mRNA_P-littoralis_Contig1574.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1574.4.1
Unique NamemRNA_P-littoralis_Contig1574.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 6.740e-153
Identity = 204/263 (77.57%), Postives = 232/263 (88.21%), Query Frame = 1
Query:    4 QGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNAWE 792
            +GN F DIYHMSFIS+ TA ATFH F R+FAREMY EHI+LPTGDYQ KVM++Y+RLGF+GA GSTDVTH+ WG CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR+D AVT+IR DPIY+E+ + +Y+ADG   Q KGCYLLVDNGYHKW TL+ P+KY I++ D  FS RLES RKDVEC+FGIVKGRFRI KL+IPYHK+EDIDNVFFTCCILHNMLHSYDNK EM EEPNWAG+AGLHNAWE
Sbjct:  168 RGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWE 430          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 420 bits (1079), Expect = 1.350e-144
Identity = 192/261 (73.56%), Postives = 225/261 (86.21%), Query Frame = 1
Query:    4 QGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNA 786
            +GNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE+ Y LY  DG   +EKGCYLLVDNGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+DN+G+M EEPNWAGSAGLHNA
Sbjct:   93 RGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNA 353          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 420 bits (1079), Expect = 2.800e-143
Identity = 192/261 (73.56%), Postives = 225/261 (86.21%), Query Frame = 1
Query:    4 QGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNA 786
            +GNVF DIYHMSFIS  T  +TFH FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR+DKAVTRIRTDP+YTE+ Y LY  DG   +EKGCYLLVDNGYHKW TL+ P+K  I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCCILHNMLHS+DN+G+M EEPNWAGSAGLHNA
Sbjct:  184 RGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNA 444          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 2.840e-113
Identity = 161/263 (61.22%), Postives = 198/263 (75.29%), Query Frame = 1
Query:    1 GQGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHN 783
            G+GNVF  IY++S++S PT Q  FH FC HFA EMY EHI+LP+ +     +VM +YE+LGF GA+GSTDVTH+ W  CPYNQ RS+TGKEG PT+ YQVTV+H  R LAVT GFTG+TNDKTII  D+AV RIRTD  Y E+ + ++  DG T   KGCYL+VDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+K RFRI KLA+ Y K+E +D VFFTCCILHNMLH++D  G + E+ NW GSA L N
Sbjct:  136 GRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQN 398          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 5.860e-113
Identity = 159/262 (60.69%), Postives = 197/262 (75.19%), Query Frame = 1
Query:    1 GQGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPT---GDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 777
            G+GN F  IY +S++S  T Q  FH FC+HFAREMY EHIYLP+   G+    VM +Y+RLGF+GA+GS DVTH+ W  CPYN ARS+TGKEG PT+ YQVTV+H  RA+AVT GFT +TNDKT + +D  V +IRTD  YTE+T+++Y+ DG T   KGCYLLVDNGYHKW  LM PTKY + + D +FS RLES RKDVEC+FGI+KG FRI K+A+ YH++E IDNVFFTCCILHNMLH++D   ++ E   W  SAG 
Sbjct:  107 GRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGA 367          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 6.230e-111
Identity = 166/289 (57.44%), Postives = 201/289 (69.55%), Query Frame = 1
Query:    1 GQGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYT----------------------------ERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 777
            G+GN F  IY MS++S  T Q  FH FCRHFAREMY E I+LPT +      VM +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +I TD  YT                            E+T+++Y+ DG T   KGCYLLVDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTC ILHNMLH++D   ++ E  NW  SAG+
Sbjct:   94 GRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGV 382          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 8.070e-110
Identity = 148/188 (78.72%), Postives = 167/188 (88.83%), Query Frame = 1
Query:  229 CPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNAWE 792
            CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR+D AVT+IR DPIY+E+ + +Y+ADG   Q KGCYLLVDNGYHKW TL+ P+KY I++ D  FS RLES RKDVEC+FGIVKG FRI KL+IPYHK+EDIDNVFFTCCILHNMLHSYDNK EM EEPNWAG+AGLHNAWE
Sbjct:    2 CPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWE 189          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 8.780e-110
Identity = 159/264 (60.23%), Postives = 188/264 (71.21%), Query Frame = 1
Query:    1 GQGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGLHNAWE 792
            G+GN F D+  +S +S   AQ TFH FCRHFA EM+ EHIYLPTG Y  +VM  + +LG+TGA GSTDVTH+ W  CP+   RSFTGKEG+PTIAY VTVDH  R LAVT GFTGATNDKTIIR+D  V +IRT   YTER Y L  A+G  R  +GC+L+VDNGYH+W TL+AP+KY     DT FS  LES RKDV C        FRI KL +PYHK+E +DN+FFTCCILHNMLH++D      E  +W GSAG H+AWE
Sbjct:   45 GKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGC--------FRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWE 300          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 7.330e-102
Identity = 151/261 (57.85%), Postives = 185/261 (70.88%), Query Frame = 1
Query:    1 GQGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 777
            G+GN F  I+ MS++S  T Q  FH FCR FAREMY EHI+LP  +      VM +Y+RLG                 CPYNQARS+TGK+ +PTIAYQVTVDH  RA+AVT GFTG+TNDKTI+ +D AV +IRTD  YTE+T++LY+ DG T   KGCY L DNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y  +E IDNVFFTCCILHNMLH++D   ++ E  NW  SAG+
Sbjct:   29 GKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGV 272          
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 2.020e-100
Identity = 141/227 (62.11%), Postives = 176/227 (77.53%), Query Frame = 1
Query:  103 MYHEHIYLPTGDYQTK--VMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEEPNWAGSAGL 777
            MY EHI+LPT +      V+ +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTI YQVTVDH  RA+AVT GFTG+TNDKT + +D AV +IRTD  YTE+T+++Y+ DG T   KGCY+LVDNGYHKW  L+ P+KY + + D +FS RLES RKDVEC+FGI+KGR RI  LA+ +  +E IDNVFFTCCILHNMLH++D   ++ E  NW  SAG+
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGV 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1574.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE6.740e-15377.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.350e-14473.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.800e-14373.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE2.840e-11361.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE5.860e-11360.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE6.230e-11157.44DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTC6_9PHAE8.070e-11078.72DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE8.780e-11060.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE7.330e-10257.85DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI2.020e-10062.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1574contigP-littoralis_Contig1574:7717..9092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size792
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.31e-101
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size792
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789751.9010007-CDS-P-littoralis_Contig1574:7716..80041680789751.9010007-CDS-P-littoralis_Contig1574:7716..8004Pylaiella littoralis U1_48CDSP-littoralis_Contig1574 7717..8004 -
1680789751.915742-CDS-P-littoralis_Contig1574:8588..90921680789751.915742-CDS-P-littoralis_Contig1574:8588..9092Pylaiella littoralis U1_48CDSP-littoralis_Contig1574 8589..9092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1574.4.1prot_P-littoralis_Contig1574.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1574 7717..9092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1574.4.1

>prot_P-littoralis_Contig1574.4.1 ID=prot_P-littoralis_Contig1574.4.1|Name=mRNA_P-littoralis_Contig1574.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=264bp
GQGNVFRDIYHMSFISVPTAQATFHSFCRHFAREMYHEHIYLPTGDYQTK
VMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTV
DHTKRALAVTPGFTGATNDKTIIRFDKAVTRIRTDPIYTERTYNLYDADG
ATRQEKGCYLLVDNGYHKWNTLMAPTKYAIEKGDTVFSNRLESSRKDVEC
YFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCILHNMLHSYDNKGEMGEE
PNWAGSAGLHNAWE
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mRNA from alignment at P-littoralis_Contig1574:7717..9092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1574.4.1 ID=mRNA_P-littoralis_Contig1574.4.1|Name=mRNA_P-littoralis_Contig1574.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1376bp|location=Sequence derived from alignment at P-littoralis_Contig1574:7717..9092- (Pylaiella littoralis U1_48)
GGCCAGGGGAACGTCTTTCGAGACATCTACCACATGTCTTTCATTAGCGT GCCGACAGCTCAGGCGACCTTCCACAGCTTCTGCAGGCACTTCGCCAGAG AGATGTACCACGAACACATCTATCTACCGACAGGAGATTATCAGACGAAG GTCATGAGCGAGTACGAGCGCCTTGGCTTCACAGGCGCGATCGGGTCTAC GGATGTCACCCACCTCGCGTGGGGCTGTTGCCCCTACAACCAAGCCCGTT CTTTCACAGGAAAAGAAGGGTATCCTACCATCGCATATCAAGTGACCGTC GATCACACTAAACGCGCGTTGGCAGTGACACCGGGCTTCACGGGCGCGAC GAATGACAAGACGATCATCCGTTTCGACAAAGCTGTCACCCGGATCCGGA CCGACCCGATCTACACCGAGCGCACGTACAACCTCTACGACGCGGACGGG GCGACACGCCAGGAGAAGGGGTGCTACTTGCTGGTGGACAATGGGTATCA CAAGGTTGGTTGTTGCCGAAAGAGAAGGTTTGATTTTGTTGTGCCACCTT ATACGTTGGAAGAACAAGCTACCTTGGCCCTTTTGTGACTGAGCCACGAA AAAGATCCCTTTGCAAGTCCTATGTCTTCGATTCGCTTTTTCGCGAAAGG AAAGCTGGTACGCGACGCGTAGCTCCGAAGCATTCGTGAAGATGAACTTT TGATCTTTCACGCTCGTATGCGAGCCTGTGCCTGCATATTTCGGGCATCT TTCGGGCAGTGGTGGTATGCCGAGCTGTGTGTAGCCTCTGTCGTTTTCGA GTGGGGATAATCTTTGTGCAAGGCGGTGTGTTGGTGTGGATGTATGTATG GATAATCAGGGTCGGGTTCGCAGAGGAACGTGCCGCCCTAGGATTAAGGT TCCGGGCCAAAGTCCGTCGCTAAACCCCTGTCACCAACAGGTTAACTCGA TAGTTAATGTGCGTTCATCATCGCCAGCATAAACGGGCGGGCGCGTTCGT GGAACGTATCCAAGACCGTATTCCATCCGCCAACAGCCTCCAAGCCCCCC TTCCTCCCTCCCCCCCCCCACCGCCGTCGTCTTCGCAGTGGAACACTCTC ATGGCCCCAACAAAGTACGCAATAGAGAAGGGCGATACGGTGTTCTCCAA CAGACTGGAGAGCTCGCGCAAGGATGTGGAGTGCTATTTTGGCATCGTGA AAGGCCGCTTCCGCATCAACAAGCTAGCGATCCCGTACCACAAGAAGGAA GACATCGACAACGTTTTCTTCACCTGCTGCATCCTCCACAACATGCTGCA CAGCTACGACAACAAGGGCGAGATGGGTGAGGAACCCAACTGGGCAGGGA GCGCGGGCCTGCACAACGCATGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1574:7717..9092-

>mRNA_P-littoralis_Contig1574.4.1 ID=mRNA_P-littoralis_Contig1574.4.1|Name=mRNA_P-littoralis_Contig1574.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=792bp|location=Sequence derived from alignment at P-littoralis_Contig1574:7717..9092- (Pylaiella littoralis U1_48)
GGCCAGGGGAACGTCTTTCGAGACATCTACCACATGTCTTTCATTAGCGT
GCCGACAGCTCAGGCGACCTTCCACAGCTTCTGCAGGCACTTCGCCAGAG
AGATGTACCACGAACACATCTATCTACCGACAGGAGATTATCAGACGAAG
GTCATGAGCGAGTACGAGCGCCTTGGCTTCACAGGCGCGATCGGGTCTAC
GGATGTCACCCACCTCGCGTGGGGCTGTTGCCCCTACAACCAAGCCCGTT
CTTTCACAGGAAAAGAAGGGTATCCTACCATCGCATATCAAGTGACCGTC
GATCACACTAAACGCGCGTTGGCAGTGACACCGGGCTTCACGGGCGCGAC
GAATGACAAGACGATCATCCGTTTCGACAAAGCTGTCACCCGGATCCGGA
CCGACCCGATCTACACCGAGCGCACGTACAACCTCTACGACGCGGACGGG
GCGACACGCCAGGAGAAGGGGTGCTACTTGCTGGTGGACAATGGGTATCA
CAAGTGGAACACTCTCATGGCCCCAACAAAGTACGCAATAGAGAAGGGCG
ATACGGTGTTCTCCAACAGACTGGAGAGCTCGCGCAAGGATGTGGAGTGC
TATTTTGGCATCGTGAAAGGCCGCTTCCGCATCAACAAGCTAGCGATCCC
GTACCACAAGAAGGAAGACATCGACAACGTTTTCTTCACCTGCTGCATCC
TCCACAACATGCTGCACAGCTACGACAACAAGGGCGAGATGGGTGAGGAA
CCCAACTGGGCAGGGAGCGCGGGCCTGCACAACGCATGGGAG
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