Pylaiella littoralis U1_48)
AACAGCCCAACCCTTGGGACGTACTACCGCCCCAGGATGCGATGAGCCGA CATCGAGGTGCCAAACCTCCCCGTCGATGTGAACTCTTGGGGAGATCATC AGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGTGACGACTTTTCCA CTCAATATCGCCAGATCACTAAGACCGACTTTCGTCTCTGTTCGACTTGT AGGTCTCACAGTCAAGCTTCCTTTTGCCTTTGCACTCTACGATCGATTTC TGACCGATCTGAGGAAACCTTTGTACGCCTCCGTTACCTTTTAGGAGGCG ACCGCCCCAGTCAAACTGCCCGCCTGAAACTGTTCCCTAACCGGCTAACG ATATAGGGTTAGAATTCTAGTTTTATTAGAGTGGTATCTCACTGATGACT CCATTAATCCCGTAAGATTAATATCAAAGCCTCCCACCTATGCTGCGCAA ATAAAACCCGAAACCAATTTCAAGTTACAGTAAAGCTTCATAGGGTCTTT CTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTATTTCACCG AGTCTCTCTCTGAGACAGTGTCCAAATCGTTACGCCTTTCGTGCGGGTCG GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGG CCGCCGTTCACCGGGGCTTCAGTCATCAGCGTCGTTAATAACTAACCAAC TTCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACGTTGTCTT ACAACTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTTGT TATTGCAACCTAATAGGTACCCCTTCTCCCGAAGTTACAGGGTTATTTTG CCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCTTTGGTATACTCTACCAA CCCACCTGTGTCGGTTTAGAGTACAGGTATTCTTTACTTATGACAGTGCA AGCTTTTCTTGGAAGCATAACATCAACTACTTCAATAATGCACACATTAT TCCGTATTCATAACTCAGCTCAAAGTATTTTCTCTACTTCTCAACACCTC GTATACTTAAACCAATAACCAGTATTTGGCTAGTTTAGCTGTCTTCGTCC CTCGTTGTCAATAAAGAATAGTATAGGAATATTAACCCATTGTCCATCGA CTACGCTTTTCAGCCTCGCCTTAGGTCCTGACTTACCCCCCGCGGACGAG CCTTCCGGAGGAAACCTTAGGTTTTCAGGGCATCGGATTCTCACCCATGT TACACCCGCTTACGCTAACGCTTCAACCTAAAACAGAACGCTCCCCTACC GATTATCTAATTATTATTATTAGTTTTTTAATCTCACAGCTTCGGCAAAT TACTTAGTCCCGTTCATTTTCGGCGCAGGATTACTCGACCAGTGAGCTAT TACGCACTCTTTAAAGGATTGCTGCTTCTAAGCAAACCTTCTGGTTGTTT AAGTCTTCCCACCTCCTTTGCCACTTAGTAATTATTTAGGGGCCTTAGCT GGTGATCTGGGCTGTTTCCCTCTTGACAATGGAGCTTATCCCCCATAGTC TTACTGGTTAGCTGTACATGTAGTATTCAGAGTTTGCATCGATTTGGTAC CGAATTACCAGCCCGCACCGAAGCAGTGCTTTACCCCTACATTATAACAC TAACCGCTGCGCCTAAACACATTTCGGGGAGAACCAGCTAGCTCCGAATT CGATTGGCATTTCACCCCTAACCACAGCTCATCTGCTGATTTTTCAACAT CAGTCAGTTCGGACCTCCACTTAGTATTACCTAAGCTTCATCCTGGCCAT GGTTAGATCATCCGGGTTCGGGTCCGTAATTAGTGACACTGCCACGCCCT ATTAAGACTCGTTTTCACTATGGCTCCAGTATTTTTTACCTTAACCTTGC CACTAACTACAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGGCAGACG TTAAAAGTCGTCCTTCTGCTGCTTGTAAGCTTACGGTTTCATGTTCTTTT CACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTATTACAC TATCGGTCATTCAGTAGTATTTAGCTTTACGAGGTGGTCCTCGCAGATTC ACACGGGATTTCACGTGCCCCATGCTACTCGGGATGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1577:3140..5277-

>mRNA_P-littoralis_Contig1577.3.1 ID=mRNA_P-littoralis_Contig1577.3.1|Name=mRNA_P-littoralis_Contig1577.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig1577:3140..5277- (Pylaiella littoralis U1_48)
ATGACAGTGCAAGCTTTTCTTGGAAGCATAACATCAACTACTTCAATAAT
GCACACATTATTCCGTATTCATAACTCAGCTCAAAGTATTTTCTCTACTT
CTCAACACCTCGTCCTGACTTACCCCCCGCGGACGAGCCTTCCGGAGGAA
ACCTTAGGTTTTCAGGGCATCGGATTCTCACCCATGTTACACCCGCTTAC
GCTAACGCTTCAACCTAAAACAGAACGCTCCCCTACCGATTATCTAATTA
TTATTATTACTTCGGCAAATTACTTAGTCCCGTTCATTTTCGGCGCAGGA
TTACTCGACCATAATTATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTT
CCCTCTTGACAATGGAGCTTATCCCCCATAG
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