mRNA_P-littoralis_Contig1.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.87.1
Unique NamemRNA_P-littoralis_Contig1.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: D7G946_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G946_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 7.560e-43
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVR 327
            +F+A++ M+VATRFTHLGQLKGSAGGYM+KGDPIYSLTANK+GL VRFSNLESIED+H G D  LDWD A+GEWVHVEIITTFGQSM V 
Sbjct:  185 SFQAIEDMQVATRFTHLGQLKGSAGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVN 274          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 9.310e-42
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVRQISL 339
            +FK ++ MKVATR+THLGQLKGSAGGYMIKGDPIYSLTANK+GL VRFSNLE+IED+H G D  LDWD  +GEWVHVEIITTFG+SMVVR+  L
Sbjct:  126 SFKLIEDMKVATRYTHLGQLKGSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVVRRDGL 219          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.900e-41
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVR 327
            +FK ++ MKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANK+GL VRFSNLE+IED+H G D  LDWD  +GEWVHVEIITTFG+SMVV 
Sbjct:   52 SFKPIEDMKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVVN 141          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 3.440e-41
Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVR 327
            +F+A++ M+VATRFTHLGQLKGSAGGYMIKGDPIYSLTANK+GL VRFSNLESIED+H G D  LDWD A+GEWVHVEIITTFGQSM V 
Sbjct:  228 SFQAIEDMQVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVN 317          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: D7FI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI96_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.220e-36
Identity = 67/107 (62.62%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 HSQTIRLTGIAFSDRTLWRNFKAVDGMKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMV 321
            H +T R TGIAFS    WR  K   G   +     L +   + GGYM+KGDPIYSLTANK+GL VRFSNLESIED+H G D  LDWD A+GEWVHVEIITTFG+SMV
Sbjct:    2 HWKTTRYTGIAFSGLNPWR--KCFRGGVTSRPALELPKSTRAPGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSMV 106          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.650e-30
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSAG-----GYMIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVR 327
            +F+A +GM+V++++THLGQLKG+ G     G MIK DPIY LTANK GLMVRFSN E  ++FH G  +HL+W D++G+WVHV+I+TTFG+ MVVR
Sbjct:   99 SFRAEEGMRVSSKYTHLGQLKGTIGKGKVKGTMIKLDPIYCLTANKDGLMVRFSNREMPDNFHEGLSKHLNWKDSTGQWVHVKIVTTFGEFMVVR 193          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 8.370e-26
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1
Query:  139 MIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVR 327
            M+KGDPIYSLTANK+GL VRFSNLESIED+H G D  LDWD A+GEWVHVEIITTFGQSM V 
Sbjct:    1 MVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVN 63          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.610e-23
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVV 324
            +F+A DGMKV+   T +GQ+KG +GG+ +KG+P++S+TAN  G+ VRF+N ES  D   G D  L W+DA+GEWVHVEI TTFG+SM V
Sbjct:  129 SFRAKDGMKVSGSSTRIGQMKGVSGGFQLKGNPLFSVTANNNGINVRFNNEES--DKVEGMDDTLSWEDATGEWVHVEIRTTFGKSMEV 215          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: D8LDJ9_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ9_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.990e-21
Identity = 48/92 (52.17%), Postives = 68/92 (73.91%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSA-GGYMIKGDPIYSLTANKYGLMVRFSNLE-SIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVR 327
            +F+AV+GMK+  RFTH+GQ+KG+  GG  + GDPI S++AN  GL VRFSN++ +I D++     + +W DA+GEWVHV I T FG+SM V+
Sbjct:  131 SFRAVEGMKLGKRFTHIGQIKGAYNGGQTVDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWKDATGEWVHVTIDTVFGESMEVK 222          
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.120e-21
Identity = 47/92 (51.09%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   58 NFKAVDGMKVATRFTHLGQLKGSA-GGYMIKGDPIYSLTANKYGLMVRFSNLE-SIEDFHPGFDQHLDWDDASGEWVHVEIITTFGQSMVVR 327
            +F+AV+GMK+  RFTH+GQ+KG+  GG  + GDPI S++AN  GL VRFSN++ +I D++     + +W+DA+GEWVHV I T FG+ M V 
Sbjct:  168 SFRAVEGMKLGKRFTHIGQIKGAYNGGQTVDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWEDATGEWVHVTIDTVFGEFMEVE 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G946_ECTSI7.560e-4380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBB3_9PHAE9.310e-4277.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXY2_9PHAE2.900e-4180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ0_9PHAE3.440e-4181.11WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI96_ECTSI2.220e-3662.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAW5_9PHAE4.650e-3060.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH2_ECTSI8.370e-2680.95WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDH3_ECTSI2.610e-2356.18WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDJ9_ECTSI1.990e-2152.17Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5K5S3_9PHAE4.120e-2151.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:544233..545294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDH2
PFAMsFn3-like,Glyco_hydro_3,Glyco_hydro_3_C,Polysacc_lyase,WSC
Model size342
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.37e-26
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000750.1
EC3.2.1.37
Descriptionprotein xylosyltransferase activity
Cds size342
COG categoryU
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789312.4069197-CDS-P-littoralis_Contig1:544232..5442911680789312.4069197-CDS-P-littoralis_Contig1:544232..544291Pylaiella littoralis U1_48CDSP-littoralis_Contig1 544233..544291 +
1680789312.4192443-CDS-P-littoralis_Contig1:545011..5452941680789312.4192443-CDS-P-littoralis_Contig1:545011..545294Pylaiella littoralis U1_48CDSP-littoralis_Contig1 545012..545294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.87.1prot_P-littoralis_Contig1.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 544233..545294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.87.1

>prot_P-littoralis_Contig1.87.1 ID=prot_P-littoralis_Contig1.87.1|Name=mRNA_P-littoralis_Contig1.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
HSQTIRLTGIAFSDRTLWRNFKAVDGMKVATRFTHLGQLKGSAGGYMIKG
DPIYSLTANKYGLMVRFSNLESIEDFHPGFDQHLDWDDASGEWVHVEIIT
TFGQSMVVRQISL*
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mRNA from alignment at P-littoralis_Contig1:544233..545294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.87.1 ID=mRNA_P-littoralis_Contig1.87.1|Name=mRNA_P-littoralis_Contig1.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig1:544233..545294+ (Pylaiella littoralis U1_48)
CACTCACAGACTATCAGATTGACTGGGATTGCATTTTCGGACCGGACTCT CTGGAGGAAGTTTTCCAACGAGGAGGAGATTTCACGACCTGCCCGGAGGG GAGCAAATTGAAGCCATGCTCGAGGCAAGATGTACAGCCTTCTTCGCAAT TTTCTGGTACACGTGCAAACTAGCTTGTGCATTTTTTCGTTTGCATCTCG GCGAATAAATGCAAACCACACACACACCTGCAACGGTAGTTTTACATGTC GTCTACATATGTATACCGAAAATAATGATACCCGATACTGTATCGTCGAA CAGTCATGTTCCACGCTCCAACAACAGCTTTGATAATTGCCGAGTCTATG TTGTTAGATTATAGGGGCTAATCCTATAGACCATGGTAGTCAGCGCTGAC TACTATGGTCTATAGGATTAGACCCTATAACCTAACATATGTGTCGTGCA TGCGGGACGTCAAAAGCGGCACAATCTGCCGAGAATGTCGTCGTCAGATT CTCCAGTACCACCGCCAGATGCACTGCCAAACTAATTCAGGCGAACGGCA AACGTTTCTGTGCATTCGCTGCTGCTCTGGTGAAAAAATGTCGCTGTAGT AGTAGCGTTTAGGTCGCATCGCGAACGACGCATTTTTTGCCGACGCTGAT GTATTGTTTGTTTTGGGGATGTACCAGGTTCATCGTAAAGAAAGACGAAG AGCGTTCGGAGGTCAAGGTGCAGGAGGGCCCCGACGGGTTCCCCTTCCTC TATGGCGAAGAATACATCTTCAAGTACAGCTTCAAGGCAGTGGACGGCAT GAAGGTCGCCACGCGCTTCACACATCTCGGCCAGCTCAAAGGCTCCGCGG GAGGGTACATGATCAAGGGAGACCCAATCTATTCCCTCACCGCTAACAAG TACGGTCTGATGGTGCGCTTCAGCAACCTTGAGTCGATAGAAGACTTCCA CCCCGGATTTGACCAACATCTCGACTGGGATGATGCCTCTGGGGAGTGGG TACACGTGGAGATTATCACCACTTTCGGGCAGTCCATGGTGGTGAGACAA ATTTCACTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:544233..545294+

>mRNA_P-littoralis_Contig1.87.1 ID=mRNA_P-littoralis_Contig1.87.1|Name=mRNA_P-littoralis_Contig1.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1:544233..545294+ (Pylaiella littoralis U1_48)
CACTCACAGACTATCAGATTGACTGGGATTGCATTTTCGGACCGGACTCT
CTGGAGGAACTTCAAGGCAGTGGACGGCATGAAGGTCGCCACGCGCTTCA
CACATCTCGGCCAGCTCAAAGGCTCCGCGGGAGGGTACATGATCAAGGGA
GACCCAATCTATTCCCTCACCGCTAACAAGTACGGTCTGATGGTGCGCTT
CAGCAACCTTGAGTCGATAGAAGACTTCCACCCCGGATTTGACCAACATC
TCGACTGGGATGATGCCTCTGGGGAGTGGGTACACGTGGAGATTATCACC
ACTTTCGGGCAGTCCATGGTGGTGAGACAAATTTCACTTTGA
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