mRNA_P-littoralis_Contig1560.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A382L8W3_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382L8W3_9ZZZZ) HSP 1 Score: 362 bits (928), Expect = 2.960e-125 Identity = 184/218 (84.40%), Postives = 198/218 (90.83%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEGE-ELNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKARAKAQGGD 654
M IGIVGIKRGMTRIFTEEG SVPVTVIEATPNRITQVKSV+SDGYSA+QVT G++KASRVNKP AGHFAKANVEAGRKLWEF E ELN+GD+LTVEAFE GQKVDV GQSKGKGFAGVVKRHNFK QD+THGNS+SHRAPGSIGQCQTPGRVFKGKKM+GHMGA +VTTQTLE+VRVD ENNLLLVKGAVPGA G D+IVTP+VKA A GG+
Sbjct: 1 MAIGIVGIKRGMTRIFTEEGTSVPVTVIEATPNRITQVKSVESDGYSAIQVTKGSIKASRVNKPNAGHFAKANVEAGRKLWEFGPGDEKELNVGDSLTVEAFEVGQKVDVRGQSKGKGFAGVVKRHNFKMQDATHGNSISHRAPGSIGQCQTPGRVFKGKKMAGHMGARKVTTQTLEVVRVDSENNLLLVKGAVPGANGGDVIVTPAVKA---ASGGE 215
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A7C7SIA5_9GAMM (50S ribosomal protein L3 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7SIA5_9GAMM) HSP 1 Score: 357 bits (916), Expect = 1.920e-123 Identity = 174/218 (79.82%), Postives = 199/218 (91.28%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEGEELNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKARAKAQGGDS 657
MTIGIVGIKRGMTR+FTE+G S+PVTVIEATPNRITQVKSVD+DGY+A+QVT G VKASRV KP AG FAKA+VEAGR LWEFRT+ EL++GD+LTVEAF GQKVDVCG+SKGKGFAGV+KR+NF+ QD+THGNSVSHRAPGSIGQCQTPGRVFKGKKM+GHMGAARVTTQTLE++++DQENNLLL+KGAVPGA G D+IVTP+VK A GG+S
Sbjct: 1 MTIGIVGIKRGMTRVFTEDGVSIPVTVIEATPNRITQVKSVDTDGYTAIQVTAGTVKASRVKKPAAGQFAKASVEAGRSLWEFRTDDAELSVGDSLTVEAFTEGQKVDVCGKSKGKGFAGVIKRYNFQMQDATHGNSVSHRAPGSIGQCQTPGRVFKGKKMAGHMGAARVTTQTLEVIKIDQENNLLLIKGAVPGAKGGDVIVTPAVKV---ASGGES 215
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A3D0ZY18_9GAMM (50S ribosomal protein L3 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0ZY18_9GAMM) HSP 1 Score: 352 bits (904), Expect = 1.340e-121 Identity = 174/210 (82.86%), Postives = 191/210 (90.95%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEGE-ELNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKA 630
M IGIVGIKRGMTR+FTEEG S+PVTVIEATPNRITQVK+ DGYSA+QVT G +K+SRVNKP AGHFAKANVEAGRKLWEFR GE ELN+GD+LTVE FEAG++VDV GQSKGKGFAGV+KRHNFK QD+THGNS+SHRAPGSIGQCQTPGRVFKGKKM+GHMGA +VT QTLEIVRVD ENNLLLVKGAVPGA G D+IVTP+VKA
Sbjct: 1 MAIGIVGIKRGMTRVFTEEGESLPVTVIEATPNRITQVKTAGIDGYSAIQVTKGGIKSSRVNKPRAGHFAKANVEAGRKLWEFRIGGETELNVGDSLTVEGFEAGERVDVSGQSKGKGFAGVIKRHNFKMQDATHGNSISHRAPGSIGQCQTPGRVFKGKKMAGHMGARQVTIQTLEIVRVDNENNLLLVKGAVPGAKGGDVIVTPAVKA 210
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: UPI001AEFBDBF (50S ribosomal protein L3 n=1 Tax=Motiliproteus sediminis TaxID=1468178 RepID=UPI001AEFBDBF) HSP 1 Score: 337 bits (863), Expect = 2.050e-115 Identity = 167/211 (79.15%), Postives = 189/211 (89.57%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEG-EELNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKAR 633
M IG+VG K GMTR+FTE+GASVPVTVIE PNRITQVKS+++DGYSAVQVT+GA K+SRVNKP+AGHFAKA VEAGR LWEFR G EE+ +GDALTVE FEAGQKVDV GQSKGKGF GV+KR NF+TQD+THGNS+SHRAPGSIGQCQTPGRV+KGKKMSGHMG RVT QTLE+VRVD E NLLL+KGAVPGATG+D++V P+VKAR
Sbjct: 1 MAIGLVGRKAGMTRVFTEDGASVPVTVIEVEPNRITQVKSLENDGYSAVQVTVGAKKSSRVNKPQAGHFAKAGVEAGRGLWEFRLAGDEEVQVGDALTVERFEAGQKVDVTGQSKGKGFQGVIKRWNFRTQDATHGNSLSHRAPGSIGQCQTPGRVWKGKKMSGHMGDERVTVQTLEVVRVDVERNLLLIKGAVPGATGSDVVVKPAVKAR 211
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A2E8KBI5_9GAMM (50S ribosomal protein L3 n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8KBI5_9GAMM) HSP 1 Score: 332 bits (852), Expect = 9.710e-114 Identity = 163/209 (77.99%), Postives = 188/209 (89.95%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEGEE-LNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVK 627
MTIGIVGIKRGMTRIFTEEG S+PVTVIEATPNR+TQVK+++SDGY+A+Q+T G VK S V KP AGHF+KANVEAG+ L E R EE +++GD+LTVEAFE GQKVDV GQSKGKGFAGVVKR+NFK QD+THGNS+SHRAPGSIGQCQTPGRV+KGKKM+GHMGAA+VT QTLEI++VDQEN+LLLVKGAVPGA G D+IV P+VK
Sbjct: 1 MTIGIVGIKRGMTRIFTEEGQSIPVTVIEATPNRVTQVKTLESDGYNAIQITHGTVKVSNVTKPVAGHFSKANVEAGQNLTELRCSAEEEISVGDSLTVEAFEEGQKVDVSGQSKGKGFAGVVKRYNFKMQDATHGNSISHRAPGSIGQCQTPGRVYKGKKMAGHMGAAKVTAQTLEIIKVDQENHLLLVKGAVPGAKGGDVIVKPAVK 209
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A2E4UW17_9GAMM (50S ribosomal protein L3 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4UW17_9GAMM) HSP 1 Score: 332 bits (850), Expect = 2.330e-113 Identity = 163/212 (76.89%), Postives = 184/212 (86.79%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTE-GEELNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKARA 636
MTIGIVGIKRGM+RIFT+EG S+PVTVIEATPNRITQ K+ D+DGY A+QVT G VK S+VNKP AGHF+K NV+AGR LWEFR E G +L IGDAL V AFE GQKVDV GQSKG+GFAGVV+RHNF TQD +HGNS+SHRAPGSIGQCQTPGRVFKGKKM+GHMGAA+VT QTLEI VD E NLLL+KGAVPGA G D++V P+VKA+A
Sbjct: 1 MTIGIVGIKRGMSRIFTDEGVSIPVTVIEATPNRITQRKTADTDGYEAIQVTAGEVKQSKVNKPLAGHFSKGNVDAGRHLWEFRVEAGSDLTIGDALDVSAFEVGQKVDVTGQSKGRGFAGVVRRHNFSTQDMSHGNSISHRAPGSIGQCQTPGRVFKGKKMAGHMGAAQVTVQTLEIAEVDTERNLLLIKGAVPGARGGDLVVRPAVKAKA 212
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A2E7XGP0_9GAMM (50S ribosomal protein L3 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XGP0_9GAMM) HSP 1 Score: 330 bits (846), Expect = 7.960e-113 Identity = 167/209 (79.90%), Postives = 182/209 (87.08%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFR-TEGEELNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVK 627
MTIGIVG+KRGMTRIFTE+GAS+PVTVIEA+PNRI Q K+ D DGY A+QVT G VKASRVNKP AGHF+KANVEAGR L+EFR T EL +GD LTVE FE GQK DV GQSKGKGFAGVVKR N + QD+THGNS+SHRAPG IGQCQTPGRVFKGKKM+GHMGA RVTTQTLE+VRVDQENNLLLVKGAVPGA G D+IV PSVK
Sbjct: 1 MTIGIVGVKRGMTRIFTEDGASMPVTVIEASPNRIAQRKTXDIDGYDALQVTCGEVKASRVNKPMAGHFSKANVEAGRSLYEFRCTADSELAVGDVLTVEGFEEGQKXDVTGQSKGKGFAGVVKRXNXQMQDATHGNSISHRAPGXIGQCQTPGRVFKGKKMAGHMGAVRVTTQTLEVVRVDQENNLLLVKGAVPGAAGXDVIVKPSVK 209
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A2E8VRN8_9GAMM (50S ribosomal protein L3 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8VRN8_9GAMM) HSP 1 Score: 329 bits (844), Expect = 1.550e-112 Identity = 160/211 (75.83%), Postives = 184/211 (87.20%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEG-EELNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKAR 633
MT+GIVGIKRGM+RIFTEEG S+PVTV+EATPNRITQ K+ DSDGY A+QVT G VK S+VNKP+AGHF+K NV AGR LWEFR + EL +GDAL V AFE GQKVDV GQSKG+GFAGVVKRHNF+TQD +HGNS+SHRAPGSIGQCQTPGRVFKGKKM+GHMGAA+VT QTLEI +VD E NLLL+KGAVPGA G D+++ P+VKA+
Sbjct: 1 MTVGIVGIKRGMSRIFTEEGESIPVTVVEATPNRITQRKTADSDGYEAIQVTAGDVKQSKVNKPQAGHFSKNNVAAGRDLWEFRIDSASELAVGDALEVSAFEVGQKVDVTGQSKGRGFAGVVKRHNFRTQDMSHGNSISHRAPGSIGQCQTPGRVFKGKKMAGHMGAAQVTVQTLEIAQVDTERNLLLIKGAVPGARGGDLVIRPAVKAK 211
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A3P3VHI2_9GAMM (50S ribosomal protein L3 n=2 Tax=Oceanospirillales TaxID=135619 RepID=A0A3P3VHI2_9GAMM) HSP 1 Score: 328 bits (842), Expect = 3.240e-112 Identity = 163/212 (76.89%), Postives = 184/212 (86.79%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEGEE-LNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKARA 636
MTIG+VG K GMTRIFTE+G S+PVTV+E PNRITQVKSV++DGY+AVQVT G+ +A+RV KP AGHFAKAN EAGR LWEFR EGEE +GD L V+ FEAGQKVDV GQSKGKGFAG +KR NF QD+THGNS+SHRAPGSIGQCQTPGRVFKGKKMSGHMGA RVT Q+LE+VRVD E NLLL+KGAVPGATGAD++V P+VKARA
Sbjct: 1 MTIGLVGKKCGMTRIFTEDGVSIPVTVVEVDPNRITQVKSVETDGYAAVQVTTGSRRATRVTKPMAGHFAKANTEAGRGLWEFRVEGEESFQVGDQLGVDRFEAGQKVDVTGQSKGKGFAGAIKRWNFSMQDATHGNSLSHRAPGSIGQCQTPGRVFKGKKMSGHMGAERVTVQSLEVVRVDAERNLLLIKGAVPGATGADVVVQPAVKARA 212
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Match: A0A081G119_9GAMM (50S ribosomal protein L3 n=7 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A081G119_9GAMM) HSP 1 Score: 327 bits (837), Expect = 1.870e-111 Identity = 161/212 (75.94%), Postives = 184/212 (86.79%), Query Frame = 1
Query: 4 MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQVTMGAVKASRVNKPEAGHFAKANVEAGRKLWEFRTEGEE-LNIGDALTVEAFEAGQKVDVCGQSKGKGFAGVVKRHNFKTQDSTHGNSVSHRAPGSIGQCQTPGRVFKGKKMSGHMGAARVTTQTLEIVRVDQENNLLLVKGAVPGATGADIIVTPSVKARA 636
M++G++G K GMTRIFT+EG SVPVTVIE PNR+T VK+V++DGY+AVQVT G KA+R++KPEAGHFAKA VEAGR LWEFR G+E +N+GDALTVE FEAGQKVDV GQSKGKGF G VKR NF+TQD THGNS+SHRAPGSIGQCQTPGRVFKGKKM+GHMGA R T QTLEIVR+D E NLL+VKGAVPGA G D+IV P+VKARA
Sbjct: 1 MSVGLIGRKAGMTRIFTDEGVSVPVTVIEVEPNRVTSVKTVETDGYAAVQVTTGGKKANRLSKPEAGHFAKAGVEAGRGLWEFRVNGDEGINVGDALTVERFEAGQKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERCTVQTLEIVRIDAERNLLIVKGAVPGAMGGDVIVKPAVKARA 212 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1560.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1560.3.1 >prot_P-littoralis_Contig1560.3.1 ID=prot_P-littoralis_Contig1560.3.1|Name=mRNA_P-littoralis_Contig1560.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp MTIGIVGIKRGMTRIFTEEGASVPVTVIEATPNRITQVKSVDSDGYSAVQback to top mRNA from alignment at P-littoralis_Contig1560:3378..4037+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1560.3.1 ID=mRNA_P-littoralis_Contig1560.3.1|Name=mRNA_P-littoralis_Contig1560.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig1560:3378..4037+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1560:3378..4037+ >mRNA_P-littoralis_Contig1560.3.1 ID=mRNA_P-littoralis_Contig1560.3.1|Name=mRNA_P-littoralis_Contig1560.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1560:3378..4037+ (Pylaiella littoralis U1_48)back to top |